FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0062.ptfa, 326 aa
 vs ./tmplib.26680 library

1768691 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.4296+/-0.00347; mu= 13.2747+/- 0.232
 mean_var=74.3900+/-17.010, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1487

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1265  ( 661 res)   mbh02708                   ( 661)  549  127 2.2e-30


>>mKIAA1265  ( 661 res)   mbh02708                        (661 aa)
 initn: 705 init1: 331 opt: 549  Z-score: 637.8  bits: 127.3 E(): 2.2e-30
Smith-Waterman score: 549;  50.311% identity (51.923% ungapped) in 161 aa overlap (167-323:496-655)

        140       150       160       170       180       190      
mKIAA0 TFYKRLLLYFIALAIGTLYSNALFQLIPEDIGTLAWMITLSDGLHNFIDGLAIGASFTVS
                                     :...:::. ..::.::: :::::::.:...
mKIAA1 LRKHSHQWHHRHAHHSHGPCHSGSDLKETGIANIAWMVIMGDGIHNFSDGLAIGAAFSAG
         470       480       490       500       510       520     

        200       210       220       230       240       250      
mKIAA0 VFQGISTSVAILCEEFPHELGDFVILLNAGMSIQQALFFNFLSACCCYLGLAFGILAGSH
       .  :::::.:..:.:.:::::::..::.:::...::. .:.:::   :.:. .:  .: .
mKIAA1 LTGGISTSIAVFCHELPHELGDFAVLLKAGMTVKQAIVYNLLSAMMAYIGMLIGTAVG-Q
         530       540       550       560       570       580     

        260          270       280       290        300       310  
mKIAA0 FSAN---WIFALAGGMFLYIALADMFPEMNEVCQEDEKNDSFLV-PFVIQNLGLLTGFSI
       .. :   ::::...:::::.::.::.::: .   . :..    :  :..:::::: ::.:
mKIAA1 YANNITLWIFAITAGMFLYVALVDMLPEMLHGDGDHEEHGFCPVGQFILQNLGLLFGFAI
          590       600       610       620       630       640    

            320         
mKIAA0 MLVLTMYSGQIQIG   
       :::...:  .:      
mKIAA1 MLVIALYEDKIVYDIQF
          650       660 




326 residues in 1 query   sequences
1768691 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:11:28 2006 done: Mon Mar 27 10:11:29 2006
 Scan time:  0.540 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]