Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005486A_C01 KMC005486A_c01
(616 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC06183.1| 110kDa protein HMP [Pisum sativum] 95 8e-19
dbj|BAC06184.1| 110 kDa 4SNc-Tudor domain protein [Pisum sativum] 95 8e-19
ref|NP_200986.1| 100 kDa coactivator - like protein; protein id:... 92 7e-18
ref|NP_196352.2| putative protein; protein id: At5g07350.1, supp... 89 3e-17
pir||T49874 hypothetical protein T2I1.60 - Arabidopsis thaliana ... 89 3e-17
>dbj|BAC06183.1| 110kDa protein HMP [Pisum sativum]
Length = 381
Score = 94.7 bits (234), Expect = 8e-19
Identities = 46/67 (68%), Positives = 56/67 (82%), Gaps = 1/67 (1%)
Frame = +3
Query: 417 MASAATGATGWYRGRVKAVPSGDCLVIVAVASS-KPGPLPEKSITLASLITPRLARRGGV 593
MA+ A G + WY+ +VKAV SGDC+V+V+VA++ K G LPEKSITL+SLI PRLARRGGV
Sbjct: 1 MATTAAGNSAWYKAKVKAVTSGDCVVVVSVAANAKSGVLPEKSITLSSLIAPRLARRGGV 60
Query: 594 DEPFAWE 614
DE FAWE
Sbjct: 61 DEAFAWE 67
>dbj|BAC06184.1| 110 kDa 4SNc-Tudor domain protein [Pisum sativum]
Length = 989
Score = 94.7 bits (234), Expect = 8e-19
Identities = 46/67 (68%), Positives = 56/67 (82%), Gaps = 1/67 (1%)
Frame = +3
Query: 417 MASAATGATGWYRGRVKAVPSGDCLVIVAVASS-KPGPLPEKSITLASLITPRLARRGGV 593
MA+ A G + WY+ +VKAV SGDC+V+V+VA++ K G LPEKSITL+SLI PRLARRGGV
Sbjct: 1 MATTAAGNSAWYKAKVKAVTSGDCVVVVSVAANAKSGVLPEKSITLSSLIAPRLARRGGV 60
Query: 594 DEPFAWE 614
DE FAWE
Sbjct: 61 DEAFAWE 67
>ref|NP_200986.1| 100 kDa coactivator - like protein; protein id: At5g61780.1
[Arabidopsis thaliana] gi|10176871|dbj|BAB10078.1|
transcription factor-like protein [Arabidopsis thaliana]
gi|25083258|gb|AAN72055.1| 100 kDa coactivator - like
protein [Arabidopsis thaliana]
Length = 985
Score = 91.7 bits (226), Expect = 7e-18
Identities = 41/66 (62%), Positives = 52/66 (78%)
Frame = +3
Query: 417 MASAATGATGWYRGRVKAVPSGDCLVIVAVASSKPGPLPEKSITLASLITPRLARRGGVD 596
MA+ A W +GRVKAV SGDCLVI A+ ++ GP PEK+ITL+SL+ P++ARRGG+D
Sbjct: 1 MATGAATENQWLKGRVKAVTSGDCLVITALTHNRAGPPPEKTITLSSLMAPKMARRGGID 60
Query: 597 EPFAWE 614
EPFAWE
Sbjct: 61 EPFAWE 66
Score = 34.7 bits (78), Expect = 1.0
Identities = 19/57 (33%), Positives = 32/57 (55%), Gaps = 2/57 (3%)
Frame = +3
Query: 450 YRGRVKAVPSGDCLVIVAVASSKPGPLPEKSITLASLITPRLA--RRGGVDEPFAWE 614
+ G+V V SGDCLV+ + P+ E+ + L+S+ +P++ RR P+A E
Sbjct: 384 FTGKVVEVVSGDCLVVADDSIPFGSPMAERRVCLSSIRSPKMGNPRREEKPAPYARE 440
>ref|NP_196352.2| putative protein; protein id: At5g07350.1, supported by cDNA:
gi_18086331 [Arabidopsis thaliana]
gi|18086332|gb|AAL57629.1| AT5g07350/T2I1_60
[Arabidopsis thaliana]
Length = 991
Score = 89.4 bits (220), Expect = 3e-17
Identities = 41/63 (65%), Positives = 52/63 (82%), Gaps = 1/63 (1%)
Frame = +3
Query: 429 ATGATG-WYRGRVKAVPSGDCLVIVAVASSKPGPLPEKSITLASLITPRLARRGGVDEPF 605
ATGA W +GRVKAV SGDCLVI A++ ++ GP PEK+IT +SL+ P++ARRGG+DEPF
Sbjct: 2 ATGAENQWLKGRVKAVTSGDCLVITALSHNRAGPPPEKTITFSSLMAPKMARRGGIDEPF 61
Query: 606 AWE 614
AWE
Sbjct: 62 AWE 64
Score = 34.3 bits (77), Expect = 1.3
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 450 YRGRVKAVPSGDCLVIVAVASSKPGPLPEKSITLASLITPRLA--RRGGVDEPFAWE 614
+ G+V V SGDCL++ A P E+ + L+S+ +P++ RR P+A E
Sbjct: 380 FTGKVVEVVSGDCLIVADDAVPFGSPAAERRVCLSSIRSPKMGNPRREEKPAPYARE 436
>pir||T49874 hypothetical protein T2I1.60 - Arabidopsis thaliana
gi|7576173|emb|CAB87924.1| putative protein [Arabidopsis
thaliana]
Length = 1051
Score = 89.4 bits (220), Expect = 3e-17
Identities = 41/63 (65%), Positives = 52/63 (82%), Gaps = 1/63 (1%)
Frame = +3
Query: 429 ATGATG-WYRGRVKAVPSGDCLVIVAVASSKPGPLPEKSITLASLITPRLARRGGVDEPF 605
ATGA W +GRVKAV SGDCLVI A++ ++ GP PEK+IT +SL+ P++ARRGG+DEPF
Sbjct: 2 ATGAENQWLKGRVKAVTSGDCLVITALSHNRAGPPPEKTITFSSLMAPKMARRGGIDEPF 61
Query: 606 AWE 614
AWE
Sbjct: 62 AWE 64
Score = 34.3 bits (77), Expect = 1.3
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 450 YRGRVKAVPSGDCLVIVAVASSKPGPLPEKSITLASLITPRLA--RRGGVDEPFAWE 614
+ G+V V SGDCL++ A P E+ + L+S+ +P++ RR P+A E
Sbjct: 380 FTGKVVEVVSGDCLIVADDAVPFGSPAAERRVCLSSIRSPKMGNPRREEKPAPYARE 436
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 574,842,497
Number of Sequences: 1393205
Number of extensions: 13237780
Number of successful extensions: 40566
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 38010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40473
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
