Miyakogusa Predicted Gene
- chr1.CM0029.320.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr1.CM0029.320.nd - phase: 1 /partial
(1124 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC000477A_C01 KMC000477A_c01 718 0.0
KMC006439A_C01 KMC006439A_c01 113 4e-25
>KMC000477A_C01 KMC000477A_c01
Length = 592
Score = 718 bits (362), Expect = 0.0
Identities = 376/378 (99%), Gaps = 2/378 (0%)
Strand = Plus / Minus
Query: 749 cgaaagagctgcagaggcaaggattggtggtggtggattggatctgcctccaaggcggag 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 cgaaagagctgcagaggcaaggattggtggtggtggattggatctgcctccaaggcggag 533
Query: 809 agatggccaggactatgctgctgctgcagctggtggaggtggtggagcaggtggaaggtg 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 agatggccaggactatgctgctgctgcagctggtggaggtggtggagcaggtggaaggtg 473
Query: 869 gcaagatttgtccctttctcagcctaggcaaggcagtgggcgtgcaggttatggtagtgg 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gcaagatttgtccctttctcagcctaggcaaggcagtgggcgtgcaggttatggtagtgg 413
Query: 929 tggtggaaggccatttgcattcaatcaggcagcaggtggctattcaagggatcgaacggg 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tggtggaaggccatttgcattcaatcaggcagcaggtggctattcaagggatcgaacggg 353
Query: 989 acgaggaggcggtggtgggggtggttatcagagtcaatatggaggttcagggagggctca 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 acgaggaggcggtggtgggggtggttatcagagtcaatatggaggttcagggagggctca 293
Query: 1049 tcagggaggttcagcattg-aggggacaccatggcgatggatcttctcgcatgg-ttagc 1106
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 292 tcagggaggttcagcattgcaggggacaccatggcgatggatcttctcgcatggcttagc 233
Query: 1107 ctcaagggagctcgtgct 1124
||||||||||||||||||
Sbjct: 232 ctcaagggagctcgtgct 215
>KMC006439A_C01 KMC006439A_c01
Length = 552
Score = 113 bits (57), Expect = 4e-25
Identities = 84/93 (90%)
Strand = Plus / Minus
Query: 1032 ggttcagggagggctcatcagggaggttcagcattgaggggacaccatggcgatggatct 1091
|||||||||||||||||||| || |||||| |||||||||| ||||| ||||||| ||||
Sbjct: 390 ggttcagggagggctcatcatgggggttcaacattgagggggcaccagggcgatgtatct 331
Query: 1092 tctcgcatggttagcctcaagggagctcgtgct 1124
|||||||||||||||| ||||||| |||||||
Sbjct: 330 actcgcatggttagccttaagggagttcgtgct 298
Score = 111 bits (56), Expect = 2e-24
Identities = 107/124 (86%), Gaps = 3/124 (2%)
Strand = Plus / Minus
Query: 871 aagatttgtccctttctcagcctaggcaaggcagtgggcgtgcaggttatggtagtggtg 930
|||||||||||||||||||||| || ||||| |||| || |||| |||||||||||||
Sbjct: 552 aagatttgtccctttctcagccaagncaaggtggtggacgcacaggatatggtagtggtg 493
Query: 931 gtggaaggccatttgcattcaatcaggcagcag---gtggctattcaagggatcgaacgg 987
||||||| ||| | ||||||| ||||||||| | |||||||||| |||||||||||||
Sbjct: 492 gtggaagnccaatggcattcagtcaggcagctggtagtggctattctagggatcgaacgg 433
Query: 988 gacg 991
||||
Sbjct: 432 gacg 429
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4089
Number of Sequences: 8469
Number of extensions: 4089
Number of successful extensions: 1296
Number of sequences better than 1.0e-03: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1290
Number of HSP's gapped (non-prelim): 3
length of query: 1124
length of database: 5,164,774
effective HSP length: 16
effective length of query: 1108
effective length of database: 5,029,270
effective search space: 5572431160
effective search space used: 5572431160
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)