ROUGE |
Gene/Protein Characteristic Table for mKIAA0199 |
Link to : HUGE | SWISS-PROT/TrEMBL | |
Features : DNA sequence | Protein sequence | |
Accession No. : | AK172912 |
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SREBP cleavage activating protein. Sreb cleavage-activating protein. |
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mfj09054 [Vector Info] | |
Source : | Mouse fetal brain |
Features of the cloned DNA sequence |
Description | |
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Length: 4982 bp
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cloned DNA seq. | |
Warning for N-terminal truncation: | NO |
Warning for coding interruption: | YES |
Length of 3'UTR 144 bp Genome contig ID gi65519420f_110273398 PolyA signal sequence
(AATAAA,-23) +----*----+----*----+----*----+----
CCTGACTGTAATAATAAACTTTTTTAAAAAACCACFlanking genome sequence
(153191 - 153240) ----+----*----+----*----+----*----+----*----+----*
ATTTACCAGGGGCTGAAGTTCTTGTCATTCCACACTCCTCCTAGACCCTT
KIAA Alignment based on: KIAA0199 DNA sequence, AA sequence, Physical map
Features of the protein sequence |
Description | |
Coding region: 133..876, 1381..2580, 2949..4838
Length: 1277 aa
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The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
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The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Search method | interpro_ID | From | To | Entry | Definition |
---|---|---|---|---|---|
FPrintScan | IPR001680 | 1090 | 1104 | PR00320 | WD-40 repeat |
IPR001680 | 1131 | 1145 | PR00320 | WD-40 repeat | |
IPR001680 | 1171 | 1185 | PR00320 | WD-40 repeat | |
HMMPfam | IPR001680 | 768 | 803 | PF00400 | WD-40 repeat |
IPR001680 | 1068 | 1103 | PF00400 | WD-40 repeat | |
IPR001680 | 1108 | 1144 | PF00400 | WD-40 repeat | |
IPR001680 | 1149 | 1184 | PF00400 | WD-40 repeat | |
HMMSmart | IPR001680 | 766 | 803 | SM00320 | WD-40 repeat |
IPR001680 | 954 | 991 | SM00320 | WD-40 repeat | |
IPR001680 | 1063 | 1103 | SM00320 | WD-40 repeat | |
IPR001680 | 1106 | 1144 | SM00320 | WD-40 repeat | |
IPR001680 | 1148 | 1184 | SM00320 | WD-40 repeat | |
IPR001680 | 1187 | 1224 | SM00320 | WD-40 repeat | |
ProfileScan | IPR000731 | 285 | 443 | PS50156 | Sterol-sensing 5TM box |
IPR001680 | 1073 | 1233 | PS50294 | WD-40 repeat | |
IPR001680 | 1113 | 1153 | PS50082 | WD-40 repeat | |
ScanRegExp | IPR001680 | 1131 | 1145 | PS00678 | WD-40 repeat |
Method | From | To | amino acid sequence |
---|---|---|---|
SOSUI | 23 | 45 | LCASYPIPIILFTGLCILACCYP |
281 | 303 | IGIAELIPLVTTYIILFAYIYFS | |
316 | 338 | LALAAVVTVLSSLLMSVGLCTLF | |
350 | 372 | FPYLVVVIGLENVLVLTKSVVST | |
398 | 420 | ATELGIILIGYFTLVPAIQEFCL | |
424 | 445 | VGLVSDFFLQMLFFTTVLSIDI | |
710 | 732 | YKVAALGLAAGIVLVLLLLCLYR | |
773 | 795 | LRGHLMDIECLASDGMLLVSCCL |
How to obtain mKIAA clone(s) How to obtain anti mKIAA antibodies Back to the ROUGE Protein Database homepage ![]() | |