Miyakogusa Predicted Gene
- Lj4g3v2001930.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7MF06_SOYBN |
788 |
73.7 |
81.6 |
(tr|K7MF06) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT4G00290.1 |
562 |
67.5 |
82.9 |
| Symbols: | Mechanosensitive ion channel protein | chr4:123097-125300 REVERSE LENGTH=497 |
| Medicago |
Medtr8g028760.1 |
719 |
69.5 |
78.9 |
| mechanosensitive ion channel protein MscS | HC | chr8:11086924-11081197 | 20130731 |
| Soybean |
Glyma07g07350.1 |
773 |
73.3 |
81.4 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v2001930.1 |
length: 523 aa. |
| IPR006685 |
Mechanosensitive ion channel MscS |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0016020 |
membrane |
|
|
| Biological Process |
GO:0055085 |
transmembrane transport |
|
|
| HMMPfam |
PF00924 |
MS_channel |
5.1e-35 |
310-512 |
| IPR010920 |
Like-Sm (LSM) domain |
| superfamily |
SSF50182 |
Sm-like |
1.3e-16 |
352-418 |
| IPR011014 |
Mechanosensitive ion channel MscS, transmembrane-2 |
| Cellular Component |
GO:0016020 |
membrane |
|
|
| superfamily |
SSF82861 |
Mechanosensitive |
1.5e-10 |
263-351 |
| no_ID |
|
| Gene3D |
G3DSA:2.30.30.60 |
no description |
1.2e-12 |
368-416 |
| HMMPanther |
PTHR30566 |
YNAI-RELATED |
7.3e-33 |
173-513 |
| Seg |
seg |
seg |
NA |
94-111 |
- Wolf-PSORT
Lj4g3v2001930.1 chlo 10, vacu 2, mito 1, golg 1, E.R._vacu 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v2001930.1 |
Twilight zone |
-1.692 |
0 |
-4.989 |
0.88% |
3.297
|