Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004888A_C01 KMC004888A_c01
(558 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL92969.1|AC116027_1 hypothetical protein [Dictyostelium dis... 36 0.37
ref|NP_704328.1| hypothetical protein [Plasmodium falciparum 3D7... 34 1.4
ref|NP_206988.1| conserved hypothetical integral membrane protei... 33 2.4
dbj|BAC65565.1| mKIAA0439 protein [Mus musculus] 33 2.4
ref|NP_222896.1| putative [Helicobacter pylori J99] gi|8928477|s... 33 2.4
>gb|AAL92969.1|AC116027_1 hypothetical protein [Dictyostelium discoideum]
Length = 234
Score = 35.8 bits (81), Expect = 0.37
Identities = 21/78 (26%), Positives = 36/78 (45%)
Frame = +1
Query: 25 HDNDQNKTQYQTKHM*QPVGSKQNKFKVKKHKDLNPVSNKTHM*QPIATKPNSFSNSHSH 204
H ++Q + H QN H DL+P + H + + + S+SH+H
Sbjct: 164 HTHEQGHGHHHNHH------HNQNDHHHHHHNDLDPSHHHHHHHEDDHSHEHGHSHSHTH 217
Query: 205 SHSHYGAES*HEESCSFH 258
+HSH G+E + + +FH
Sbjct: 218 THSHPGSEETY-QCMNFH 234
>ref|NP_704328.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23499067|emb|CAD51147.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 891
Score = 33.9 bits (76), Expect = 1.4
Identities = 22/66 (33%), Positives = 33/66 (49%)
Frame = +1
Query: 34 DQNKTQYQTKHM*QPVGSKQNKFKVKKHKDLNPVSNKTHM*QPIATKPNSFSNSHSHSHS 213
D+NK Q K+ K+NK K+ + N + +H + +S SNSHS+SHS
Sbjct: 74 DKNKNFIQYKNF------KKNKSYKYKNNNNNIIIINSHSHSNSHSNSHSHSNSHSNSHS 127
Query: 214 HYGAES 231
H + S
Sbjct: 128 HSNSHS 133
>ref|NP_206988.1| conserved hypothetical integral membrane protein [Helicobacter
pylori 26695] gi|8928453|sp|O24989|Y189_HELPY
Hypothetical protein HP0189 gi|7449007|pir||E64543
conserved hypothetical integral membrane protein HP0189
- Helicobacter pylori (strain 26695)
gi|2313276|gb|AAD07256.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
Length = 177
Score = 33.1 bits (74), Expect = 2.4
Identities = 13/31 (41%), Positives = 21/31 (66%)
Frame = -1
Query: 102 ELVLFATYWLLHVFCLILCFILIIIMF*FLK 10
E VLFAT WLL C+ + +L+++ + F+K
Sbjct: 7 ERVLFATRWLLAPLCIAMSLVLVVLGYVFMK 37
>dbj|BAC65565.1| mKIAA0439 protein [Mus musculus]
Length = 442
Score = 33.1 bits (74), Expect = 2.4
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = -1
Query: 180 IWFGSYWLLHMCFV*YWIQIFVFFNFELVLFATY---WLLHVFCLILCF 43
+WFGS W +F+F F LVLF +L+ +FC + CF
Sbjct: 353 VWFGSVW------------VFLFLVFGLVLFCFVGFCFLVFLFCFVFCF 389
>ref|NP_222896.1| putative [Helicobacter pylori J99] gi|8928477|sp|Q9ZMP3|Y189_HELPJ
Hypothetical protein JHP0175 gi|7449006|pir||D71963
hypothetical protein jhp0175 - Helicobacter pylori
(strain J99) gi|4154694|gb|AAD05759.1| putative
[Helicobacter pylori J99]
Length = 177
Score = 33.1 bits (74), Expect = 2.4
Identities = 13/31 (41%), Positives = 21/31 (66%)
Frame = -1
Query: 102 ELVLFATYWLLHVFCLILCFILIIIMF*FLK 10
E VLFAT WLL C+ + +L+++ + F+K
Sbjct: 7 ERVLFATRWLLAPLCIAMSLVLVVLGYVFMK 37
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,388,191
Number of Sequences: 1393205
Number of extensions: 10249993
Number of successful extensions: 33982
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 29118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33141
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
