Miyakogusa Predicted Gene

chr1.CM0033.700.nc

Related links:

GeneModel
GBrowse(chr1.CM0033.700.nc)

Predicted Sequence Links:

Genome Sequence: CM0033

Full length sequence(787613 bp)
Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	Q2HV44_MEDTR	520	88.9	93.4	(tr\|Q2HV44) Major intrinsic protein OS=Medicago truncatula GN=MtrDRAFT_AC148995g21v2 PE=3 SV=1
TAIR_pep	AT2G37170.1	472	81.3	86.2	\| Symbols: PIP2;2, PIP2B \| PIP2B (plasma membrane intrinsic protein 2;2); water channel \| chr2:15620703-15621870 REVERSE
Medicago	IMGA\|AC148995_21.5	520	88.9	93.4	Major intrinsic protein chr07_pseudomolecule_IMGAG_V2 25546630-25545043 F EGN_Mt071002 20080227
Soybean	Glyma19g36530.1	496	84.8	89.6
Lotus Consensus	KMC004544A_C02	1711	99.9	99.9	KMC004544A_c02
3' Unigene	KMC004544A_C02	706	100.0	100.0	KMC004544A_c02
5' Unigene	R_KMC000311A_C02	787	100.0	100.0	R_KMC000311A_c02

A list of protein families, domains and functional sites (searches in InterPro)

IPR000425	Major intrinsic protein
chr1.CM0033.700.nc				length: 289 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005215	transporter activity
Biological Process	GO:0006810	transport
Cellular Component	GO:0016020	membrane
BlastProDom	PD000295	Q84XC6_EEEEE_Q84XC6;	1e-115	39-264
FPrintScan	PR00783	MINTRINSICP	5e-74	41-60 89-113 126-145 175-193 211-233 251-271
HMMPanther	PTHR19139	AQUAPORIN	4.5e-192	4-256
HMMPfam	PF00230	MIP	7.4e-133	33-268
ScanRegExp	PS00221	MIP	8e-5	107-115
superfamily	SSF81338	Aquaporin-like	1.2e-66	30-285
IPR012269	Aquaporin
Molecular Function	GO:0005215	transporter activity
Biological Process	GO:0006810	transport
Cellular Component	GO:0016021	integral to membrane
HMMPIR	PIRSF002276	Aquaporin	5e-87	40-286
HMMTigr	TIGR00861	MIP:	6e-87	45-268
no_ID
Gene3D	1.20.1080.10	no description	7.2e-64	30-288
HMMPanther	PTHR19139:SF27	AQUAPORIN-RELATED	4.5e-192	4-256

Putative transmembrane regions

	From	To
TM segments SOSUI	41	63
	79	101
	122	144
	170	192
	251	273

TargetP V1.0 Prediction Results

Name	Length	cTP	mTP	SP	other	Loc.	RC
chr1.CM0033.700.nc	289	0.025	0.060	0.222	0.964	_	2

Wolf-PSORT

chr1.CM0033.700.nc	plas 13

PTS1 (Peroxisome targeting signal type 1)

entry_id	prediction	score	sppta	spptna	fp	profile
chr1.CM0033.700.nc	Twilight zone	-1.050	-0.165	-0.235	0.78%	-0.650