FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0206.ptfa, 236 aa
 vs ./tmplib.26680 library

1768781 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 2.7994+/-0.0037; mu= 21.4878+/- 0.250
 mean_var=58.8405+/-12.812, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1672

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4027  ( 287 res)   mfj32170                   ( 287)  253   69 2.7e-13


>>mKIAA4027  ( 287 res)   mfj32170                        (287 aa)
 initn: 167 init1: 102 opt: 253  Z-score: 331.2  bits: 68.9 E(): 2.7e-13
Smith-Waterman score: 291;  25.726% identity (29.245% ungapped) in 241 aa overlap (1-233:38-257)

                                             10        20          
mKIAA0                               PSGLQPRFPTVNINMCHVIVTCRSM--LWT
                                     :. . :   . ..   : . . :..  ::.
mKIAA4 PSRLGPAPAPRPVVSPGPAAPCQPLPPAPPPGTMLPSQEASKLYHEHYMRNSRAIGVLWA
        10        20        30        40        50        60       

       30        40        50        60        70          80      
mKIAA0 LLSIVVAFAELVAFMSADWLIGKAKTRSGSGDEQAGMNSEPHYLGIL--CIRTPAMQQVS
       ...:  :. ..:.:..  :.          ::  .  . .: :.:..  :. .     ..
mKIAA4 IFTICFAIINVVVFIQPYWV----------GDSVS--TPKPGYFGLFHYCVGSGL---AG
        70        80                  90         100       110     

         90        100       110        120       130       140    
mKIAA0 RDTLC-GTYAKSFGEIASGFWQATAIFLAVG-IFILCVVALVSVFTMCVQSIMRKSIFNV
       :.  : :... .:. : :. ..:.:.:. .. ..::  ..  ..: .:  .    .....
mKIAA4 RELTCRGSFT-DFSTIPSSAFKAAAFFVLLSMVLILGCITCFALFFFCNTA----TVYKI
            120        130       140       150       160           

          150       160       170        180       190       200   
mKIAA0 CGLLQGIAGLFLILGLILYPAGWGCQKAID-CGRYASPYKPGDCSLGWAFYTATGGTVLT
       :. .: .:.: :.:: ...: ::  .   : ::  .. :. ::::. ::.  :  : .:.
mKIAA4 CAWMQLLAALCLVLGCMIFPDGWDAETIRDMCGAKTGKYSLGDCSVRWAYILAIIG-ILN
       170       180       190       200       210       220       

           210       220        230                                
mKIAA0 FICAVFSAQAEIATSSDKVQEEI-EEGKNLVCLL                          
        .   : : .    ..: .:::. .:.:..:                             
mKIAA4 ALILSFLAFVLGNRQTDLLQEELKQENKDFVGTTVSSVLRPGGDVSGWGVLPCPVAHTQG
        230       240       250       260       270       280      

mKIAA4 P
        




236 residues in 1 query   sequences
1768781 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:14:37 2006 done: Mon Mar 27 10:14:37 2006
 Scan time:  0.470 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]