Miyakogusa Predicted Gene
- chr2.CM0031.300.nc
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr2.CM0031.300.nc + phase: 0
(2784 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC001433A_C01 KMC001433A_c01 1176 0.0
KMC000339A_C04 KMC000339A_c04 690 0.0
KMC013845A_C01 KMC013845A_c01 123 1e-27
KMC000037A_C01 KMC000037A_c01 113 1e-24
KMC013416A_C01 KMC013416A_c01 54 8e-07
KMC004888A_C01 KMC004888A_c01 46 2e-04
>KMC001433A_C01 KMC001433A_c01
Length = 636
Score = 1176 bits (593), Expect = 0.0
Identities = 596/597 (99%)
Strand = Plus / Plus
Query: 1 atggatccaaatgaacatgaaaatggaaatgggaatgggaatgggaatgaggatttgatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40 atggatccaaatgaacatgaaaatggaaatgggaatgggaatgggaatgaggatttgatg 99
Query: 61 cctccgccaccaccaccccccattgtcccagctgatgtggaaccggtcaaggttgacctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 cctccgccaccaccaccccccattgtcccagctgatgtggaaccggtcaaggttgacctc 159
Query: 121 cttgacctaccccctgagccggtgaagaaaaaactacctacccggcttcccattgccagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 160 cttgacctaccccctgagccggtgaagaaaaaactacctacccggcttcccatagccagg 219
Query: 181 aaaggtttgggttccaaagggaccaagctgccccttctcacaaatcactttaaagtaact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 aaaggtttgggttccaaagggaccaagctgccccttctcacaaatcactttaaagtaact 279
Query: 241 gttgctaacagtgatggacatttcttccagtacagtgtggctctttcttacgaggatggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gttgctaacagtgatggacatttcttccagtacagtgtggctctttcttacgaggatggg 339
Query: 301 cgccctgtagaaggaaagggggttgggcgaaaagtgattgacaaggtgcaggagacatat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 cgccctgtagaaggaaagggggttgggcgaaaagtgattgacaaggtgcaggagacatat 399
Query: 361 ggttctgagttgaatgggaaagactttgcctatgatggggagaagactttgtttaccatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ggttctgagttgaatgggaaagactttgcctatgatggggagaagactttgtttaccatt 459
Query: 421 ggttctcttgctcggaacaagcttgagtttacagttgttctagaggatgttatatctaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ggttctcttgctcggaacaagcttgagtttacagttgttctagaggatgttatatctaac 519
Query: 481 agaaacaatggaaactgcagccctgatggtgctagtacaaatgatagtgacaagaagaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 agaaacaatggaaactgcagccctgatggtgctagtacaaatgatagtgacaagaagaga 579
Query: 541 atgagacggccttatcattccaaaactttcaaagttgagattagttttgctgcgaag 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 atgagacggccttatcattccaaaactttcaaagttgagattagttttgctgcgaag 636
>KMC000339A_C04 KMC000339A_c04
Length = 668
Score = 690 bits (348), Expect = 0.0
Identities = 371/376 (98%), Gaps = 2/376 (0%)
Strand = Plus / Minus
Query: 2411 ttattgataataaaatttgtcatcctcgaaataatgacttctatatgtgcgcacatgctg 2470
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ttattgataataaaattgtccatcctcgaaataatgacttctatatgtgcgcacatgctg 609
Query: 2471 gaatgattggtacaagcagacccactcactaccatgttctgcttgatgatattggttttt 2530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gaatgattggtacaagcagacccactcactaccatgttctgcttgatgatattggttttt 549
Query: 2531 ctcctgatgagctgcaagagctggtccattctctgtcttatgtttatcagaggagcacca 2590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ctcctgatgagctgcaagagctggtccattctctgtcttatgtttatcagaggagcacca 489
Query: 2591 ctgccatttctgtggttgctccaatctgctat-gctcatcttgctgcaacacagattggg 2649
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 488 ctgccatttctgtggttgctccaatctgctatggctcatcttgctgcaacacagattggg 429
Query: 2650 cagtttatgaagttcgaggacaagtctgatacgtcttcgagccatggggggcttactgct 2709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cagtttatgaagttcgaggacaagtctgatacgtcttcgagccatggggggcttactgct 369
Query: 2710 gctggtgttgctcctgtcgtccctcagttgcctaagttgcaggatagcgtcag-cagttc 2768
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 368 gctggtgttgctcctgtcgtccctcagttgcctaagttgcaggatagcgtcagccagttc 309
Query: 2769 tatgtttttctgttga 2784
||||||||||||||||
Sbjct: 308 tatgtttttctgttga 293
>KMC013845A_C01 KMC013845A_c01
Length = 587
Score = 123 bits (62), Expect = 1e-27
Identities = 209/258 (81%)
Strand = Plus / Plus
Query: 247 aacagtgatggacatttcttccagtacagtgtggctctttcttacgaggatgggcgccct 306
|||| ||||||||| |||||||| ||||||||| | || | || || || |||||||||
Sbjct: 283 aacaatgatggacacttcttccattacagtgtgaattttacctatgaagacgggcgccct 342
Query: 307 gtagaaggaaagggggttgggcgaaaagtgattgacaaggtgcaggagacatatggttct 366
|||||||| ||||| || ||| | || | || ||||||||||| ||||| ||| |||
Sbjct: 343 gtagaaggtaagggtgtagggaggaagataatggacaaggtgcaagagacttatcagtct 402
Query: 367 gagttgaatgggaaagactttgcctatgatggggagaagactttgtttaccattggttct 426
|| || ||||| || |||||||| |||||||||||||||| | |||| || ||||| ||
Sbjct: 403 gacttaaatggcaaggactttgcgtatgatggggagaagagtctgttcactattggctcc 462
Query: 427 cttgctcggaacaagcttgagtttacagttgttctagaggatgttatatctaacagaaac 486
||| || | ||||||||||||| | ||||||||| |||||||| | ||| |||||||||
Sbjct: 463 cttcctagaaacaagcttgagtatgaagttgttctggaggatgtgacatcaaacagaaac 522
Query: 487 aatggaaactgcagccct 504
||||| || || ||||||
Sbjct: 523 aatggcaattgtagccct 540
>KMC000037A_C01 KMC000037A_c01
Length = 675
Score = 113 bits (57), Expect = 1e-24
Identities = 168/205 (81%)
Strand = Plus / Minus
Query: 2523 tggtttttctcctgatgagctgcaagagctggtccattctctgtcttatgtttatcagag 2582
|||||| ||||||||||| ||||| ||||| || || ||| || ||||| ||||||||
Sbjct: 672 tggtttctctcctgatgaactgcaggagcttgtacacagtctatcatatgtgtatcagag 613
Query: 2583 gagcaccactgccatttctgtggttgctccaatctgctatgctcatcttgctgcaacaca 2642
|||||||||||| |||||||| |||||||| || |||||||| || | |||||||| ||
Sbjct: 612 gagcaccactgcaatttctgttgttgctcctatatgctatgcccacttggctgcaaccca 553
Query: 2643 gattgggcagtttatgaagttcgaggacaagtctgatacgtcttcgagccatggggggct 2702
| | || ||||| ||||| ||||||||||| ||||| || || || |||||||| || ||
Sbjct: 552 gttgggccagttcatgaaattcgaggacaaatctgagacatcatcaagccatggtggact 493
Query: 2703 tactgctgctggtgttgctcctgtc 2727
| ||||||||| | || |||||||
Sbjct: 492 gagtgctgctggagctgttcctgtc 468
>KMC013416A_C01 KMC013416A_c01
Length = 588
Score = 54.0 bits (27), Expect = 8e-07
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 2566 tcttatgtttatcagaggagcaccactgccatttctgtggttgctccaatctgctatgc 2624
|||||||| |||| ||||||||||||||||| ||||| ||||| || || ||||||||
Sbjct: 426 tcttatgtgtatccaaggagcaccactgccatatctgttgttgcccccatatgctatgc 368
>KMC004888A_C01 KMC004888A_c01
Length = 558
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 22 aatggaaatgggaatgggaatgggaat 48
||||| |||||||||||||||||||||
Sbjct: 217 aatgggaatgggaatgggaatgggaat 191
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 28 aatgggaatgggaatgggaatg 49
||||||||||||||||||||||
Sbjct: 217 aatgggaatgggaatgggaatg 196
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,428
Number of Sequences: 8469
Number of extensions: 11428
Number of successful extensions: 3314
Number of sequences better than 1.0e-03: 6
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3295
Number of HSP's gapped (non-prelim): 11
length of query: 2784
length of database: 5,164,774
effective HSP length: 17
effective length of query: 2767
effective length of database: 5,020,801
effective search space: 13892556367
effective search space used: 13892556367
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)