ROUGE

Gene/Protein Characteristic Table for mKIAA0024

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK172873
Description :	Phosphatidylserine synthase I.
Clone Name :	mth00575 [Vector Info]
Source :	Mouse adult thymus

Features of the cloned DNA sequence	Description

Length: 4810 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
YES

Integrity of 3' end

Length of 3'UTR 3249 bp

Genome contig ID gi65535943f_63435288
PolyA signal sequence
(ATTAAA,-12)
+----*----+----*----+----*----+----
TTGTTTTAAATATATCAGTTCACATTAAACAGCTC
Flanking genome sequence
(165137 - 165186)
----+----*----+----*----+----*----+----*----+----*
ATCAATGATCTGTCTTTGTTAGAATGATGTTTCTTTGTATCTTATTAGTC

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA0024 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA0024	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 614..1552, 3362..3886
Length: 487 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
Q99LH2	2.2e-215	99.8	Phosphatidylser...	Mus musculus
BAC40117	3.6e-214	99.4	unnamed protein...	Mus musculus
AAH87129	2e-212	98.5	Phosphatidylser...	Rattus norvegicus
XP_001091545	1.8e-211	97.3	phosphatidylser...	Macaca mulatta
Q00576	2.1e-211	98.1	Phosphatidylser...	Cricetulus griseus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR004277 110 388 PF03034 Phosphatidyl serine synthase

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR004277	110	388	PF03034	Phosphatidyl serine synthase

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 54 75 PHTITLLSFTIISLMYFAFTRD

83 104 IWRGILSVIFFFLIISVLAFPN

115 137 WRMVFGLSVLYFLFLVFLLFLNF

188 210 WGWAMKALLIRSYGLCWTISITW

224 246 FAECWWDQVILDILLCNGGGIWL

299 321 QRVAGIYLFMIIWQVTELNTFFL

332 353 PLSWGRILFIGCITAPTVRQYY

365 387 GTQCWVFGVIGFLEAIVCIKFGQ

395 417 ILYVMLWLLCVAFTTFLCLYGMV

Method	From	To	amino acid sequence
SOSUI	54	75	PHTITLLSFTIISLMYFAFTRD
83	104	IWRGILSVIFFFLIISVLAFPN
115	137	WRMVFGLSVLYFLFLVFLLFLNF
188	210	WGWAMKALLIRSYGLCWTISITW
224	246	FAECWWDQVILDILLCNGGGIWL
299	321	QRVAGIYLFMIIWQVTELNTFFL
332	353	PLSWGRILFIGCITAPTVRQYY
365	387	GTQCWVFGVIGFLEAIVCIKFGQ
395	417	ILYVMLWLLCVAFTTFLCLYGMV

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	YES

Length of 3'UTR	3249 bp
Genome contig ID	gi65535943f_63435288
PolyA signal sequence (ATTAAA,-12)	+--------+--------+----*----+---- TTGTTTTAAATATATCAGTTCACATTAAACAGCTC
Flanking genome sequence (165137 - 165186)	----+--------+--------+--------+--------+----* ATCAATGATCTGTCTTTGTTAGAATGATGTTTCTTTGTATCTTATTAGTC

Gene/Protein Characteristic Table for mKIAA0024

Features of the cloned DNA sequence

Features of the protein sequence