ROUGE

Gene/Protein Characteristic Table for mKIAA0206

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK087506
Description :	lipoma HMGIC fusion partner-like 2.
Clone Name :	mpm06051 [Vector Info]
Source :	Mouse embryonic tail

Features of the cloned DNA sequence	Description

Length: 4314 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 3305 bp

Genome contig ID gi65535943f_90141892
PolyA signal sequence
(ATTAAA,-23)
+----*----+----*----+----*----+----
CTTGAGATCTGAATTAAATCCAATTTTGCAAACGC
Flanking genome sequence
(237585 - 237634)
----+----*----+----*----+----*----+----*----+----*
ATTCTTTCAAGTTTGTTGGCTTCAATACAGTGTACATAATTTGATCAAAA

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA0206 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA0206	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 299..1009
Length: 236 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
Q8BGA2	1.1e-94	100.0	Lipoma HMGIC fu...	Mus musculus
EDL00924	2.9e-94	99.5	lipoma HMGIC fu...	Mus musculus
EDM10071	1.9e-91	96.4	lipoma HMGIC fu...	Rattus norvegicus
XP_001108010	1.5e-79	84.6	similar to lipo...	Macaca mulatta
Q6ZUX7	5.3e-79	84.6	Lipoma HMGIC fu...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	ROUGE_ID
AK220449	2.7e-13	25.7	mKIAA4027

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 19 41 IVTCRSMLWTLLSIVVAFAELVA

110 132 AIFLAVGIFILCVVALVSVFTMC

144 166 VCGLLQGIAGLFLILGLILYPAG

197 219 TGGTVLTFICAVFSAQAEIATSS

Method	From	To	amino acid sequence
SOSUI	19	41	IVTCRSMLWTLLSIVVAFAELVA
110	132	AIFLAVGIFILCVVALVSVFTMC
144	166	VCGLLQGIAGLFLILGLILYPAG
197	219	TGGTVLTFICAVFSAQAEIATSS

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	3305 bp
Genome contig ID	gi65535943f_90141892
PolyA signal sequence (ATTAAA,-23)	+--------+--------+----*----+---- CTTGAGATCTGAATTAAATCCAATTTTGCAAACGC
Flanking genome sequence (237585 - 237634)	----+--------+--------+--------+--------+----* ATTCTTTCAAGTTTGTTGGCTTCAATACAGTGTACATAATTTGATCAAAA

Gene/Protein Characteristic Table for mKIAA0206

Features of the cloned DNA sequence

Features of the protein sequence