Miyakogusa Predicted Gene

Lj4g3v3113310.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7LBG4_MEDTR 1036 72.5 79.7 (tr|G7LBG4) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_8g105720 PE=4 SV=1
TAIR_pep AT3G23330.1 808 56.4 68.0 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:8347200-8349347 FORWARD LENGTH=715
Medicago Medtr8g105720.1 1036 72.5 79.7 | PPR containing plant-like protein | HC | chr8:44583313-44585824 | 20130731
Soybean Glyma05g34470.1 960 75.6 82.2  
LJGI gnl|LJGI|DC593078 593 99.3 99.3 weakly similar to UniRef100_A7Q9X6 Cluster: Chromosome chr8 scaffold_68, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_68, whole genome shotgun sequence - Vitis vinifera (Grape), partial (16%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v3113310.1 length: 709 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.015 78-107
376-401
404-434
439-466
HMMPfam PF13041 PPR_2 4e-09 200-243
301-348
HMMTigr TIGR00756 PPR: 0.0026 202-236
303-335
404-436
440-467
ProfileScan PS51375 PPR 5.218 75-109
145-182
200-234
235-269
301-335
270-300
402-436
371-401
437-467
473-503
539-573
505-535
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 1.3e-06 503-560
no_ID  
HMMPanther PTHR24015 FAMILY 0 4-709
HMMPanther PTHR24015:SF75 SUBFAMILY 0 4-709
HMMPfam PF14432 DYW_deaminase 2.1e-17 577-698
Seg seg seg NA 45-82
86-99
123-140
650-660
Wolf-PSORT
Lj4g3v3113310.1	chlo 8, mito 6
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v3113310.1