Miyakogusa Predicted Gene

chr1.CM0122.710.nd
Related links:
Predicted Sequence Links:
Genome Sequence: CM0122
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7Q0Q5_VITVI 577 61.6 74.0 (tr|A7Q0Q5) Chromosome chr7 scaffold_42, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00028140001 PE=4 SV=1
TAIR_pep AT3G62330.1 405 51.4 62.4 | Symbols: | zinc knuckle (CCHC-type) family protein | chr3:23074304-23076394 REVERSE
Medicago IMGA|AC135465_36.4 318 66.7 72.0 Zinc finger, CCHC-type chr07_pseudomolecule_IMGAG_V2 29422498-29420170 E EGN_Mt071002 20080227
Soybean Glyma03g37960.1 705 76.9 81.6  
3' Unigene AV772209 720 95.2 95.2 MPD032f12_f
A list of protein families, domains and functional sites (searches in InterPro)
chr1.CM0122.710.nd length: 462 aa.
IPR001878 Zinc finger, CCHC-type
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
FPrintScan PR00939 C2HCZNFINGER 16 89-98
98-106
ProfileScan PS50158 ZF_CCHC 8.862 91-106
no_ID  
Coil coil coiled-coil NA 319-340
Seg seg seg NA 185-201
217-228
230-241
253-266
superfamily SSF57756 Retrovirus 2.2e-05 87-117
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr1.CM0122.710.nd 462 0.161 0.097 0.071 0.899 _ 2
Wolf-PSORT
chr1.CM0122.710.nd	nucl 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr1.CM0122.710.nd Twilight zone -2.921 -0.008 -0.382 1.13% -2.530