# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mpf00372.fasta.nr -Q ../query/mKIAA0095.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0095, 798 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7921061 sequences Expectation_n fit: rho(ln(x))= 5.0728+/-0.000182; mu= 13.5577+/- 0.010 mean_var=72.1174+/-14.073, 0's: 37 Z-trim: 40 B-trim: 0 in 0/68 Lambda= 0.151027 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|148679173|gb|EDL11120.1| nucleoporin 93, isofor ( 852) 4851 1066.8 0 gi|46577036|sp|Q8BJ71.1|NUP93_MOUSE RecName: Full= ( 819) 4820 1060.0 0 gi|148679174|gb|EDL11121.1| nucleoporin 93, isofor ( 822) 4820 1060.0 0 gi|18606331|gb|AAH23140.1| Nucleoporin 93 [Mus mus ( 819) 4815 1058.9 0 gi|81884199|sp|Q66HC5.1|NUP93_RAT RecName: Full=Nu ( 819) 4801 1055.9 0 gi|149032456|gb|EDL87347.1| rCG39108, isoform CRA_ ( 822) 4801 1055.9 0 gi|114662650|ref|XP_510982.2| PREDICTED: nucleopor ( 921) 4756 1046.1 0 gi|218546716|sp|A5PJZ5.1|NUP93_BOVIN RecName: Full ( 819) 4747 1044.1 0 gi|116242684|sp|Q8N1F7.2|NUP93_HUMAN RecName: Full ( 819) 4736 1041.7 0 gi|21706468|gb|AAH34346.1| Nucleoporin 93kDa [Homo ( 819) 4730 1040.4 0 gi|218546785|sp|Q5R822.2|NUP93_PONAB RecName: Full ( 819) 4730 1040.4 0 gi|158257956|dbj|BAF84951.1| unnamed protein produ ( 819) 4720 1038.2 0 gi|73949816|ref|XP_535293.2| PREDICTED: similar to ( 819) 4717 1037.5 0 gi|55730735|emb|CAH92088.1| hypothetical protein [ ( 819) 4715 1037.1 0 gi|55730107|emb|CAH91778.1| hypothetical protein [ ( 880) 4711 1036.3 0 gi|149699151|ref|XP_001493370.1| PREDICTED: simila ( 819) 4703 1034.5 0 gi|126296177|ref|XP_001365246.1| PREDICTED: simila ( 819) 4648 1022.5 0 gi|149639909|ref|XP_001508135.1| PREDICTED: simila ( 819) 4624 1017.3 0 gi|118096238|ref|XP_001232547.1| PREDICTED: nucleo ( 819) 4444 978.1 0 gi|224064194|ref|XP_002189575.1| PREDICTED: nucleo ( 819) 4442 977.6 0 gi|74141793|dbj|BAE40970.1| unnamed protein produc ( 758) 4432 975.4 0 gi|46576971|sp|Q7ZX96.1|NUP93_XENLA RecName: Full= ( 820) 4179 920.3 0 gi|82185816|sp|Q6NX12.1|NUP93_XENTR RecName: Full= ( 820) 4176 919.7 0 gi|94732200|emb|CAK03943.1| dead eye [Danio rerio] ( 820) 4152 914.4 0 gi|46576970|sp|Q7ZU29.1|NUP93_DANRE RecName: Full= ( 820) 4146 913.1 0 gi|1490628|gb|AAB49669.1| An4a gi|148230897|re ( 820) 4132 910.1 0 gi|1679792|gb|AAB61137.1| Allele: hi4 [Danio rerio ( 820) 4121 907.7 0 gi|73949822|ref|XP_863067.1| PREDICTED: similar to ( 730) 4107 904.6 0 gi|76445923|gb|ABA42832.1| dead eye [Oncorhynchus ( 819) 4083 899.4 0 gi|76445902|gb|ABA42813.1| dead eye [Salmo salar] ( 820) 4068 896.1 0 gi|54288767|gb|AAV31759.1| dead eye protein [Monop ( 820) 4065 895.5 0 gi|76445913|gb|ABA42823.1| dead eye [Salmo salar] ( 820) 4065 895.5 0 gi|26337305|dbj|BAC32337.1| unnamed protein produc ( 699) 4057 893.7 0 gi|67968025|dbj|BAE00494.1| unnamed protein produc ( 696) 3982 877.3 0 gi|193786487|dbj|BAG51770.1| unnamed protein produ ( 696) 3977 876.3 0 gi|73949820|ref|XP_863041.1| PREDICTED: similar to ( 696) 3958 872.1 0 gi|47221890|emb|CAF98902.1| unnamed protein produc ( 905) 3159 698.1 4e-198 gi|210121668|gb|EEA69379.1| hypothetical protein B ( 829) 2947 651.9 3e-184 gi|210130035|gb|EEA77707.1| hypothetical protein B ( 815) 2854 631.6 3.7e-178 gi|60099135|emb|CAH65398.1| hypothetical protein [ ( 498) 2723 602.9 1e-169 gi|156220687|gb|EDO41551.1| predicted protein [Nem ( 817) 2564 568.4 3.9e-159 gi|221131750|ref|XP_002164359.1| PREDICTED: simila ( 814) 2239 497.6 8.1e-138 gi|215508997|gb|EEC18450.1| nuclear pore complex p ( 802) 2206 490.4 1.2e-135 gi|190589760|gb|EDV29782.1| hypothetical protein T ( 828) 2014 448.6 4.7e-123 gi|108871995|gb|EAT36220.1| nuclear pore complex p ( 811) 1944 433.3 1.8e-118 gi|167862467|gb|EDS25850.1| nuclear pore complex p ( 815) 1925 429.2 3.2e-117 gi|212517883|gb|EEB19712.1| Nuclear pore complex p ( 821) 1922 428.6 5.1e-117 gi|157018324|gb|EAA07366.4| AGAP003459-PA [Anophel ( 829) 1902 424.2 1e-115 gi|156537474|ref|XP_001607183.1| PREDICTED: simila ( 809) 1845 411.8 5.6e-112 gi|198434694|ref|XP_002131359.1| PREDICTED: simila ( 824) 1819 406.1 2.9e-110 >>gi|148679173|gb|EDL11120.1| nucleoporin 93, isoform CR (852 aa) initn: 4827 init1: 2767 opt: 4851 Z-score: 5706.0 bits: 1066.8 E(): 0 Smith-Waterman score: 4851; 95.477% identity (96.734% similar) in 796 aa overlap (8-798:26-821) 10 20 30 40 mKIAA0 RSRQRAATEAASASLMDTEGFGELLQQAEQLAAETEGISELP :. :::::::::::::::::::::::::::::::: gi|148 EEAGSGRRRRQDFKRILKGHSSIHRTQKASASLMDTEGFGELLQQAEQLAAETEGISELP 10 20 30 40 50 60 50 60 70 80 90 100 mKIAA0 HVERNLQEIQQAGERLRSRTLTRTSQETADVKASVLLGSRGLDISHISQRLESLSAATTF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 HVERNLQEIQQAGERLRSRTLTRTSQETADVKASVLLGSRGLDISHISQRLESLSAATTF 70 80 90 100 110 120 110 120 130 140 150 160 mKIAA0 EPLEPVKDTDIQGFLKNEKDNALLSAIEESRKRTFGMAEEYHRESMLVEWEQVKQRILHT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 EPLEPVKDTDIQGFLKNEKDNALLSAIEESRKRTFGMAEEYHRESMLVEWEQVKQRILHT 130 140 150 160 170 180 170 180 190 200 210 220 mKIAA0 LLASGEDALDFTQESEPSYIGDVNPPGRSSLDSIEMAYARQIYIYNEKIVSGHLQPNLVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LLASGEDALDFTQESEPSYIGDVNPPGRSSLDSIEMAYARQIYIYNEKIVSGHLQPNLVD 190 200 210 220 230 240 230 240 250 260 270 280 mKIAA0 LCASVAELDDKSISDMWAMVKQMTDVVLTPATDALKSRSSVEVRMDFVKQALGYLEQSYK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LCASVAELDDKSISDMWAMVKQMTDVVLTPATDALKSRSSVEVRMDFVKQALGYLEQSYK 250 260 270 280 290 300 290 300 310 320 330 340 mKIAA0 NYTLVTVFGNLHQAQLGGVPGTYQLVRSFLNIKLPAPSPGLQDGEVEGHPVWALIYYCMR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 NYTLVTVFGNLHQAQLGGVPGTYQLVRSFLNIKLPAPSPGLQDGEVEGHPVWALIYYCMR 310 320 330 340 350 360 350 360 370 380 390 400 mKIAA0 CGDLLAASQVVSRAQHQLGEFKTWFQEYMNSKDRRLSPATENKLRLHYRRALRNNTDPYK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 CGDLLAASQVVSRAQHQLGEFKTWFQEYMNSKDRRLSPATENKLRLHYRRALRNNTDPYK 370 380 390 400 410 420 410 420 430 440 450 mKIAA0 RAVYCIIGRCDITDNQSEVADKTEDYLWLKVGTVSF---GCSSPPCS-TLVMHEVCVVLR ::::::::::::::::::::::::::::::.. : : : ::: :: . . .. gi|148 RAVYCIIGRCDITDNQSEVADKTEDYLWLKLNQVCFDDDGTSSPQDRLTLSQFQKQLLED 430 440 450 460 470 480 460 470 480 490 500 510 mKIAA0 TGTVDFVSNPLYFFYFQVLFLTAQFEAAIAFLFRMERLRCHAVHVALVLFELKLLLKSSG : :. : :.:::::::::::::::::::::::::::::::::::::::::::::: gi|148 YGESHFTVNQQPFLYFQVLFLTAQFEAAIAFLFRMERLRCHAVHVALVLFELKLLLKSSG 490 500 510 520 530 540 520 530 540 550 560 570 mKIAA0 QSAQLLSHEPGDPPCMRRLNFVRLLMLYTRKFESTDPREALQYFYFLRDEKDSQGENMFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 QSAQLLSHEPGDPPCMRRLNFVRLLMLYTRKFESTDPREALQYFYFLRDEKDSQGENMFL 550 560 570 580 590 600 580 590 600 610 620 630 mKIAA0 RCVSELVIESREFDMILGKLENDGSRKPGVIDKFTSDTKPIINKVASVAENKGLFEEAAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 RCVSELVIESREFDMILGKLENDGSRKPGVIDKFTSDTKPIINKVASVAENKGLFEEAAK 610 620 630 640 650 660 640 650 660 670 680 690 mKIAA0 LYDLAKNADKVLELMNKLLSPVVPQISAPQSNKERLKNMALSIAERYRAQGISANKFVDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LYDLAKNADKVLELMNKLLSPVVPQISAPQSNKERLKNMALSIAERYRAQGISANKFVDS 670 680 690 700 710 720 700 710 720 730 740 750 mKIAA0 TFYLLLDLITFFDEYHSGHIDRAFDIIDRLKLVPLNQESVEERVAAFRNFSDEIRHNLSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 TFYLLLDLITFFDEYHSGHIDRAFDIIDRLKLVPLNQESVEERVAAFRNFSDEIRHNLSE 730 740 750 760 770 780 760 770 780 790 mKIAA0 VLLATMNILFTQFKRLKGTSPSSATRPQRVIEDRDS-VRSQ :::::::::::::::::::::::::::::::::::: .::: gi|148 VLLATMNILFTQFKRLKGTSPSSATRPQRVIEDRDSQLRSQARALITFAGMIPYRTSGDT 790 800 810 820 830 840 gi|148 NARLVQMEVLMN 850 >>gi|46577036|sp|Q8BJ71.1|NUP93_MOUSE RecName: Full=Nucl (819 aa) initn: 4796 init1: 2736 opt: 4820 Z-score: 5669.8 bits: 1060.0 E(): 0 Smith-Waterman score: 4820; 95.685% identity (96.827% similar) in 788 aa overlap (16-798:1-788) 10 20 30 40 50 60 mKIAA0 RSRQRAATEAASASLMDTEGFGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRS ::::::::::::::::::::::::::::::::::::::::::::: gi|465 MDTEGFGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRS 10 20 30 40 70 80 90 100 110 120 mKIAA0 RTLTRTSQETADVKASVLLGSRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|465 RTLTRTSQETADVKASVLLGSRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNE 50 60 70 80 90 100 130 140 150 160 170 180 mKIAA0 KDNALLSAIEESRKRTFGMAEEYHRESMLVEWEQVKQRILHTLLASGEDALDFTQESEPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|465 KDNALLSAIEESRKRTFGMAEEYHRESMLVEWEQVKQRILHTLLASGEDALDFTQESEPS 110 120 130 140 150 160 190 200 210 220 230 240 mKIAA0 YIGDVNPPGRSSLDSIEMAYARQIYIYNEKIVSGHLQPNLVDLCASVAELDDKSISDMWA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|465 YIGDVNPPGRSSLDSIEMAYARQIYIYNEKIVSGHLQPNLVDLCASVAELDDKSISDMWA 170 180 190 200 210 220 250 260 270 280 290 300 mKIAA0 MVKQMTDVVLTPATDALKSRSSVEVRMDFVKQALGYLEQSYKNYTLVTVFGNLHQAQLGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|465 MVKQMTDVVLTPATDALKSRSSVEVRMDFVKQALGYLEQSYKNYTLVTVFGNLHQAQLGG 230 240 250 260 270 280 310 320 330 340 350 360 mKIAA0 VPGTYQLVRSFLNIKLPAPSPGLQDGEVEGHPVWALIYYCMRCGDLLAASQVVSRAQHQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|465 VPGTYQLVRSFLNIKLPAPSPGLQDGEVEGHPVWALIYYCMRCGDLLAASQVVSRAQHQL 290 300 310 320 330 340 370 380 390 400 410 420 mKIAA0 GEFKTWFQEYMNSKDRRLSPATENKLRLHYRRALRNNTDPYKRAVYCIIGRCDITDNQSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|465 GEFKTWFQEYMNSKDRRLSPATENKLRLHYRRALRNNTDPYKRAVYCIIGRCDITDNQSE 350 360 370 380 390 400 430 440 450 460 470 mKIAA0 VADKTEDYLWLKVGTVSF---GCSSPPCS-TLVMHEVCVVLRTGTVDFVSNPLYFFYFQV ::::::::::::.. : : : ::: :: . . .. : :. : :.:::: gi|465 VADKTEDYLWLKLNQVCFDDDGTSSPQDRLTLSQFQKQLLEDYGESHFTVNQQPFLYFQV 410 420 430 440 450 460 480 490 500 510 520 530 mKIAA0 LFLTAQFEAAIAFLFRMERLRCHAVHVALVLFELKLLLKSSGQSAQLLSHEPGDPPCMRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|465 LFLTAQFEAAIAFLFRMERLRCHAVHVALVLFELKLLLKSSGQSAQLLSHEPGDPPCMRR 470 480 490 500 510 520 540 550 560 570 580 590 mKIAA0 LNFVRLLMLYTRKFESTDPREALQYFYFLRDEKDSQGENMFLRCVSELVIESREFDMILG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|465 LNFVRLLMLYTRKFESTDPREALQYFYFLRDEKDSQGENMFLRCVSELVIESREFDMILG 530 540 550 560 570 580 600 610 620 630 640 650 mKIAA0 KLENDGSRKPGVIDKFTSDTKPIINKVASVAENKGLFEEAAKLYDLAKNADKVLELMNKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|465 KLENDGSRKPGVIDKFTSDTKPIINKVASVAENKGLFEEAAKLYDLAKNADKVLELMNKL 590 600 610 620 630 640 660 670 680 690 700 710 mKIAA0 LSPVVPQISAPQSNKERLKNMALSIAERYRAQGISANKFVDSTFYLLLDLITFFDEYHSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|465 LSPVVPQISAPQSNKERLKNMALSIAERYRAQGISANKFVDSTFYLLLDLITFFDEYHSG 650 660 670 680 690 700 720 730 740 750 760 770 mKIAA0 HIDRAFDIIDRLKLVPLNQESVEERVAAFRNFSDEIRHNLSEVLLATMNILFTQFKRLKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|465 HIDRAFDIIDRLKLVPLNQESVEERVAAFRNFSDEIRHNLSEVLLATMNILFTQFKRLKG 710 720 730 740 750 760 780 790 mKIAA0 TSPSSATRPQRVIEDRDS-VRSQ :::::::::::::::::: .::: gi|465 TSPSSATRPQRVIEDRDSQLRSQARALITFAGMIPYRTSGDTNARLVQMEVLMN 770 780 790 800 810 >>gi|148679174|gb|EDL11121.1| nucleoporin 93, isoform CR (822 aa) initn: 4796 init1: 2736 opt: 4820 Z-score: 5669.7 bits: 1060.0 E(): 0 Smith-Waterman score: 4820; 95.685% identity (96.827% similar) in 788 aa overlap (16-798:1-788) 10 20 30 40 50 60 mKIAA0 RSRQRAATEAASASLMDTEGFGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRS ::::::::::::::::::::::::::::::::::::::::::::: gi|148 MDTEGFGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRS 10 20 30 40 70 80 90 100 110 120 mKIAA0 RTLTRTSQETADVKASVLLGSRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 RTLTRTSQETADVKASVLLGSRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNE 50 60 70 80 90 100 130 140 150 160 170 180 mKIAA0 KDNALLSAIEESRKRTFGMAEEYHRESMLVEWEQVKQRILHTLLASGEDALDFTQESEPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 KDNALLSAIEESRKRTFGMAEEYHRESMLVEWEQVKQRILHTLLASGEDALDFTQESEPS 110 120 130 140 150 160 190 200 210 220 230 240 mKIAA0 YIGDVNPPGRSSLDSIEMAYARQIYIYNEKIVSGHLQPNLVDLCASVAELDDKSISDMWA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 YIGDVNPPGRSSLDSIEMAYARQIYIYNEKIVSGHLQPNLVDLCASVAELDDKSISDMWA 170 180 190 200 210 220 250 260 270 280 290 300 mKIAA0 MVKQMTDVVLTPATDALKSRSSVEVRMDFVKQALGYLEQSYKNYTLVTVFGNLHQAQLGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 MVKQMTDVVLTPATDALKSRSSVEVRMDFVKQALGYLEQSYKNYTLVTVFGNLHQAQLGG 230 240 250 260 270 280 310 320 330 340 350 360 mKIAA0 VPGTYQLVRSFLNIKLPAPSPGLQDGEVEGHPVWALIYYCMRCGDLLAASQVVSRAQHQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VPGTYQLVRSFLNIKLPAPSPGLQDGEVEGHPVWALIYYCMRCGDLLAASQVVSRAQHQL 290 300 310 320 330 340 370 380 390 400 410 420 mKIAA0 GEFKTWFQEYMNSKDRRLSPATENKLRLHYRRALRNNTDPYKRAVYCIIGRCDITDNQSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 GEFKTWFQEYMNSKDRRLSPATENKLRLHYRRALRNNTDPYKRAVYCIIGRCDITDNQSE 350 360 370 380 390 400 430 440 450 460 470 mKIAA0 VADKTEDYLWLKVGTVSF---GCSSPPCS-TLVMHEVCVVLRTGTVDFVSNPLYFFYFQV ::::::::::::.. : : : ::: :: . . .. : :. : :.:::: gi|148 VADKTEDYLWLKLNQVCFDDDGTSSPQDRLTLSQFQKQLLEDYGESHFTVNQQPFLYFQV 410 420 430 440 450 460 480 490 500 510 520 530 mKIAA0 LFLTAQFEAAIAFLFRMERLRCHAVHVALVLFELKLLLKSSGQSAQLLSHEPGDPPCMRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LFLTAQFEAAIAFLFRMERLRCHAVHVALVLFELKLLLKSSGQSAQLLSHEPGDPPCMRR 470 480 490 500 510 520 540 550 560 570 580 590 mKIAA0 LNFVRLLMLYTRKFESTDPREALQYFYFLRDEKDSQGENMFLRCVSELVIESREFDMILG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LNFVRLLMLYTRKFESTDPREALQYFYFLRDEKDSQGENMFLRCVSELVIESREFDMILG 530 540 550 560 570 580 600 610 620 630 640 650 mKIAA0 KLENDGSRKPGVIDKFTSDTKPIINKVASVAENKGLFEEAAKLYDLAKNADKVLELMNKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 KLENDGSRKPGVIDKFTSDTKPIINKVASVAENKGLFEEAAKLYDLAKNADKVLELMNKL 590 600 610 620 630 640 660 670 680 690 700 710 mKIAA0 LSPVVPQISAPQSNKERLKNMALSIAERYRAQGISANKFVDSTFYLLLDLITFFDEYHSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LSPVVPQISAPQSNKERLKNMALSIAERYRAQGISANKFVDSTFYLLLDLITFFDEYHSG 650 660 670 680 690 700 720 730 740 750 760 770 mKIAA0 HIDRAFDIIDRLKLVPLNQESVEERVAAFRNFSDEIRHNLSEVLLATMNILFTQFKRLKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 HIDRAFDIIDRLKLVPLNQESVEERVAAFRNFSDEIRHNLSEVLLATMNILFTQFKRLKG 710 720 730 740 750 760 780 790 mKIAA0 TSPSSATRPQRVIEDRDS-VRSQ :::::::::::::::::: .::: gi|148 TSPSSATRPQRVIEDRDSQLRSQARALITFAGMIPYRTSGDTNARLVQMELLSWEVH 770 780 790 800 810 820 >>gi|18606331|gb|AAH23140.1| Nucleoporin 93 [Mus musculu (819 aa) initn: 4791 init1: 2736 opt: 4815 Z-score: 5663.9 bits: 1058.9 E(): 0 Smith-Waterman score: 4815; 95.558% identity (96.827% similar) in 788 aa overlap (16-798:1-788) 10 20 30 40 50 60 mKIAA0 RSRQRAATEAASASLMDTEGFGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRS ::::::::::::::::::::::::::::::::::::::::::::: gi|186 MDTEGFGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRS 10 20 30 40 70 80 90 100 110 120 mKIAA0 RTLTRTSQETADVKASVLLGSRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 RTLTRTSQETADVKASVLLGSRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNE 50 60 70 80 90 100 130 140 150 160 170 180 mKIAA0 KDNALLSAIEESRKRTFGMAEEYHRESMLVEWEQVKQRILHTLLASGEDALDFTQESEPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 KDNALLSAIEESRKRTFGMAEEYHRESMLVEWEQVKQRILHTLLASGEDALDFTQESEPS 110 120 130 140 150 160 190 200 210 220 230 240 mKIAA0 YIGDVNPPGRSSLDSIEMAYARQIYIYNEKIVSGHLQPNLVDLCASVAELDDKSISDMWA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 YIGDVNPPGRSSLDSIEMAYARQIYIYNEKIVSGHLQPNLVDLCASVAELDDKSISDMWA 170 180 190 200 210 220 250 260 270 280 290 300 mKIAA0 MVKQMTDVVLTPATDALKSRSSVEVRMDFVKQALGYLEQSYKNYTLVTVFGNLHQAQLGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 MVKQMTDVVLTPATDALKSRSSVEVRMDFVKQALGYLEQSYKNYTLVTVFGNLHQAQLGG 230 240 250 260 270 280 310 320 330 340 350 360 mKIAA0 VPGTYQLVRSFLNIKLPAPSPGLQDGEVEGHPVWALIYYCMRCGDLLAASQVVSRAQHQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 VPGTYQLVRSFLNIKLPAPSPGLQDGEVEGHPVWALIYYCMRCGDLLAASQVVSRAQHQL 290 300 310 320 330 340 370 380 390 400 410 420 mKIAA0 GEFKTWFQEYMNSKDRRLSPATENKLRLHYRRALRNNTDPYKRAVYCIIGRCDITDNQSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 GEFKTWFQEYMNSKDRRLSPATENKLRLHYRRALRNNTDPYKRAVYCIIGRCDITDNQSE 350 360 370 380 390 400 430 440 450 460 470 mKIAA0 VADKTEDYLWLKVGTVSF---GCSSPPCS-TLVMHEVCVVLRTGTVDFVSNPLYFFYFQV ::::::::::::.. : : : ::: :: . . .. : :. : :.:::: gi|186 VADKTEDYLWLKLNQVCFDDDGTSSPQDRLTLSQFQKQLLEDYGESHFTVNQQPFLYFQV 410 420 430 440 450 460 480 490 500 510 520 530 mKIAA0 LFLTAQFEAAIAFLFRMERLRCHAVHVALVLFELKLLLKSSGQSAQLLSHEPGDPPCMRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 LFLTAQFEAAIAFLFRMERLRCHAVHVALVLFELKLLLKSSGQSAQLLSHEPGDPPCMRR 470 480 490 500 510 520 540 550 560 570 580 590 mKIAA0 LNFVRLLMLYTRKFESTDPREALQYFYFLRDEKDSQGENMFLRCVSELVIESREFDMILG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 LNFVRLLMLYTRKFESTDPREALQYFYFLRDEKDSQGENMFLRCVSELVIESREFDMILG 530 540 550 560 570 580 600 610 620 630 640 650 mKIAA0 KLENDGSRKPGVIDKFTSDTKPIINKVASVAENKGLFEEAAKLYDLAKNADKVLELMNKL ::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::: gi|186 KLENDGSRKPGVIDKFTSDTKPIINKVASVAENKGLFEEAVKLYDLAKNADKVLELMNKL 590 600 610 620 630 640 660 670 680 690 700 710 mKIAA0 LSPVVPQISAPQSNKERLKNMALSIAERYRAQGISANKFVDSTFYLLLDLITFFDEYHSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 LSPVVPQISAPQSNKERLKNMALSIAERYRAQGISANKFVDSTFYLLLDLITFFDEYHSG 650 660 670 680 690 700 720 730 740 750 760 770 mKIAA0 HIDRAFDIIDRLKLVPLNQESVEERVAAFRNFSDEIRHNLSEVLLATMNILFTQFKRLKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 HIDRAFDIIDRLKLVPLNQESVEERVAAFRNFSDEIRHNLSEVLLATMNILFTQFKRLKG 710 720 730 740 750 760 780 790 mKIAA0 TSPSSATRPQRVIEDRDS-VRSQ :::::::::::::::::: .::: gi|186 TSPSSATRPQRVIEDRDSQLRSQARALITFAGMIPYRTSGDTNARLVQMEVLMN 770 780 790 800 810 >>gi|81884199|sp|Q66HC5.1|NUP93_RAT RecName: Full=Nuclea (819 aa) initn: 4777 init1: 2721 opt: 4801 Z-score: 5647.4 bits: 1055.9 E(): 0 Smith-Waterman score: 4801; 95.178% identity (96.827% similar) in 788 aa overlap (16-798:1-788) 10 20 30 40 50 60 mKIAA0 RSRQRAATEAASASLMDTEGFGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRS ::::::::::::::::::::::::::::::::::::::::::::: gi|818 MDTEGFGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRS 10 20 30 40 70 80 90 100 110 120 mKIAA0 RTLTRTSQETADVKASVLLGSRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 RTLTRTSQETADVKASVLLGSRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNE 50 60 70 80 90 100 130 140 150 160 170 180 mKIAA0 KDNALLSAIEESRKRTFGMAEEYHRESMLVEWEQVKQRILHTLLASGEDALDFTQESEPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 KDNALLSAIEESRKRTFGMAEEYHRESMLVEWEQVKQRILHTLLASGEDALDFTQESEPS 110 120 130 140 150 160 190 200 210 220 230 240 mKIAA0 YIGDVNPPGRSSLDSIEMAYARQIYIYNEKIVSGHLQPNLVDLCASVAELDDKSISDMWA :..::.:::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 YVSDVSPPGRSSLDSIEMAYARQIYIYNEKIVSGHLQPNLVDLCASVAELDDKSISDMWA 170 180 190 200 210 220 250 260 270 280 290 300 mKIAA0 MVKQMTDVVLTPATDALKSRSSVEVRMDFVKQALGYLEQSYKNYTLVTVFGNLHQAQLGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 MVKQMTDVVLTPATDALKSRSSVEVRMDFVKQALGYLEQSYKNYTLVTVFGNLHQAQLGG 230 240 250 260 270 280 310 320 330 340 350 360 mKIAA0 VPGTYQLVRSFLNIKLPAPSPGLQDGEVEGHPVWALIYYCMRCGDLLAASQVVSRAQHQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 VPGTYQLVRSFLNIKLPAPSPGLQDGEVEGHPVWALIYYCMRCGDLLAASQVVSRAQHQL 290 300 310 320 330 340 370 380 390 400 410 420 mKIAA0 GEFKTWFQEYMNSKDRRLSPATENKLRLHYRRALRNNTDPYKRAVYCIIGRCDITDNQSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 GEFKTWFQEYMNSKDRRLSPATENKLRLHYRRALRNNTDPYKRAVYCIIGRCDITDNQSE 350 360 370 380 390 400 430 440 450 460 470 mKIAA0 VADKTEDYLWLKVGTVSF---GCSSPPCS-TLVMHEVCVVLRTGTVDFVSNPLYFFYFQV ::::::::::::.. : : : ::: :: . . .. : :. : :.:::: gi|818 VADKTEDYLWLKLNQVCFDDDGTSSPQDRLTLSQFQKQLLEDYGESHFTVNQQPFLYFQV 410 420 430 440 450 460 480 490 500 510 520 530 mKIAA0 LFLTAQFEAAIAFLFRMERLRCHAVHVALVLFELKLLLKSSGQSAQLLSHEPGDPPCMRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 LFLTAQFEAAIAFLFRMERLRCHAVHVALVLFELKLLLKSSGQSAQLLSHEPGDPPCMRR 470 480 490 500 510 520 540 550 560 570 580 590 mKIAA0 LNFVRLLMLYTRKFESTDPREALQYFYFLRDEKDSQGENMFLRCVSELVIESREFDMILG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 LNFVRLLMLYTRKFESTDPREALQYFYFLRDEKDSQGENMFLRCVSELVIESREFDMILG 530 540 550 560 570 580 600 610 620 630 640 650 mKIAA0 KLENDGSRKPGVIDKFTSDTKPIINKVASVAENKGLFEEAAKLYDLAKNADKVLELMNKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 KLENDGSRKPGVIDKFTSDTKPIINKVASVAENKGLFEEAAKLYDLAKNADKVLELMNKL 590 600 610 620 630 640 660 670 680 690 700 710 mKIAA0 LSPVVPQISAPQSNKERLKNMALSIAERYRAQGISANKFVDSTFYLLLDLITFFDEYHSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 LSPVVPQISAPQSNKERLKNMALSIAERYRAQGISANKFVDSTFYLLLDLITFFDEYHSG 650 660 670 680 690 700 720 730 740 750 760 770 mKIAA0 HIDRAFDIIDRLKLVPLNQESVEERVAAFRNFSDEIRHNLSEVLLATMNILFTQFKRLKG :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: gi|818 HIDRAFDIIDRLKLVPLNQESMEERVAAFRNFSDEIRHNLSEVLLATMNILFTQFKRLKG 710 720 730 740 750 760 780 790 mKIAA0 TSPSSATRPQRVIEDRDS-VRSQ :::::::::::::::::: .::: gi|818 TSPSSATRPQRVIEDRDSQLRSQARALITFAGMIPYRTSGDTNARLVQMEVLMN 770 780 790 800 810 >>gi|149032456|gb|EDL87347.1| rCG39108, isoform CRA_a [R (822 aa) initn: 4777 init1: 2721 opt: 4801 Z-score: 5647.4 bits: 1055.9 E(): 0 Smith-Waterman score: 4801; 95.178% identity (96.827% similar) in 788 aa overlap (16-798:1-788) 10 20 30 40 50 60 mKIAA0 RSRQRAATEAASASLMDTEGFGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRS ::::::::::::::::::::::::::::::::::::::::::::: gi|149 MDTEGFGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRS 10 20 30 40 70 80 90 100 110 120 mKIAA0 RTLTRTSQETADVKASVLLGSRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 RTLTRTSQETADVKASVLLGSRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNE 50 60 70 80 90 100 130 140 150 160 170 180 mKIAA0 KDNALLSAIEESRKRTFGMAEEYHRESMLVEWEQVKQRILHTLLASGEDALDFTQESEPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 KDNALLSAIEESRKRTFGMAEEYHRESMLVEWEQVKQRILHTLLASGEDALDFTQESEPS 110 120 130 140 150 160 190 200 210 220 230 240 mKIAA0 YIGDVNPPGRSSLDSIEMAYARQIYIYNEKIVSGHLQPNLVDLCASVAELDDKSISDMWA :..::.:::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 YVSDVSPPGRSSLDSIEMAYARQIYIYNEKIVSGHLQPNLVDLCASVAELDDKSISDMWA 170 180 190 200 210 220 250 260 270 280 290 300 mKIAA0 MVKQMTDVVLTPATDALKSRSSVEVRMDFVKQALGYLEQSYKNYTLVTVFGNLHQAQLGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 MVKQMTDVVLTPATDALKSRSSVEVRMDFVKQALGYLEQSYKNYTLVTVFGNLHQAQLGG 230 240 250 260 270 280 310 320 330 340 350 360 mKIAA0 VPGTYQLVRSFLNIKLPAPSPGLQDGEVEGHPVWALIYYCMRCGDLLAASQVVSRAQHQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 VPGTYQLVRSFLNIKLPAPSPGLQDGEVEGHPVWALIYYCMRCGDLLAASQVVSRAQHQL 290 300 310 320 330 340 370 380 390 400 410 420 mKIAA0 GEFKTWFQEYMNSKDRRLSPATENKLRLHYRRALRNNTDPYKRAVYCIIGRCDITDNQSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 GEFKTWFQEYMNSKDRRLSPATENKLRLHYRRALRNNTDPYKRAVYCIIGRCDITDNQSE 350 360 370 380 390 400 430 440 450 460 470 mKIAA0 VADKTEDYLWLKVGTVSF---GCSSPPCS-TLVMHEVCVVLRTGTVDFVSNPLYFFYFQV ::::::::::::.. : : : ::: :: . . .. : :. : :.:::: gi|149 VADKTEDYLWLKLNQVCFDDDGTSSPQDRLTLSQFQKQLLEDYGESHFTVNQQPFLYFQV 410 420 430 440 450 460 480 490 500 510 520 530 mKIAA0 LFLTAQFEAAIAFLFRMERLRCHAVHVALVLFELKLLLKSSGQSAQLLSHEPGDPPCMRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LFLTAQFEAAIAFLFRMERLRCHAVHVALVLFELKLLLKSSGQSAQLLSHEPGDPPCMRR 470 480 490 500 510 520 540 550 560 570 580 590 mKIAA0 LNFVRLLMLYTRKFESTDPREALQYFYFLRDEKDSQGENMFLRCVSELVIESREFDMILG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LNFVRLLMLYTRKFESTDPREALQYFYFLRDEKDSQGENMFLRCVSELVIESREFDMILG 530 540 550 560 570 580 600 610 620 630 640 650 mKIAA0 KLENDGSRKPGVIDKFTSDTKPIINKVASVAENKGLFEEAAKLYDLAKNADKVLELMNKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 KLENDGSRKPGVIDKFTSDTKPIINKVASVAENKGLFEEAAKLYDLAKNADKVLELMNKL 590 600 610 620 630 640 660 670 680 690 700 710 mKIAA0 LSPVVPQISAPQSNKERLKNMALSIAERYRAQGISANKFVDSTFYLLLDLITFFDEYHSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LSPVVPQISAPQSNKERLKNMALSIAERYRAQGISANKFVDSTFYLLLDLITFFDEYHSG 650 660 670 680 690 700 720 730 740 750 760 770 mKIAA0 HIDRAFDIIDRLKLVPLNQESVEERVAAFRNFSDEIRHNLSEVLLATMNILFTQFKRLKG :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: gi|149 HIDRAFDIIDRLKLVPLNQESMEERVAAFRNFSDEIRHNLSEVLLATMNILFTQFKRLKG 710 720 730 740 750 760 780 790 mKIAA0 TSPSSATRPQRVIEDRDS-VRSQ :::::::::::::::::: .::: gi|149 TSPSSATRPQRVIEDRDSQLRSQARALITFAGMIPYRTSGDTNARLVQMEFPSWEVH 770 780 790 800 810 820 >>gi|114662650|ref|XP_510982.2| PREDICTED: nucleoporin 9 (921 aa) initn: 4732 init1: 2686 opt: 4756 Z-score: 5593.7 bits: 1046.1 E(): 0 Smith-Waterman score: 4756; 92.519% identity (96.135% similar) in 802 aa overlap (2-798:89-890) 10 20 30 mKIAA0 RSRQRAATEAASASLMDTEGFGELLQQAEQL : ..:. .::: :::::::::::::::: gi|114 ATLTTDHKPPQWDPVYSPKIPVLGTSVPRHSAAETAVAQGSASPMDTEGFGELLQQAEQL 60 70 80 90 100 110 40 50 60 70 80 90 mKIAA0 AAETEGISELPHVERNLQEIQQAGERLRSRTLTRTSQETADVKASVLLGSRGLDISHISQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 AAETEGISELPHVERNLQEIQQAGERLRSRTLTRTSQETADVKASVLLGSRGLDISHISQ 120 130 140 150 160 170 100 110 120 130 140 150 mKIAA0 RLESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRKRTFGMAEEYHRESMLVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RLESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRKRTFGMAEEYHRESMLVE 180 190 200 210 220 230 160 170 180 190 200 210 mKIAA0 WEQVKQRILHTLLASGEDALDFTQESEPSYIGDVNPPGRSSLDSIEMAYARQIYIYNEKI :::::::::::::::::::::::::::::::.::.::::::::.:::::::::::::::: gi|114 WEQVKQRILHTLLASGEDALDFTQESEPSYISDVGPPGRSSLDNIEMAYARQIYIYNEKI 240 250 260 270 280 290 220 230 240 250 260 270 mKIAA0 VSGHLQPNLVDLCASVAELDDKSISDMWAMVKQMTDVVLTPATDALKSRSSVEVRMDFVK :.::::::::::::::::::::::::::.::::::::.:::::::::.::::::::.::. gi|114 VNGHLQPNLVDLCASVAELDDKSISDMWTMVKQMTDVLLTPATDALKNRSSVEVRMEFVR 300 310 320 330 340 350 280 290 300 310 320 330 mKIAA0 QALGYLEQSYKNYTLVTVFGNLHQAQLGGVPGTYQLVRSFLNIKLPAPSPGLQDGEVEGH :::.:::::::::::::::::::::::::::::::::::::::::::: ::::::::::: gi|114 QALAYLEQSYKNYTLVTVFGNLHQAQLGGVPGTYQLVRSFLNIKLPAPLPGLQDGEVEGH 360 370 380 390 400 410 340 350 360 370 380 390 mKIAA0 PVWALIYYCMRCGDLLAASQVVSRAQHQLGEFKTWFQEYMNSKDRRLSPATENKLRLHYR ::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::: gi|114 PVWALIYYCMRCGDLLAASQVVNRAQHQLGEFKTWFQEYMNSKDRRLSPATENKLRLHYR 420 430 440 450 460 470 400 410 420 430 440 mKIAA0 RALRNNTDPYKRAVYCIIGRCDITDNQSEVADKTEDYLWLKVGTVSF---GCSSPPCS-T ::::::::::::::::::::::.::::::::::::::::::.. : : : ::: : gi|114 RALRNNTDPYKRAVYCIIGRCDVTDNQSEVADKTEDYLWLKLNQVCFDDDGTSSPQDRLT 480 490 500 510 520 530 450 460 470 480 490 500 mKIAA0 LVMHEVCVVLRTGTVDFVSNPLYFFYFQVLFLTAQFEAAIAFLFRMERLRCHAVHVALVL : . . .. : :. : :.::::::::::::::.:::::::::::::::::::: gi|114 LSQFQKQLLEDYGESHFTVNQQPFLYFQVLFLTAQFEAAVAFLFRMERLRCHAVHVALVL 540 550 560 570 580 590 510 520 530 540 550 560 mKIAA0 FELKLLLKSSGQSAQLLSHEPGDPPCMRRLNFVRLLMLYTRKFESTDPREALQYFYFLRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 FELKLLLKSSGQSAQLLSHEPGDPPCMRRLNFVRLLMLYTRKFESTDPREALQYFYFLRD 600 610 620 630 640 650 570 580 590 600 610 620 mKIAA0 EKDSQGENMFLRCVSELVIESREFDMILGKLENDGSRKPGVIDKFTSDTKPIINKVASVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 EKDSQGENMFLRCVSELVIESREFDMILGKLENDGSRKPGVIDKFTSDTKPIINKVASVA 660 670 680 690 700 710 630 640 650 660 670 680 mKIAA0 ENKGLFEEAAKLYDLAKNADKVLELMNKLLSPVVPQISAPQSNKERLKNMALSIAERYRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ENKGLFEEAAKLYDLAKNADKVLELMNKLLSPVVPQISAPQSNKERLKNMALSIAERYRA 720 730 740 750 760 770 690 700 710 720 730 740 mKIAA0 QGISANKFVDSTFYLLLDLITFFDEYHSGHIDRAFDIIDRLKLVPLNQESVEERVAAFRN ::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::: gi|114 QGISANKFVDSTFYLLLDLITFFDEYHSGHIDRAFDIIERLKLVPLNQESVEERVAAFRN 780 790 800 810 820 830 750 760 770 780 790 mKIAA0 FSDEIRHNLSEVLLATMNILFTQFKRLKGTSPSSATRPQRVIEDRDS-VRSQ ::::::::::::::::::::::::::::::::::..::::::::::: .::: gi|114 FSDEIRHNLSEVLLATMNILFTQFKRLKGTSPSSSSRPQRVIEDRDSQLRSQARTLITFA 840 850 860 870 880 890 gi|114 GMIPYRTSGDTNARLVQMEVLMN 900 910 920 >>gi|218546716|sp|A5PJZ5.1|NUP93_BOVIN RecName: Full=Nuc (819 aa) initn: 4723 init1: 2664 opt: 4747 Z-score: 5583.8 bits: 1044.1 E(): 0 Smith-Waterman score: 4747; 93.655% identity (96.701% similar) in 788 aa overlap (16-798:1-788) 10 20 30 40 50 60 mKIAA0 RSRQRAATEAASASLMDTEGFGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRS ::::::::::::::::::::::::::::::::::::::::::::: gi|218 MDTEGFGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRS 10 20 30 40 70 80 90 100 110 120 mKIAA0 RTLTRTSQETADVKASVLLGSRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|218 RTLTRTSQETADVKASVLLGSRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNE 50 60 70 80 90 100 130 140 150 160 170 180 mKIAA0 KDNALLSAIEESRKRTFGMAEEYHRESMLVEWEQVKQRILHTLLASGEDALDFTQESEPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|218 KDNALLSAIEESRKRTFGMAEEYHRESMLVEWEQVKQRILHTLLASGEDALDFTQESEPS 110 120 130 140 150 160 190 200 210 220 230 240 mKIAA0 YIGDVNPPGRSSLDSIEMAYARQIYIYNEKIVSGHLQPNLVDLCASVAELDDKSISDMWA ::.:..::::::::::::::::::::::::::.:::::::.::::::.:::::.:::::: gi|218 YISDAGPPGRSSLDSIEMAYARQIYIYNEKIVNGHLQPNLLDLCASVTELDDKNISDMWA 170 180 190 200 210 220 250 260 270 280 290 300 mKIAA0 MVKQMTDVVLTPATDALKSRSSVEVRMDFVKQALGYLEQSYKNYTLVTVFGNLHQAQLGG ::::::::.:.:::::::::.::::::.::.::::::::::::::::::::::::::::: gi|218 MVKQMTDVLLVPATDALKSRNSVEVRMEFVRQALGYLEQSYKNYTLVTVFGNLHQAQLGG 230 240 250 260 270 280 310 320 330 340 350 360 mKIAA0 VPGTYQLVRSFLNIKLPAPSPGLQDGEVEGHPVWALIYYCMRCGDLLAASQVVSRAQHQL ::::::::::::::::::: :::::::::::::::::::::::::::::::::.:::::: gi|218 VPGTYQLVRSFLNIKLPAPLPGLQDGEVEGHPVWALIYYCMRCGDLLAASQVVNRAQHQL 290 300 310 320 330 340 370 380 390 400 410 420 mKIAA0 GEFKTWFQEYMNSKDRRLSPATENKLRLHYRRALRNNTDPYKRAVYCIIGRCDITDNQSE :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|218 GEFKTWFQEYMNSKDRRLSPATENKLRLHYRRALRNNTDPYKRAVYCIIGRCDVTDNQSE 350 360 370 380 390 400 430 440 450 460 470 mKIAA0 VADKTEDYLWLKVGTVSF---GCSSPPCS-TLVMHEVCVVLRTGTVDFVSNPLYFFYFQV ::::::::::::.. : : : ::: :: . . .. : :. : :.:::: gi|218 VADKTEDYLWLKLNQVCFDDDGTSSPQDRLTLSQFQKQLLEDYGESHFTVNQQPFLYFQV 410 420 430 440 450 460 480 490 500 510 520 530 mKIAA0 LFLTAQFEAAIAFLFRMERLRCHAVHVALVLFELKLLLKSSGQSAQLLSHEPGDPPCMRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|218 LFLTAQFEAAIAFLFRMERLRCHAVHVALVLFELKLLLKSSGQSAQLLSHEPGDPPCMRR 470 480 490 500 510 520 540 550 560 570 580 590 mKIAA0 LNFVRLLMLYTRKFESTDPREALQYFYFLRDEKDSQGENMFLRCVSELVIESREFDMILG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|218 LNFVRLLMLYTRKFESTDPREALQYFYFLRDEKDSQGENMFLRCVSELVIESREFDMILG 530 540 550 560 570 580 600 610 620 630 640 650 mKIAA0 KLENDGSRKPGVIDKFTSDTKPIINKVASVAENKGLFEEAAKLYDLAKNADKVLELMNKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|218 KLENDGSRKPGVIDKFTSDTKPIINKVASVAENKGLFEEAAKLYDLAKNADKVLELMNKL 590 600 610 620 630 640 660 670 680 690 700 710 mKIAA0 LSPVVPQISAPQSNKERLKNMALSIAERYRAQGISANKFVDSTFYLLLDLITFFDEYHSG :::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|218 LSPIVPQISAPQSNKERLKNMALSIAERYRAQGISANKFVDSTFYLLLDLITFFDEYHSG 650 660 670 680 690 700 720 730 740 750 760 770 mKIAA0 HIDRAFDIIDRLKLVPLNQESVEERVAAFRNFSDEIRHNLSEVLLATMNILFTQFKRLKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|218 HIDRAFDIIDRLKLVPLNQESVEERVAAFRNFSDEIRHNLSEVLLATMNILFTQFKRLKG 710 720 730 740 750 760 780 790 mKIAA0 TSPSSATRPQRVIEDRDS-VRSQ :::::::::::::::::: .::: gi|218 TSPSSATRPQRVIEDRDSQLRSQARALITFAGMIPYRTSGDTNARLVQMEVLMN 770 780 790 800 810 >>gi|116242684|sp|Q8N1F7.2|NUP93_HUMAN RecName: Full=Nuc (819 aa) initn: 4712 init1: 2670 opt: 4736 Z-score: 5570.8 bits: 1041.7 E(): 0 Smith-Waterman score: 4736; 93.401% identity (96.701% similar) in 788 aa overlap (16-798:1-788) 10 20 30 40 50 60 mKIAA0 RSRQRAATEAASASLMDTEGFGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRS ::::::::::::::::::::::::::::::::::::::::::::: gi|116 MDTEGFGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRS 10 20 30 40 70 80 90 100 110 120 mKIAA0 RTLTRTSQETADVKASVLLGSRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 RTLTRTSQETADVKASVLLGSRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNE 50 60 70 80 90 100 130 140 150 160 170 180 mKIAA0 KDNALLSAIEESRKRTFGMAEEYHRESMLVEWEQVKQRILHTLLASGEDALDFTQESEPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 KDNALLSAIEESRKRTFGMAEEYHRESMLVEWEQVKQRILHTLLASGEDALDFTQESEPS 110 120 130 140 150 160 190 200 210 220 230 240 mKIAA0 YIGDVNPPGRSSLDSIEMAYARQIYIYNEKIVSGHLQPNLVDLCASVAELDDKSISDMWA ::.::.::::::::.:::::::::::::::::.::::::::::::::::::::::::::. gi|116 YISDVGPPGRSSLDNIEMAYARQIYIYNEKIVNGHLQPNLVDLCASVAELDDKSISDMWT 170 180 190 200 210 220 250 260 270 280 290 300 mKIAA0 MVKQMTDVVLTPATDALKSRSSVEVRMDFVKQALGYLEQSYKNYTLVTVFGNLHQAQLGG ::::::::.:::::::::.::::::::.::.:::.::::::::::::::::::::::::: gi|116 MVKQMTDVLLTPATDALKNRSSVEVRMEFVRQALAYLEQSYKNYTLVTVFGNLHQAQLGG 230 240 250 260 270 280 310 320 330 340 350 360 mKIAA0 VPGTYQLVRSFLNIKLPAPSPGLQDGEVEGHPVWALIYYCMRCGDLLAASQVVSRAQHQL ::::::::::::::::::: :::::::::::::::::::::::::::::::::.:::::: gi|116 VPGTYQLVRSFLNIKLPAPLPGLQDGEVEGHPVWALIYYCMRCGDLLAASQVVNRAQHQL 290 300 310 320 330 340 370 380 390 400 410 420 mKIAA0 GEFKTWFQEYMNSKDRRLSPATENKLRLHYRRALRNNTDPYKRAVYCIIGRCDITDNQSE :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|116 GEFKTWFQEYMNSKDRRLSPATENKLRLHYRRALRNNTDPYKRAVYCIIGRCDVTDNQSE 350 360 370 380 390 400 430 440 450 460 470 mKIAA0 VADKTEDYLWLKVGTVSF---GCSSPPCS-TLVMHEVCVVLRTGTVDFVSNPLYFFYFQV ::::::::::::.. : : : ::: :: . . .. : :. : :.:::: gi|116 VADKTEDYLWLKLNQVCFDDDGTSSPQDRLTLSQFQKQLLEDYGESHFTVNQQPFLYFQV 410 420 430 440 450 460 480 490 500 510 520 530 mKIAA0 LFLTAQFEAAIAFLFRMERLRCHAVHVALVLFELKLLLKSSGQSAQLLSHEPGDPPCMRR ::::::::::.::::::::::::::::::::::::::::::::::::::::::::::.:: gi|116 LFLTAQFEAAVAFLFRMERLRCHAVHVALVLFELKLLLKSSGQSAQLLSHEPGDPPCLRR 470 480 490 500 510 520 540 550 560 570 580 590 mKIAA0 LNFVRLLMLYTRKFESTDPREALQYFYFLRDEKDSQGENMFLRCVSELVIESREFDMILG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 LNFVRLLMLYTRKFESTDPREALQYFYFLRDEKDSQGENMFLRCVSELVIESREFDMILG 530 540 550 560 570 580 600 610 620 630 640 650 mKIAA0 KLENDGSRKPGVIDKFTSDTKPIINKVASVAENKGLFEEAAKLYDLAKNADKVLELMNKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 KLENDGSRKPGVIDKFTSDTKPIINKVASVAENKGLFEEAAKLYDLAKNADKVLELMNKL 590 600 610 620 630 640 660 670 680 690 700 710 mKIAA0 LSPVVPQISAPQSNKERLKNMALSIAERYRAQGISANKFVDSTFYLLLDLITFFDEYHSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 LSPVVPQISAPQSNKERLKNMALSIAERYRAQGISANKFVDSTFYLLLDLITFFDEYHSG 650 660 670 680 690 700 720 730 740 750 760 770 mKIAA0 HIDRAFDIIDRLKLVPLNQESVEERVAAFRNFSDEIRHNLSEVLLATMNILFTQFKRLKG :::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 HIDRAFDIIERLKLVPLNQESVEERVAAFRNFSDEIRHNLSEVLLATMNILFTQFKRLKG 710 720 730 740 750 760 780 790 mKIAA0 TSPSSATRPQRVIEDRDS-VRSQ :::::..::::::::::: .::: gi|116 TSPSSSSRPQRVIEDRDSQLRSQARTLITFAGMIPYRTSGDTNARLVQMEVLMN 770 780 790 800 810 >>gi|21706468|gb|AAH34346.1| Nucleoporin 93kDa [Homo sap (819 aa) initn: 4706 init1: 2670 opt: 4730 Z-score: 5563.8 bits: 1040.4 E(): 0 Smith-Waterman score: 4730; 93.274% identity (96.574% similar) in 788 aa overlap (16-798:1-788) 10 20 30 40 50 60 mKIAA0 RSRQRAATEAASASLMDTEGFGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRS ::::::::::::::::::::::::::::::::::::::::::::: gi|217 MDTEGFGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRS 10 20 30 40 70 80 90 100 110 120 mKIAA0 RTLTRTSQETADVKASVLLGSRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 RTLTRTSQETADVKASVLLGSRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNE 50 60 70 80 90 100 130 140 150 160 170 180 mKIAA0 KDNALLSAIEESRKRTFGMAEEYHRESMLVEWEQVKQRILHTLLASGEDALDFTQESEPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 KDNALLSAIEESRKRTFGMAEEYHRESMLVEWEQVKQRILHTLLASGEDALDFTQESEPS 110 120 130 140 150 160 190 200 210 220 230 240 mKIAA0 YIGDVNPPGRSSLDSIEMAYARQIYIYNEKIVSGHLQPNLVDLCASVAELDDKSISDMWA ::.::.::::::::.:::::::::::::::::.::::::::::::::::::::::::::. gi|217 YISDVGPPGRSSLDNIEMAYARQIYIYNEKIVNGHLQPNLVDLCASVAELDDKSISDMWT 170 180 190 200 210 220 250 260 270 280 290 300 mKIAA0 MVKQMTDVVLTPATDALKSRSSVEVRMDFVKQALGYLEQSYKNYTLVTVFGNLHQAQLGG ::::::::.:::::::::.::::::::.::.:::.::::::::::::::::::::::::: gi|217 MVKQMTDVLLTPATDALKNRSSVEVRMEFVRQALAYLEQSYKNYTLVTVFGNLHQAQLGG 230 240 250 260 270 280 310 320 330 340 350 360 mKIAA0 VPGTYQLVRSFLNIKLPAPSPGLQDGEVEGHPVWALIYYCMRCGDLLAASQVVSRAQHQL ::::::::::::::::::: :::::::::::::::::::::::::::::::::.:::::: gi|217 VPGTYQLVRSFLNIKLPAPLPGLQDGEVEGHPVWALIYYCMRCGDLLAASQVVNRAQHQL 290 300 310 320 330 340 370 380 390 400 410 420 mKIAA0 GEFKTWFQEYMNSKDRRLSPATENKLRLHYRRALRNNTDPYKRAVYCIIGRCDITDNQSE :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|217 GEFKTWFQEYMNSKDRRLSPATENKLRLHYRRALRNNTDPYKRAVYCIIGRCDVTDNQSE 350 360 370 380 390 400 430 440 450 460 470 mKIAA0 VADKTEDYLWLKVGTVSF---GCSSPPCS-TLVMHEVCVVLRTGTVDFVSNPLYFFYFQV ::::::::::::.. : : : ::: :: . . .. : :. : :.:::: gi|217 VADKTEDYLWLKLNQVCFDDDGTSSPQDRLTLSQFQKQLLEDYGESHFTVNQQPFLYFQV 410 420 430 440 450 460 480 490 500 510 520 530 mKIAA0 LFLTAQFEAAIAFLFRMERLRCHAVHVALVLFELKLLLKSSGQSAQLLSHEPGDPPCMRR ::::::::::.:::::::::::::::::::::::::::::::: :::::::::::::.:: gi|217 LFLTAQFEAAVAFLFRMERLRCHAVHVALVLFELKLLLKSSGQRAQLLSHEPGDPPCLRR 470 480 490 500 510 520 540 550 560 570 580 590 mKIAA0 LNFVRLLMLYTRKFESTDPREALQYFYFLRDEKDSQGENMFLRCVSELVIESREFDMILG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 LNFVRLLMLYTRKFESTDPREALQYFYFLRDEKDSQGENMFLRCVSELVIESREFDMILG 530 540 550 560 570 580 600 610 620 630 640 650 mKIAA0 KLENDGSRKPGVIDKFTSDTKPIINKVASVAENKGLFEEAAKLYDLAKNADKVLELMNKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 KLENDGSRKPGVIDKFTSDTKPIINKVASVAENKGLFEEAAKLYDLAKNADKVLELMNKL 590 600 610 620 630 640 660 670 680 690 700 710 mKIAA0 LSPVVPQISAPQSNKERLKNMALSIAERYRAQGISANKFVDSTFYLLLDLITFFDEYHSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 LSPVVPQISAPQSNKERLKNMALSIAERYRAQGISANKFVDSTFYLLLDLITFFDEYHSG 650 660 670 680 690 700 720 730 740 750 760 770 mKIAA0 HIDRAFDIIDRLKLVPLNQESVEERVAAFRNFSDEIRHNLSEVLLATMNILFTQFKRLKG :::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 HIDRAFDIIERLKLVPLNQESVEERVAAFRNFSDEIRHNLSEVLLATMNILFTQFKRLKG 710 720 730 740 750 760 780 790 mKIAA0 TSPSSATRPQRVIEDRDS-VRSQ :::::..::::::::::: .::: gi|217 TSPSSSSRPQRVIEDRDSQLRSQARTLITFAGMIPYRTSGDTNARLVQMEVLMN 770 780 790 800 810 798 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Thu Mar 12 20:35:20 2009 done: Thu Mar 12 20:43:48 2009 Total Scan time: 1112.700 Total Display time: 0.380 Function used was FASTA [version 34.26.5 April 26, 2007]