ROUGE

Gene/Protein Characteristic Table for mFLJ00383

Link to : NEDO \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK220247
Description :	Vacuolar ATP synthase subunit S1 precursor.
Clone Name :	mid21056 [Vector Info]
Source :	Mouse adult pancreatic islet

Features of the cloned DNA sequence	Description

Length: 2149 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 684 bp

Genome contig ID gi66880665f_68857762
PolyA signal sequence
(AATAAA,-20)
+----*----+----*----+----*----+----
TTTCCTTCCTAATAAAATAAAGACGTGTTGCCTTG
Flanking genome sequence
(107586 - 107635)
----+----*----+----*----+----*----+----*----+----*
TGTTGGGCTTCGTGTCACTCATTTCTGCACTGAACAGTAGATTTTTTTTT

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

FLJ00383 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
FLJ00383	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 2..1465
Length: 487 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAD90172	6.1e-205	100.0	mFLJ00383 prote...	Mus musculus
Q9R1Q9	1.5e-193	100.0	V-type proton A...	Mus musculus
BAE36502	3.8e-193	99.8	unnamed protein...	Mus musculus
BAE29475	6e-193	99.8	unnamed protein...	Mus musculus
BAE40053	6e-193	99.6	unnamed protein...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR008388 50 487 PF05827 Vacuolar ATP synthase subunit S1

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR008388	50	487	PF05827	Vacuolar ATP synthase subunit S1

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 41 60 APVMWLSLSLVAVAAAVATE

443 465 IWMGLLTTLFMLFIFTYGLHMIL

Method	From	To	amino acid sequence
SOSUI	41	60	APVMWLSLSLVAVAAAVATE
443	465	IWMGLLTTLFMLFIFTYGLHMIL

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	684 bp
Genome contig ID	gi66880665f_68857762
PolyA signal sequence (AATAAA,-20)	+--------+--------+----*----+---- TTTCCTTCCTAATAAAATAAAGACGTGTTGCCTTG
Flanking genome sequence (107586 - 107635)	----+--------+--------+--------+--------+----* TGTTGGGCTTCGTGTCACTCATTTCTGCACTGAACAGTAGATTTTTTTTT

Gene/Protein Characteristic Table for mFLJ00383

Features of the cloned DNA sequence

Features of the protein sequence