Miyakogusa Predicted Gene
- chr1.CM0017.200.nc
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr1.CM0017.200.nc + phase: 0
(969 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC003023A_C01 KMC003023A_c01 1116 0.0
KMC005424A_C01 KMC005424A_c01 801 0.0
>KMC003023A_C01 KMC003023A_c01
Length = 599
Score = 1116 bits (563), Expect = 0.0
Identities = 586/591 (99%), Gaps = 2/591 (0%)
Strand = Plus / Plus
Query: 5 tcaaaatgaagatgaggttgggaatagcaatactggtgtcgtttatactagtaggatggt 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 tcaaaatgaagatgaggt-gggaatagcaatactggtgtcgtttatactagtaggatggt 68
Query: 65 gcaggggagagcaatgcggaagccaagcagggggtgctctg-tgtcccggtgggatatgt 123
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 69 gcagaggagagcaatgcggaagccaagcagggggtgctctggtgtcccggtgggatatgt 128
Query: 124 tgcagcaaatacgggtggtgcggttcaacttctgagtactgcggcgaaggttgccagagt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tgcagcaaatacgggtggtgcggttcaacttctgagtactgcggcgaaggttgccagagt 188
Query: 184 caatgtggtggcagtaccggtggtggtgaccttgggagcatcatctcaagggacaccttc 243
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 caaggtggtggcagtaccggtggtggtgaccttgggagcatcatctcaagggacaccttc 248
Query: 244 aacacgatgctcaagcatcgtgatgatggagggtgtccagctaaagggttttacacctat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aacacgatgctcaagcatcgtgatgatggagggtgtccagctaaagggttttacacctat 308
Query: 304 gatgcttttatttcagctgccaaggcttaccccagctttggtaccaccggcgatacctcc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gatgcttttatttcagctgccaaggcttaccccagctttggtaccaccggcgatacctcc 368
Query: 364 actcgcaaaagagaaattgctgctttcttcggccaaacttctcatgaaactactgggggt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 actcgcaaaagagaaattgctgctttcttcggccaaacttctcatgaaactactgggggt 428
Query: 424 tgggctactgcaccggatggcccttacgcttggggatattgctttgttagggaacaaaac 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 agggctactgcaccggatggcccttacgcttggggatattgctttgttagggaacaaaac 488
Query: 484 ccaagtgcctattgctccccaagttctcaatggccttgtgcttctggcaagcaatactat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ccaagtgcctattgctccccaagttctcaatggccttgtgcttctggcaagcaatactat 548
Query: 544 ggtcgcggtccaatccaaatcacatggaactacaactatgggcaatgcgga 594
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ggtcgcggtccaatccaaatcacatggaactacaactatgggcaatgcgga 599
>KMC005424A_C01 KMC005424A_c01
Length = 575
Score = 801 bits (404), Expect = 0.0
Identities = 410/412 (99%)
Strand = Plus / Minus
Query: 558 ccaaatcacatggaactacaactatgggcaatgcggaagagcaattggtgcggacttgct 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ccaaatcacatggaactacaactatgggcaatgcggaagagcaattggtgcggacttgct 516
Query: 618 gaacaacccagatgctgtagcaactgacgcagtgatctcattcaagacagcgatctggtt 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaacaacccagatgctgtagcaactgacgcagtgatctcattcaagacagcgatctggtt 456
Query: 678 ctggatgacggcacaatcaccgaagccttcatgccacgacgtcatcaccggaagatggag 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ctggatgacggcacaatcaccgaagccttcatgccacgacgtcatcaccggaagatggag 396
Query: 738 tccatcaagtgctgatcaggcagcagggagggtttccgggtacggcactgtcaccaacat 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tccatcaagtgctgatcaggcagcagggagggtttccgggtacggcactgtcaccaacat 336
Query: 798 catcaacggtggacttgaatgcgggaaagggcaggatagcagggtgcaggatcgcatagg 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 catcaacggtggacttgaatgcgggaaagggcaggatagcagggtgcaggatcgcatagg 276
Query: 858 gttttataagagatactgtgacttgcttggagttgggtatggcaataaccttgactgtgc 917
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 275 gttttataagagatactgtgacttgcttggagttgggtatggccataaccttgactgtgc 216
Query: 918 ttctcagagaccatttggctctaattcacagctccttctcgacaccatctag 969
|||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ttctcagagaccctttggctctaattcacagctccttctcgacaccatctag 164
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2834
Number of Sequences: 8469
Number of extensions: 2834
Number of successful extensions: 794
Number of sequences better than 1.0e-03: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 788
Number of HSP's gapped (non-prelim): 4
length of query: 969
length of database: 5,164,774
effective HSP length: 16
effective length of query: 953
effective length of database: 5,029,270
effective search space: 4792894310
effective search space used: 4792894310
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)