Miyakogusa Predicted Gene

Lj5g3v0539760.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7I6Z3_MEDTR 940 79.8 86.5 (tr|G7I6Z3) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_1g012380 PE=4 SV=1
TAIR_pep AT4G21065.1 501 45.7 66.7 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:11245976-11247763 FORWARD LENGTH=595
Medicago Medtr1g012380.1 940 79.8 86.5 | PPR containing plant-like protein | HC | chr1:2444546-2447496 | 20130731
Soybean Glyma17g31710.1 882 78.2 86.6  
LJGI gnl|LJGI|TC79638 856 100.0 100.0 similar to UniRef100_A7P5R6 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (28%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v0539760.1 length: 627 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.1 293-318
394-418
HMMPfam PF13041 PPR_2 8.8e-11 219-266
321-368
HMMPfam PF13812 PPR_3 0.014 108-141
HMMTigr TIGR00756 PPR: 0.0009 221-255
292-318
322-355
358-390
ProfileScan PS51375 PPR 6.588 106-141
142-176
219-253
320-354
289-319
254-288
355-385
391-421
423-453
457-491
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 0.00053 424-476
no_ID  
HMMPanther PTHR24015 FAMILY 1.9e-257 33-627
HMMPanther PTHR24015:SF167PENTATRICOPEPTIDE (PPR) 1.9e-257 33-627
HMMPfam PF14432 DYW_deaminase 4.6e-18 504-617
Seg seg seg NA 10-30
38-62
189-206
Wolf-PSORT
Lj5g3v0539760.1	chlo 10, mito 2.5, cyto_mito 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v0539760.1