Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001433A_C01 KMC001433A_c01
(636 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565633.1| Argonaute (AGO1)-like protein; protein id: At2g... 236 2e-61
pir||A84668 Argonaute (AGO1)-like protein [imported] - Arabidops... 229 2e-59
dbj|BAC42876.1| putative zwille/pinhead [Arabidopsis thaliana] 200 1e-50
ref|NP_197613.1| zwille/pinhead-like protein; protein id: At5g21... 200 1e-50
emb|CAD66636.1| ARGONAUTE9 protein [Arabidopsis thaliana] 200 1e-50
>ref|NP_565633.1| Argonaute (AGO1)-like protein; protein id: At2g27040.1, supported
by cDNA: gi_14334815, supported by cDNA: gi_15293198
[Arabidopsis thaliana] gi|14334816|gb|AAK59586.1|
putative Argonaute (AGO1) protein [Arabidopsis thaliana]
gi|15293199|gb|AAK93710.1| putative argonaute AGO1
protein [Arabidopsis thaliana]
gi|20197419|gb|AAC77862.2| Argonaute (AGO1)-like protein
[Arabidopsis thaliana]
Length = 924
Score = 236 bits (601), Expect = 2e-61
Identities = 119/195 (61%), Positives = 152/195 (77%), Gaps = 2/195 (1%)
Frame = +1
Query: 58 ENGNG-NGNGNEDLMPPPPPPPIVPADVEPVKVDLLDLPPEPVKKKLPTRLPIARKGLGS 234
E+ NG NG+G + +PPPPP ++P +VEPV+V E +KK P R+P+ARKG G+
Sbjct: 12 ESANGANGSGVTEALPPPPP--VIPPNVEPVRVKT-----ELAEKKGPVRVPMARKGFGT 64
Query: 235 KGTKLPLLTNHFKVTVANSDGHFFQYSVALSYEDGRPVEGKGVGRKVIDKVQETYGSELN 414
+G K+PLLTNHFKV VAN GHFF YSVAL Y+DGRPVE KGVGRK++DKV +TY S+L+
Sbjct: 65 RGQKIPLLTNHFKVDVANLQGHFFHYSVALFYDDGRPVEQKGVGRKILDKVHQTYHSDLD 124
Query: 415 GKDFAYDGEKTLFTIGSLARNKLEFTVVLEDVISNRNNGNCSPDG-ASTNDSDKKRMRRP 591
GK+FAYDGEKTLFT G+L NK++F+VVLE+V + R NGN SP+G S +D D+KR+RRP
Sbjct: 125 GKEFAYDGEKTLFTYGALPSNKMDFSVVLEEVSATRANGNGSPNGNESPSDGDRKRLRRP 184
Query: 592 YHSKTFKVEISFAAK 636
SK F+VEIS+AAK
Sbjct: 185 NRSKNFRVEISYAAK 199
>pir||A84668 Argonaute (AGO1)-like protein [imported] - Arabidopsis thaliana
Length = 930
Score = 229 bits (585), Expect = 2e-59
Identities = 119/201 (59%), Positives = 153/201 (75%), Gaps = 8/201 (3%)
Frame = +1
Query: 58 ENGNG-NGNGNEDLMPPPPPPPIVPADVEPVKVDLLDLPPEPVKKKLPTRLPIARKGLGS 234
E+ NG NG+G + +PPPPP ++P +VEPV+V E +KK P R+P+ARKG G+
Sbjct: 12 ESANGANGSGVTEALPPPPP--VIPPNVEPVRVKT-----ELAEKKGPVRVPMARKGFGT 64
Query: 235 KGTKLPLLTNHFKVTVANSDGHFFQYSVALSYEDGRPVEGKGVGRKVIDKVQETYGSELN 414
+G K+PLLTNHFKV VAN GHFF YSVAL Y+DGRPVE KGVGRK++DKV +TY S+L+
Sbjct: 65 RGQKIPLLTNHFKVDVANLQGHFFHYSVALFYDDGRPVEQKGVGRKILDKVHQTYHSDLD 124
Query: 415 GKDFAYDGEKTLFTIGSLARNKLEFTVVLEDVIS------NRNNGNCSPDG-ASTNDSDK 573
GK+FAYDGEKTLFT G+L NK++F+VVLE+V + +R NGN SP+G S +D D+
Sbjct: 125 GKEFAYDGEKTLFTYGALPSNKMDFSVVLEEVSATSKDFVSRANGNGSPNGNESPSDGDR 184
Query: 574 KRMRRPYHSKTFKVEISFAAK 636
KR+RRP SK F+VEIS+AAK
Sbjct: 185 KRLRRPNRSKNFRVEISYAAK 205
>dbj|BAC42876.1| putative zwille/pinhead [Arabidopsis thaliana]
Length = 304
Score = 200 bits (508), Expect = 1e-50
Identities = 105/178 (58%), Positives = 130/178 (72%), Gaps = 1/178 (0%)
Frame = +1
Query: 106 PPPPPIVPADVEPVKVDLLDLPPEPVKKKLPTRLPIAR-KGLGSKGTKLPLLTNHFKVTV 282
PPPPP VPA++ P EPVKK + LP+AR +G GSKG K+PLLTNHF V
Sbjct: 12 PPPPPFVPANLVP--------EVEPVKKNI--LLPMARPRGSGSKGQKIPLLTNHFGVKF 61
Query: 283 ANSDGHFFQYSVALSYEDGRPVEGKGVGRKVIDKVQETYGSELNGKDFAYDGEKTLFTIG 462
G+FF YSVA++YEDGRPVE KG+GRK++DKVQETY S+L K FAYDGEKTLFT+G
Sbjct: 62 NKPSGYFFHYSVAINYEDGRPVEAKGIGRKILDKVQETYQSDLGAKYFAYDGEKTLFTVG 121
Query: 463 SLARNKLEFTVVLEDVISNRNNGNCSPDGASTNDSDKKRMRRPYHSKTFKVEISFAAK 636
+L NKL+F+VVLE++ S+RN+ G TND+D+KR RRP +K F VEIS+AAK
Sbjct: 122 ALPSNKLDFSVVLEEIPSSRNHA-----GNDTNDADRKRSRRPNQTKKFMVEISYAAK 174
>ref|NP_197613.1| zwille/pinhead-like protein; protein id: At5g21150.1 [Arabidopsis
thaliana] gi|29294055|gb|AAO73892.1| PAZ (Piwi Argonaut
and Zwille) family [Arabidopsis thaliana]
Length = 892
Score = 200 bits (508), Expect = 1e-50
Identities = 105/178 (58%), Positives = 130/178 (72%), Gaps = 1/178 (0%)
Frame = +1
Query: 106 PPPPPIVPADVEPVKVDLLDLPPEPVKKKLPTRLPIAR-KGLGSKGTKLPLLTNHFKVTV 282
PPPPP VPA++ P EPVKK + LP+AR +G GSKG K+PLLTNHF V
Sbjct: 12 PPPPPFVPANLVP--------EVEPVKKNI--LLPMARPRGSGSKGQKIPLLTNHFGVKF 61
Query: 283 ANSDGHFFQYSVALSYEDGRPVEGKGVGRKVIDKVQETYGSELNGKDFAYDGEKTLFTIG 462
G+FF YSVA++YEDGRPVE KG+GRK++DKVQETY S+L K FAYDGEKTLFT+G
Sbjct: 62 NKPSGYFFHYSVAINYEDGRPVEAKGIGRKILDKVQETYQSDLGAKYFAYDGEKTLFTVG 121
Query: 463 SLARNKLEFTVVLEDVISNRNNGNCSPDGASTNDSDKKRMRRPYHSKTFKVEISFAAK 636
+L NKL+F+VVLE++ S+RN+ G TND+D+KR RRP +K F VEIS+AAK
Sbjct: 122 ALPSNKLDFSVVLEEIPSSRNHA-----GNDTNDADRKRSRRPNQTKKFMVEISYAAK 174
>emb|CAD66636.1| ARGONAUTE9 protein [Arabidopsis thaliana]
Length = 896
Score = 200 bits (508), Expect = 1e-50
Identities = 105/178 (58%), Positives = 130/178 (72%), Gaps = 1/178 (0%)
Frame = +1
Query: 106 PPPPPIVPADVEPVKVDLLDLPPEPVKKKLPTRLPIAR-KGLGSKGTKLPLLTNHFKVTV 282
PPPPP VPA++ P EPVKK + LP+AR +G GSKG K+PLLTNHF V
Sbjct: 12 PPPPPFVPANLVP--------EVEPVKKNI--LLPMARPRGSGSKGQKIPLLTNHFGVKF 61
Query: 283 ANSDGHFFQYSVALSYEDGRPVEGKGVGRKVIDKVQETYGSELNGKDFAYDGEKTLFTIG 462
G+FF YSVA++YEDGRPVE KG+GRK++DKVQETY S+L K FAYDGEKTLFT+G
Sbjct: 62 NKPSGYFFHYSVAINYEDGRPVEAKGIGRKILDKVQETYQSDLGAKYFAYDGEKTLFTVG 121
Query: 463 SLARNKLEFTVVLEDVISNRNNGNCSPDGASTNDSDKKRMRRPYHSKTFKVEISFAAK 636
+L NKL+F+VVLE++ S+RN+ G TND+D+KR RRP +K F VEIS+AAK
Sbjct: 122 ALPSNKLDFSVVLEEIPSSRNHA-----GNDTNDADRKRSRRPNQTKKFMVEISYAAK 174
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.312 0.134 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 636,866,763
Number of Sequences: 1393205
Number of extensions: 17371320
Number of successful extensions: 147290
Number of sequences better than 10.0: 696
Number of HSP's better than 10.0 without gapping: 63424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114919
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
