Miyakogusa Predicted Gene

Lj6g3v1055630.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7KW48_SOYBN 1216 90.6 93.5 (tr|K7KW48) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G32490.2 1132 81.8 90.4 | Symbols: ESP3 | RNA helicase family protein | chr1:11742356-11749286 REVERSE LENGTH=1034
Medicago Medtr3g023880.2 1199 88.5 92.8 | pre-mRNA-splicing factor ATP-dependent RNA helicase | HC | chr3:7279343-7291756 | 20130731
Soybean Glyma06g21830.1 1195 89.4 92.4  
LJGI gnl|LJGI|TC64545 1183 99.8 99.8 homologue to UniRef100_A7PDE9 Cluster: Chromosome chr17 scaffold_12, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr17 scaffold_12, whole genome shotgun sequence - Vitis vinifera (Grape), partial (31%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1055630.1 length: 638 aa.
IPR001650 Helicase, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 4.9e-13 242-329
HMMSmart SM00490 helicase 3.8e-18 221-329
ProfileScan PS51194 HELICASE_CTER 17.052 195-370
IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
PatternScan PS00690 DEAH_ATP_HELICASE NA 114-123
IPR007502 Helicase-associated domain
Molecular Function GO:0004386 helicase activity    
HMMPfam PF04408 HA2 3.2e-25 390-482
HMMSmart SM00847 Helicase 1.2e-33 390-482
IPR011709 Domain of unknown function DUF1605
HMMPfam PF07717 OB_NTP_bind 7.4e-31 516-616
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 7e-30 1-181
ProfileScan PS51192 HELICASE_ATP_BIND_1 19.689 9-172
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 5.8e-126 1-523
no_ID  
Coil coil coiled-coil NA 508-529
Gene3D G3DSA:3.40.50.300 no description 1.1e-11 3-156
200-341
HMMPanther PTHR18934 ATP-DEPENDENT 0 1-633
Seg seg seg NA 53-65
385-404
Wolf-PSORT
Lj6g3v1055630.1	cyto 6, chlo 4, cyto_nucl 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1055630.1