Miyakogusa Predicted Gene

chr1.CM0029.50.nc
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr1.CM0029.50.nc + phase: 0 
         (459 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC145449_37.4 Endonuclease/exonuclease/phosphatase chr04_ps...    78   7e-15
IMGA|AC144617_22.5 Endonuclease/exonuclease/phosphatase chr01_ps...    70   1e-12

>IMGA|AC145449_37.4 Endonuclease/exonuclease/phosphatase
           chr04_pseudomolecule_IMGAG_V2 37302544-37297750 H
           EGN_Mt071002 20080227
          Length = 403

 Score = 78.2 bits (191), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 81/159 (50%), Gaps = 32/159 (20%)

Query: 241 DGRVSSSGTFTVLSYNILSDSYAS--SDLYNYCPSWALSWPYRRQNLLREIVGYRADIIC 298
           D  ++S   FTV SYNIL+D  AS  +DLY   PS  ++W  R++ L  E+  +  DIIC
Sbjct: 47  DQSLASPERFTVASYNILADRNASQHTDLYVNVPSRYINWNRRQKILSEELFEWNPDIIC 106

Query: 299 LQEVQNDHYEEFFAPELDKHGYNGLYKRKTNEVFNGNINTIDGCATFFRRDRFSHVKKYE 358
           LQEV  D Y E  +  L K GY G YKR+T +       T DGCA F++ D+F  +    
Sbjct: 107 LQEV--DMYVE-LSNILVKAGYAGSYKRRTGD-------TSDGCAMFWKADKFRLLDGES 156

Query: 359 VEFNKAAQSLTDAMIPTTQKKSALNRLVKDNVALIVVLE 397
           +++                     N  ++DNVA ++V E
Sbjct: 157 IQYK--------------------NIGLRDNVAQLLVFE 175


>IMGA|AC144617_22.5 Endonuclease/exonuclease/phosphatase
           chr01_pseudomolecule_IMGAG_V2 3434673-3444796 E
           EGN_Mt071002 20080227
          Length = 864

 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 59/101 (58%), Gaps = 13/101 (12%)

Query: 250 FTVLSYNILSDSYASS---DLYNYCPSWALSWPYRRQNLLREIVGYRADIICLQEVQNDH 306
           F VLSYNIL+D  A      LY + PS+ L+W +R+  ++ E+  + ADI+CLQEV  D 
Sbjct: 175 FKVLSYNILADYLAMDHWRKLYYHIPSYMLNWQWRKSKIVLELGLWSADIMCLQEV--DR 232

Query: 307 YEEFFAPELDKHGYNGLYKRKTNEVFNGNINTIDGCATFFR 347
           + E    +L   GY G++K +T        N +DGCA F+R
Sbjct: 233 FHE-LEEDLKFKGYRGIWKMRTG-------NPVDGCAIFWR 265