ROUGE

Gene/Protein Characteristic Table for mKIAA0038

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK122194
Description :	Eukaryotic translation initiation factor 4H.
Clone Name :	mbg08496 [Vector Info]
Source :	Mouse brain

Features of the cloned DNA sequence	Description

Length: 5630 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
YES
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA0038 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA0038	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 3..440, 3723..3998
Length: 237 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
AAD34860	2.6e-88	100.0	Wbscr1 alternat...	Mus musculus
AAF75557	9.4e-88	99.1	wbscr1 [Homo sa...	Homo sapiens
BAE89020	1.1e-87	98.7	unnamed protein...	Macaca fascicularis
XP_527788	2.5e-87	98.7	similar to Wbsc...	Pan troglodytes
Q1JPH6	5.2e-87	98.2	Eukaryotic tran...	Bos taurus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR000504 53 122 PF00076 RNA-binding region RNP-1 (RNA recognition motif)

HMMSmart IPR000504 52 123 SM00360 RNA-binding region RNP-1 (RNA recognition motif)

ProfileScan IPR000504 51 127 PS50102 RNA-binding region RNP-1 (RNA recognition motif)

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

- - - -

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR000504	53	122	PF00076	RNA-binding region RNP-1 (RNA recognition motif)
HMMSmart	IPR000504	52	123	SM00360	RNA-binding region RNP-1 (RNA recognition motif)
ProfileScan	IPR000504	51	127	PS50102	RNA-binding region RNP-1 (RNA recognition motif)

Method	From	To	amino acid sequence
-	-	-	-

How to obtain mKIAA clone(s) How to obtain anti mKIAA antibodies Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	YES

Gene/Protein Characteristic Table for mKIAA0038

Features of the cloned DNA sequence

Features of the protein sequence