Miyakogusa Predicted Gene

chr1.CM0029.50.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0029
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A9PF97_POPTR 691 77.6 84.9 (tr|A9PF97) Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
TAIR_pep AT3G58560.1 625 71.4 81.7 | Symbols: | endonuclease/exonuclease/phosphatase family protein | chr3:21661857-21664873 REVERSE
Medicago IMGA|AC145449_37.4 78.2 35.8 50.9 Endonuclease/exonuclease/phosphatase chr04_pseudomolecule_IMGAG_V2 37302544-37297750 H EGN_Mt071002 20080227
Soybean Glyma03g36550.2 726 82.7 87.9  
3' Unigene BP063723 537 92.8 92.8 GENLf026f10
5' Unigene AV407352 555 100.0 100.0 MWL021g03_r
A list of protein families, domains and functional sites (searches in InterPro)
chr1.CM0029.50.nc length: 459 aa.
IPR005135 Endonuclease/exonuclease/phosphatase
method AccNumber shortName E-value location
HMMPfam PF03372 Exo_endo_phos 8.4e-13 250-396
no_ID  
HMMPanther PTHR12121 CARBON 5.2e-78 238-367
384-417
HMMPanther PTHR12121:SF13 CARBON 5.2e-78 238-367
384-417
Seg seg seg NA 116-132
134-155
superfamily SSF56219 DNase 2.9e-14 235-363
Putative transmembrane regions
  From To
TM segments
SOSUI		 3 25
412 434
438 459
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr1.CM0029.50.nc 459 0.033 0.112 0.227 0.796 _ 3
Wolf-PSORT
chr1.CM0029.50.nc	cyto 5, chlo 2, E.R. 2, nucl 1, mito 1, plas 1, vacu 1, cysk 1, cysk_nucl 1, nucl_plas 1, cysk_plas 1, mito_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr1.CM0029.50.nc Twilight zone -3.736 -10.950 -2.473 1.31% 9.687