Miyakogusa Predicted Gene
- chr1.CM0094.310.nc
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr1.CM0094.310.nc + phase: 0
(2973 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC000508A_C01 KMC000508A_c01 886 0.0
KMC000542A_C01 KMC000542A_c01 412 e-115
KMC005486A_C01 KMC005486A_c01 357 4e-98
>KMC000508A_C01 KMC000508A_c01
Length = 859
Score = 886 bits (447), Expect = 0.0
Identities = 612/665 (92%), Gaps = 4/665 (0%)
Strand = Plus / Minus
Query: 2310 gaaggaagctcctgtgcttggtgcatttagtccgaagaagggtgacatagtcctttgtta 2369
||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||
Sbjct: 859 gaaggaagctcctgtgcttggtgcatttagtcctaagaagggtgacacagtcccttgtta 800
Query: 2370 ttttcatgctgataagtcctggtaccgggcaatggttgtcaatacacctcgaggaccagt 2429
|||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 799 ttttcatggcgataagtcctggtaccgggccatggttgtgaatacacctcgaggaccagg 740
Query: 2430 tgaatctcctgaggacatatttgaagtattctacattgactatggaaatcaagaacaagt 2489
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tgaatctcctcaggacatatatgaagtattctacattgactatggaaatcaagaacaagt 680
Query: 2490 agcttacagtcagttacgccctcttgatccgtccgtgtctgctgcacctggtcttgctca 2549
|||||||||||| ||||| |||||||||| |||||||||||| ||||| |||||||||||
Sbjct: 679 agcttacagtcacttacgacctcttgatcagtccgtgtctgccgcacccggtcttgctca 620
Query: 2550 attgtgcagtctagcatacattaagagtccaaacgtggaagaggatttcggccaagaagc 2609
|||||||||||| ||||||||||| ||||||| | |||||||||||||||||| |||| |
Sbjct: 619 attgtgcagtctcgcatacattaaaagtccaagcttggaagaggatttcggcccagaacc 560
Query: 2610 tgccgagtatttgtgtgagctcact-ttaaacagtgggaaagagttcagagcccaggttg 2668
|| || |||||| |||| |||||| |||| |||||| ||||||||||||||||||||||
Sbjct: 559 agctgaatatttgagtgaactcactcttaagcagtggaaaagagttcagagcccaggttg 500
Query: 2669 aggagagagatacttccggaggaaaattgaaagggcagggaactgggacaattcttgcag 2728
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 499 aggagagagatacttctggaggaaaagcaaaagggcagggaactgggacaattcttgctg 440
Query: 2729 taactcttgtcgctgtggatgctgagatcagcgttaacgctgccatgctacaggaaggac 2788
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 439 taactcttgttgctgtggatgctgagatcagcgttaacgcagccatgctacaggaaggac 380
Query: 2789 ttgccaggatggaaaaaaggaaccggtgggacagaaaagaaagaaaggtgggtcttgata 2848
| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 379 tagccaggatggaaaaaaggaatcggtgggacagaaaagaaagaaaggcgggtcttgata 320
Query: 2849 gtctggaaaaattccaggacgatgcacgcaaggaacggcgtggaatgtggcagtatggag 2908
|||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||
Sbjct: 319 gtctggaaaaattccaggacgaggcacgcaccaaacggcgtgggatgtggcagtatggag 260
Query: 2909 atgtcgagtcagatgatgaggacaatgctcctccggcgagaaaagccggtgctggccgca 2968
|||| ||||||||||| |||||| | |||||||||||||||||| ||| |||||||||
Sbjct: 259 atgttgagtcagatgaggaggac---ggtcctccggcgagaaaagctggtactggccgca 203
Query: 2969 gatga 2973
||||
Sbjct: 202 aatga 198
>KMC000542A_C01 KMC000542A_c01
Length = 565
Score = 412 bits (208), Expect = e-115
Identities = 214/216 (99%)
Strand = Plus / Minus
Query: 2752 gagatcagcgttaacgctgccatgctacaggaaggacttgccaggatggaaaaaaggaac 2811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gagatcagcgttaacgctgccatgctacaggaaggacttgccaggatggaaaaaaggaac 506
Query: 2812 cggtgggacagaaaagaaagaaaggtgggtcttgatagtctggaaaaattccaggacgat 2871
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 505 cggtgggacagaaaagaaagaaaggtgggtcttgatagtctgcaaaaattccaggacgat 446
Query: 2872 gcacgcaaggaacggcgtggaatgtggcagtatggagatgtcgagtcagatgatgaggac 2931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcacgcaaggaacggcgtggaatgtggcagtatggagatgtcgagtcagatgatgaggac 386
Query: 2932 aatgctcctccggcgagaaaagccggtgctggccgc 2967
| ||||||||||||||||||||||||||||||||||
Sbjct: 385 actgctcctccggcgagaaaagccggtgctggccgc 350
>KMC005486A_C01 KMC005486A_c01
Length = 616
Score = 357 bits (180), Expect = 4e-98
Identities = 195/200 (97%)
Strand = Plus / Plus
Query: 1 atggcatcggctgcgactggagctacaggatggtacaggggaagggtgaaggcggttcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 atggcatcggctgcgactggagctacaggatggtacaggggaagggtgaaggcggttcct 476
Query: 61 tcaggggattgcttggtcattgtggccgttgctagctccaagcctggtcctctgcctgag 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tcaggggattgcttggtcattgtggccgttgctagctccaagcctggtcctctgcctgaa 536
Query: 121 aaatcaatcactctgtcttctcttattgctcctcggctggcgcggagaggcggtgtggat 180
||||||||||||||| ||||||||||| ||||| | ||||||||||||||||||||||||
Sbjct: 537 aaatcaatcactctggcttctcttattactcctagactggcgcggagaggcggtgtggat 596
Query: 181 gaaccatttgcatgggaaag 200
||||||||||||||||||||
Sbjct: 597 gaaccatttgcatgggaaag 616
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,007
Number of Sequences: 8469
Number of extensions: 10007
Number of successful extensions: 2694
Number of sequences better than 1.0e-03: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2687
Number of HSP's gapped (non-prelim): 5
length of query: 2973
length of database: 5,164,774
effective HSP length: 17
effective length of query: 2956
effective length of database: 5,020,801
effective search space: 14841487756
effective search space used: 14841487756
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)