ROUGE

Gene/Protein Characteristic Table for mKIAA0095

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK129055
Description :	Nuclear pore complex protein Nup93.
Clone Name :	mpf00372 [Vector Info]
Source :	Mouse embryonic tail

Features of the cloned DNA sequence	Description

Length: 5986 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
YES

Integrity of 3' end

Length of 3'UTR 4547 bp

Genome contig ID gi65515060f_93411834
PolyA signal sequence
(AATAAA,-29)
+----*----+----*----+----*----+----
AATACCAATAAATTTCTTTGATTTGTATTTCTTTT
Flanking genome sequence
(187198 - 187247)
----+----*----+----*----+----*----+----*----+----*
AAACATTCTTTTTCCTTTTTTTTTTCCTTTAAAATTTTAGGTTGTTTTCT

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA0095 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA0095	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 3..1421, 1828..2802
Length: 798 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
EDL11120	95.5	nucleoporin 93,...	Mus musculus
Q8BJ71	95.7	Nuclear pore co...	Mus musculus
EDL11121	95.7	nucleoporin 93,...	Mus musculus
AAH23140	95.6	Nucleoporin 93 ...	Mus musculus
Q66HC5	95.2	Nuclear pore co...	Rattus norvegicus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR007231 246 516 PF04097 Nucleoporin interacting component

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR007231	246	516	PF04097	Nucleoporin interacting component

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 470 492 YFFYFQVLFLTAQFEAAIAFLFR

497 519 RCHAVHVALVLFELKLLLKSSGQ

Method	From	To	amino acid sequence
SOSUI	470	492	YFFYFQVLFLTAQFEAAIAFLFR
497	519	RCHAVHVALVLFELKLLLKSSGQ

How to obtain mKIAA clone(s) How to obtain anti mKIAA antibodies Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	YES

Length of 3'UTR	4547 bp
Genome contig ID	gi65515060f_93411834
PolyA signal sequence (AATAAA,-29)	+--------+--------+----*----+---- AATACCAATAAATTTCTTTGATTTGTATTTCTTTT
Flanking genome sequence (187198 - 187247)	----+--------+--------+--------+--------+----* AAACATTCTTTTTCCTTTTTTTTTTCCTTTAAAATTTTAGGTTGTTTTCT

Gene/Protein Characteristic Table for mKIAA0095

Features of the cloned DNA sequence

Features of the protein sequence