ROUGE

Gene/Protein Characteristic Table for mKIAA0062

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK122197
Description :	solute carrier family 39 (zinc transporter), member 14.
Clone Name :	mbh04536 [Vector Info]
Source :	Mouse brain

Features of the cloned DNA sequence	Description

Length: 4388 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
YES

Integrity of 3' end

Length of 3'UTR 3589 bp

Genome contig ID gi65540054r_64519459
PolyA signal sequence
(AATAAA,-18)
+----*----+----*----+----*----+----
ATTTGTAAGATTCTATAAATAAAGCTATATTCTGT
Flanking genome sequence
(215332 - 215283)
----+----*----+----*----+----*----+----*----+----*
ACATCCTGTAATCCAAGAACTTGAGGCTGTGTTAGTATTCCTATTGCTGA

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA0062 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA0062	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 2..496, 798..1283
Length: 326 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
Q75N73	4.5e-64	72.9	Zinc transporte...	Mus musculus
AAH21530	1.3e-62	68.5	Slc39a14 protei...	Mus musculus
EDL35907	1.4e-62	68.5	solute carrier ...	Mus musculus
EDM02215	7.1e-62	63.5	solute carrier ...	Rattus norvegicus
XP_543250	2.1e-60	60.9	similar to solu...	Canis lupus fam...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	ROUGE_ID
AK122483	2.2e-30	50.3	mKIAA1265

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR003689 107 317 PF02535 Zinc/iron permease

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR003689	107	317	PF02535	Zinc/iron permease

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 113 134 GFLCVTVISLCSLMGASVVPFM

178 200 DGLHNFIDGLAIGASFTVSVFQG

239 261 SACCCYLGLAFGILAGSHFSANW

298 319 PFVIQNLGLLTGFSIMLVLTMY

Method	From	To	amino acid sequence
SOSUI	113	134	GFLCVTVISLCSLMGASVVPFM
178	200	DGLHNFIDGLAIGASFTVSVFQG
239	261	SACCCYLGLAFGILAGSHFSANW
298	319	PFVIQNLGLLTGFSIMLVLTMY

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	YES

Length of 3'UTR	3589 bp
Genome contig ID	gi65540054r_64519459
PolyA signal sequence (AATAAA,-18)	+--------+--------+----*----+---- ATTTGTAAGATTCTATAAATAAAGCTATATTCTGT
Flanking genome sequence (215332 - 215283)	----+--------+--------+--------+--------+----* ACATCCTGTAATCCAAGAACTTGAGGCTGTGTTAGTATTCCTATTGCTGA

Gene/Protein Characteristic Table for mKIAA0062

Features of the cloned DNA sequence

Features of the protein sequence