Miyakogusa Predicted Gene

chr1.CM0122.710.nd

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr1.CM0122.710.nd - phase: 0 
         (462 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G62330.1 | Symbols:  | zinc knuckle (CCHC-type) family protei...   405   e-113
AT5G22040.2 | Symbols:  | similar to zinc knuckle (CCHC-type) fa...    48   1e-05
AT5G22040.1 | Symbols:  | similar to zinc knuckle (CCHC-type) fa...    48   1e-05

>AT3G62330.1 | Symbols:  | zinc knuckle (CCHC-type) family protein |
           chr3:23074304-23076394 REVERSE
          Length = 479

 Score =  405 bits (1042), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 246/479 (51%), Positives = 299/479 (62%), Gaps = 20/479 (4%)

Query: 2   ANRPDPDNDDDFLELYKEYTGPLGSTAATNTQEGAKSNKRSNAGSDEEDEPR--DPNAVP 59
           + R DP+ DDDF E+YKEYTGP  +    N Q+  K  K+ +    +E+E +  DPN+VP
Sbjct: 3   STRSDPELDDDFSEIYKEYTGPASAVTNNNIQDKDKPVKQRSEERCDEEEEQLPDPNSVP 62

Query: 60  TDFTSREAKVWEAKSKATERNWKKRKEEEMICKLCGESGHFTQGCPSTLGANRKSQDFFE 119
           TDFTSREAKVWEAKSKATERNWKKRKEEEMICK+CGESGHFTQGCPSTLGANRKSQ+FFE
Sbjct: 63  TDFTSREAKVWEAKSKATERNWKKRKEEEMICKICGESGHFTQGCPSTLGANRKSQEFFE 122

Query: 120 RIPARDKNVRALFTEKVISKIERDTGCKIKMDEKFIIVSGKDRLIFSKGVDAVHKVREEG 179
           R+PARD NVR LFTEKV+  IER+T CKIK+DEKFIIVSGKDRLI  KGVDAVHKV+E+G
Sbjct: 123 RVPARDNNVRVLFTEKVMESIERETSCKIKLDEKFIIVSGKDRLILRKGVDAVHKVKEDG 182

Query: 180 DQKGTXXXXXXXXXXXXXXXXX-ARFNRSEPQR-------SHSGPXXXXXXXXXXXXPXX 231
           + K +                  +R   SEPQR       S S P               
Sbjct: 183 EMKSSSVSHRSRSRSPRRTSVGPSRARNSEPQRQQLPSHGSSSFPERSGRQDKFVDN-RF 241

Query: 232 XXXXXXXXXXQKFARGSPQAYXXXXXXXXXXXXXXPRQAPYPGNSYNSFDGRNENMGTYR 291
                     +   RGSPQAY              P +  Y G     +D +   +  YR
Sbjct: 242 REETRVRENQRNVPRGSPQAYGSDRARSRSTHSKSPGRPRYSGWD-KPYDRQKPEVSGYR 300

Query: 292 NDGWDSHRR--ESGFQPGHQLDYSASPQTLEELELEYKNEAVELMKSRDREEDEENFKHR 349
           ++ WD  R    S  Q  HQ +    PQTLEELELEY  +A+EL K RD+EEDEEN KHR
Sbjct: 301 SERWDQERMGGSSDIQVSHQFERPPFPQTLEELELEYTRDALELEKKRDKEEDEENNKHR 360

Query: 350 EAIRDLREKYMSKVALLRATHAKKWDEFLQLDARRCQQQAIQHMPPSGYRGYKQ-QNFSE 408
           E IR+LRE YM K+A LR  +AK+WD+FLQLDA+R QQQA Q      Y  Y+Q   ++E
Sbjct: 361 ETIRELRESYMKKLAGLRGMNAKQWDDFLQLDAQRRQQQARQQNSGLSYGNYRQFPPYAE 420

Query: 409 Y-DGSTAN-PPYAGTNFPMEPKNRFSDTMETYPTRSHD-NFGEF--QRRGDFAKAYNRY 462
           + DG ++N PPY G N PM+ K R+ +  + Y +R  D N+G F  QRR ++ KAYNRY
Sbjct: 421 FDDGYSSNPPPYGGNNMPMDSKGRYPNHGDNYSSRHQDNNYGGFQRQRREEYGKAYNRY 479


>AT5G22040.2 | Symbols:  | similar to zinc knuckle (CCHC-type)
           family protein [Arabidopsis thaliana]
           (TAIR:AT3G62330.1); similar to unnamed protein product
           [Vitis vinifera] (GB:CAO67423.1) | chr5:7297157-7298366
           REVERSE
          Length = 284

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 6/90 (6%)

Query: 305 QPGHQ------LDYSASPQTLEELELEYKNEAVELMKSRDREEDEENFKHREAIRDLREK 358
           QP HQ       D +   QT E LE ++ ++   L K +   ED E  +HRE I  +  +
Sbjct: 104 QPQHQENPKTGYDNNRGVQTFEGLEQKFMDDITRLAKDQIEAEDAEIARHREKINTINAR 163

Query: 359 YMSKVALLRATHAKKWDEFLQLDARRCQQQ 388
           Y  ++A LRA H  K +E ++ ++   QQQ
Sbjct: 164 YEEQLATLRARHTGKREEIMRKESLARQQQ 193


>AT5G22040.1 | Symbols:  | similar to zinc knuckle (CCHC-type)
           family protein [Arabidopsis thaliana]
           (TAIR:AT3G62330.1); similar to unnamed protein product
           [Vitis vinifera] (GB:CAO67423.1) | chr5:7297157-7298366
           REVERSE
          Length = 284

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 6/90 (6%)

Query: 305 QPGHQ------LDYSASPQTLEELELEYKNEAVELMKSRDREEDEENFKHREAIRDLREK 358
           QP HQ       D +   QT E LE ++ ++   L K +   ED E  +HRE I  +  +
Sbjct: 104 QPQHQENPKTGYDNNRGVQTFEGLEQKFMDDITRLAKDQIEAEDAEIARHREKINTINAR 163

Query: 359 YMSKVALLRATHAKKWDEFLQLDARRCQQQ 388
           Y  ++A LRA H  K +E ++ ++   QQQ
Sbjct: 164 YEEQLATLRARHTGKREEIMRKESLARQQQ 193