FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0199.ptfa, 1277 aa
 vs ./tmplib.26680 library

1767740 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 7.6468+/-0.00672; mu= 6.7294+/- 0.449
 mean_var=212.4197+/-49.944, 0's: 0 Z-trim: 2  B-trim: 43 in 1/35
 Lambda= 0.0880

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4167  ( 342 res)   mpj04828                   ( 342)  251   45 2.9e-05


>>mKIAA4167  ( 342 res)   mpj04828                        (342 aa)
 initn: 181 init1: 102 opt: 251  Z-score: 187.0  bits: 44.9 E(): 2.9e-05
Smith-Waterman score: 251;  27.000% identity (28.125% ungapped) in 200 aa overlap (1082-1275:102-299)

            1060      1070      1080      1090      1100      1110 
mKIAA0 SPSSSVYSSSNTVTCHRTHTVPCAHQKPITALRAAAGRLVTGSQDHTLRVFRLDDSCCLF
                                     :  . ..:::..:.:.::.:. . .. :: 
mKIAA4 AADALIIIWGAYDGNCKKTLYGHSLEISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLK
              80        90       100       110       120       130 

            1120       1130      1140      1150      1160          
mKIAA0 TLKGHSGAITAV-YIDQTMVLASGGQDGAICLWDVLTGSRVSQTFAHRGDVTSL--TCTA
       ::::::  .    .   . ...::. : .. .:.: ::. ..   ::   ....  .:..
mKIAA4 TLKGHSDFVFCCDFNPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVNFNCNG
             140       150       160       170       180       190 

     1170      1180      1190      1200      1210         1220     
mKIAA0 SCVISSGLDDFISIWDRSTGIKLYSIQQDLGCGASLGVISDN---LLVTGGQGCVSFWDL
       : ..:.. : .  ::: ..:  : .. .. .  .:.  .: :   .:..  .. ...:: 
mKIAA4 SLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDY
             200       210       220       230       240       250 

        1230      1240      1250      1260      1270               
mKIAA0 NYGDLLQTVYLGKNSEAQPARQILVLDNAAIVCNFGSELSLVYVPSVLEKLD        
       . :  :.: : :...:       . . .   : . ::: ..::. ..  :          
mKIAA4 SRGRCLKT-YTGHKNEKYCLFASFSVTGRKWVVS-GSEDNMVYIWNLQTKEIVQRLQGHT
              260       270       280        290       300         

mKIAA4 DVVISAACHPTKNIIASAALENDKTIKVWSSDC
     310       320       330       340  




1277 residues in 1 query   sequences
1767740 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:14:24 2006 done: Mon Mar 27 10:14:25 2006
 Scan time:  1.190 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]