Miyakogusa Predicted Gene
- chr1.CM0094.360.nc
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr1.CM0094.360.nc + phase: 0
(2970 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC000508A_C01 KMC000508A_c01 1233 0.0
KMC005486A_C01 KMC005486A_c01 341 2e-93
KMC000542A_C01 KMC000542A_c01 281 2e-75
>KMC000508A_C01 KMC000508A_c01
Length = 859
Score = 1233 bits (622), Expect = 0.0
Identities = 653/662 (98%), Gaps = 1/662 (0%)
Strand = Plus / Minus
Query: 2310 gaaggaagctcctgtgcttggtgcatttagtcctaagaagggtgacacagtcctttgtta 2369
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 859 gaaggaagctcctgtgcttggtgcatttagtcctaagaagggtgacacagtcccttgtta 800
Query: 2370 ttttcatggcgataagtcctggtaccgggcaatggttgtgaatacacctcgaggaccagt 2429
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 799 ttttcatggcgataagtcctggtaccgggccatggttgtgaatacacctcgaggaccagg 740
Query: 2430 tgaatctcctcaggacatatttgaagtattctacattgactatggaaatcaagaacaagt 2489
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tgaatctcctcaggacatatatgaagtattctacattgactatggaaatcaagaacaagt 680
Query: 2490 agcttacagtcagttacgacctcttgatcagtccgtgtctgccgcacccggtcttgctca 2549
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 agcttacagtcacttacgacctcttgatcagtccgtgtctgccgcacccggtcttgctca 620
Query: 2550 attgtgcagtcttgcatacattaaaagtccaagcttggaagaggatttcggccaagaagc 2609
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 619 attgtgcagtctcgcatacattaaaagtccaagcttggaagaggatttcggcccagaacc 560
Query: 2610 agctgaatatttgagtgaactcact-ttaagcagtggaaaagagttcagagcccaggttg 2668
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 559 agctgaatatttgagtgaactcactcttaagcagtggaaaagagttcagagcccaggttg 500
Query: 2669 aggagagagatacttctggaggaaaagcaaaagggcagggaactgggacaattcttgctg 2728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aggagagagatacttctggaggaaaagcaaaagggcagggaactgggacaattcttgctg 440
Query: 2729 taactcttgttgctgtggatgctgagatcagcgttaacgcagccatgctacaggaaggac 2788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 taactcttgttgctgtggatgctgagatcagcgttaacgcagccatgctacaggaaggac 380
Query: 2789 tagccaggatggaaaaaaggaatcggtgggacagaaaagaaagaaaggcgggtcttgata 2848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tagccaggatggaaaaaaggaatcggtgggacagaaaagaaagaaaggcgggtcttgata 320
Query: 2849 gtctggaaaaattccaggacgaggcacgcaccaaacggcgtgggatgtggcagtatggag 2908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtctggaaaaattccaggacgaggcacgcaccaaacggcgtgggatgtggcagtatggag 260
Query: 2909 atgttgagtcagatgaggaggacggtcctccggcgagaaaagctggtactggccgcaaat 2968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 atgttgagtcagatgaggaggacggtcctccggcgagaaaagctggtactggccgcaaat 200
Query: 2969 ga 2970
||
Sbjct: 199 ga 198
>KMC005486A_C01 KMC005486A_c01
Length = 616
Score = 341 bits (172), Expect = 2e-93
Identities = 193/200 (96%)
Strand = Plus / Plus
Query: 1 atggcatcggcagcgactggagctacaggatggtacaggggaagggtgaaggcggttccc 60
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 atggcatcggctgcgactggagctacaggatggtacaggggaagggtgaaggcggttcct 476
Query: 61 tcaggggattgcttggtcattgtggccgttgctagctccaagcctggtcctctgcctgag 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tcaggggattgcttggtcattgtggccgttgctagctccaagcctggtcctctgcctgaa 536
Query: 121 aaatcaatcactctgtcttctcttattgctcctcggctggcgcggagaggcggtgtggat 180
||||||||||||||| ||||||||||| ||||| | ||||||||||||||||||||||||
Sbjct: 537 aaatcaatcactctggcttctcttattactcctagactggcgcggagaggcggtgtggat 596
Query: 181 gaaccatttgcatgggaaag 200
||||||||||||||||||||
Sbjct: 597 gaaccatttgcatgggaaag 616
>KMC000542A_C01 KMC000542A_c01
Length = 565
Score = 281 bits (142), Expect = 2e-75
Identities = 198/216 (91%), Gaps = 3/216 (1%)
Strand = Plus / Minus
Query: 2752 gagatcagcgttaacgcagccatgctacaggaaggactagccaggatggaaaaaaggaat 2811
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 565 gagatcagcgttaacgctgccatgctacaggaaggacttgccaggatggaaaaaaggaac 506
Query: 2812 cggtgggacagaaaagaaagaaaggcgggtcttgatagtctggaaaaattccaggacgag 2871
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 505 cggtgggacagaaaagaaagaaaggtgggtcttgatagtctgcaaaaattccaggacgat 446
Query: 2872 gcacgcaccaaacggcgtgggatgtggcagtatggagatgttgagtcagatgaggaggac 2931
||||||| |||||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct: 445 gcacgcaaggaacggcgtggaatgtggcagtatggagatgtcgagtcagatgatgaggac 386
Query: 2932 ---ggtcctccggcgagaaaagctggtactggccgc 2964
| |||||||||||||||||| ||| ||||||||
Sbjct: 385 actgctcctccggcgagaaaagccggtgctggccgc 350
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,113
Number of Sequences: 8469
Number of extensions: 10113
Number of successful extensions: 2814
Number of sequences better than 1.0e-03: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2807
Number of HSP's gapped (non-prelim): 5
length of query: 2970
length of database: 5,164,774
effective HSP length: 17
effective length of query: 2953
effective length of database: 5,020,801
effective search space: 14826425353
effective search space used: 14826425353
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)