Miyakogusa Predicted Gene
- Lj5g3v0539760.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v0539760.1 tr|G7I6Z3|G7I6Z3_MEDTR Pentatricopeptide
repeat-containing protein OS=Medicago truncatula
GN=MTR_1g0,79.28,0,seg,NULL; PPR_2,Pentatricopeptide repeat;
PPR,Pentatricopeptide repeat; PPR_3,Pentatricopeptide
repe,CUFF.53249.1
(1884 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC79638 similar to UniRef100_A7P5R6 Cluster: Chromosome... 856 0.0
gnl|LJGI|DC600049 weakly similar to UniRef100_A7P6T0 Cluster: Ch... 841 0.0
gnl|LJGI|FS346205 similar to UniRef100_A7Q044 Cluster: Chromosom... 62 1e-08
>gnl|LJGI|TC79638 similar to UniRef100_A7P5R6 Cluster: Chromosome chr4 scaffold_6,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_6, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (28%)
Length = 932
Score = 856 bits (432), Expect = 0.0
Identities = 432/432 (100%)
Strand = Plus / Plus
Query: 1453 gatatgagagggatgaagaaggttccagggagcaccatgattgagctgaacaacgaaatg 1512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatatgagagggatgaagaaggttccagggagcaccatgattgagctgaacaacgaaatg 60
Query: 1513 tgcgagtttgtcgctggagataagtcacatgatcaatacaagcaaatatatgaaatggtg 1572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgcgagtttgtcgctggagataagtcacatgatcaatacaagcaaatatatgaaatggtg 120
Query: 1573 gatgagatgggaagggaaattaagagggcagggtatgttcctacaacatctcaggtttta 1632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gatgagatgggaagggaaattaagagggcagggtatgttcctacaacatctcaggtttta 180
Query: 1633 cttgacattgatgaagaagataaagaagatgctttgtataagcacagtgaaaagcttgca 1692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cttgacattgatgaagaagataaagaagatgctttgtataagcacagtgaaaagcttgca 240
Query: 1693 atagcttttgctcttctgaacacgccccctggaacaccaatcagaattgtgaaaaacttg 1752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atagcttttgctcttctgaacacgccccctggaacaccaatcagaattgtgaaaaacttg 300
Query: 1753 cgcgtttgtgaagattgtcattctgctactaagttcatatctaaggtttataaccgagag 1812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cgcgtttgtgaagattgtcattctgctactaagttcatatctaaggtttataaccgagag 360
Query: 1813 attgtggtcagggaccgcaatcgcttccaccatttcaagaatggtttgtgttcatgcgga 1872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 attgtggtcagggaccgcaatcgcttccaccatttcaagaatggtttgtgttcatgcgga 420
Query: 1873 gacttctggtaa 1884
||||||||||||
Sbjct: 421 gacttctggtaa 432
>gnl|LJGI|DC600049 weakly similar to UniRef100_A7P6T0 Cluster: Chromosome chr9
scaffold_7, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr9 scaffold_7, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (7%)
Length = 424
Score = 841 bits (424), Expect = 0.0
Identities = 424/424 (100%)
Strand = Plus / Plus
Query: 47 ccacactcaccaatctcaccctccaacttcccccaaccaccacaagatcaagagttgcag 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccacactcaccaatctcaccctccaacttcccccaaccaccacaagatcaagagttgcag 60
Query: 107 aacaaacctgcttaactctcctcaactcctgcaccaccctcaccactctcacccaaatcc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aacaaacctgcttaactctcctcaactcctgcaccaccctcaccactctcacccaaatcc 120
Query: 167 acaccctcatcctcaaactcggcctcatcaacaacccactcgttctcaccaaattcgccg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acaccctcatcctcaaactcggcctcatcaacaacccactcgttctcaccaaattcgccg 180
Query: 227 ccacctcctccaccttcaacgccattcactacgccacctccttcctcttctccgatgacc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ccacctcctccaccttcaacgccattcactacgccacctccttcctcttctccgatgacc 240
Query: 287 caaccaccgcgcctcgcgcttcctccttcgatgccttcctcttcaacacgctcatcaggg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caaccaccgcgcctcgcgcttcctccttcgatgccttcctcttcaacacgctcatcaggg 300
Query: 347 ccttcgctcatacccctcagtcgaagtccagtgggttgcagttgtaccggacaatgctac 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccttcgctcatacccctcagtcgaagtccagtgggttgcagttgtaccggacaatgctac 360
Query: 407 gttacggcgtcgtgcccaacaagtttacttacccgtttgtgctcaaggcctgcgctggac 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gttacggcgtcgtgcccaacaagtttacttacccgtttgtgctcaaggcctgcgctggac 420
Query: 467 tcag 470
||||
Sbjct: 421 tcag 424
>gnl|LJGI|FS346205 similar to UniRef100_A7Q044 Cluster: Chromosome chr8 scaffold_41,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_41, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (31%)
Length = 679
Score = 61.9 bits (31), Expect = 1e-08
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 1738 attgtgaaaaacttgcgcgtttgtgaagattgtca 1772
||||||||||||||||| |||||||||||||||||
Sbjct: 282 attgtgaaaaacttgcgtgtttgtgaagattgtca 248