Miyakogusa Predicted Gene

Lj4g3v2001930.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2001930.1 Non Chatacterized Hit- tr|I1KI66|I1KI66_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.40896 PE,74.77,0,Sm-like
ribonucleoproteins,Like-Sm (LSM) domain; Mechanosensitive channel
protein MscS (YggB), trans,CUFF.50078.1
         (523 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G00290.1 | Symbols:  | Mechanosensitive ion channel protein |...   562   e-160
AT4G00234.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...   290   2e-78
AT1G58200.2 | Symbols: MSL3 | MSCS-like 3 | chr1:21548370-215524...    70   2e-12
AT1G58200.1 | Symbols: MSL3 | MSCS-like 3 | chr1:21548370-215524...    70   2e-12
AT5G10490.3 | Symbols: MSL2 | MSCS-like 2 | chr5:3300376-3304550...    70   5e-12
AT5G10490.1 | Symbols: MSL2 | MSCS-like 2 | chr5:3300376-3304005...    70   5e-12
AT5G10490.2 | Symbols: MSL2 | MSCS-like 2 | chr5:3300376-3303836...    69   6e-12

>AT4G00290.1 | Symbols:  | Mechanosensitive ion channel protein |
           chr4:123097-125300 REVERSE LENGTH=497
          Length = 497

 Score =  562 bits (1448), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 260/385 (67%), Positives = 319/385 (82%)

Query: 132 WAERVKDTWKSVVETASYAGQKVKEASDDLTPHAQQLLDSHPYLNAVVIPVGGTLTATLV 191
           W E+ KD  ++ V+  +   +K K+ SD++ PH QQ LDS+PYL  V++PV  T+T TL 
Sbjct: 107 WVEKAKDVLQTSVDAVTETAKKTKDVSDEMIPHVQQFLDSNPYLKDVIVPVSLTMTGTLF 166

Query: 192 AWFLMPTILRKFHKYAMQGPVALIPGSLFGEPVPYEKSFWGALEDPVRYLVTFMAFSQIG 251
           AW +MP ILR+FH YAMQ    L+P     E VPYEKSFWGALEDP RYLVTF+AF+QI 
Sbjct: 167 AWVVMPRILRRFHTYAMQSSAKLLPVGFSNEDVPYEKSFWGALEDPARYLVTFIAFAQIA 226

Query: 252 VMVAPTTIASQYLAPAWRGAVILSFVWFLHRWKTNVFARTLSGQNSLGLDREKLLALDKI 311
            MVAPTTIA+QY +P  +GAVILS VWFL+RWKTNV  R LS ++  GLDREK+L LDK+
Sbjct: 227 AMVAPTTIAAQYFSPTVKGAVILSLVWFLYRWKTNVITRMLSAKSFGGLDREKVLTLDKV 286

Query: 312 SSVGLFVIGIMALAEACGVAVQSIVTVGGIGGVASAFAARDILGNVFSGLSMQFSKPFSI 371
           SSVGLF IG+MA AEACGVAVQSI+TVGG+GGVA+AFAARDILGNV SGLSMQFS+PFS+
Sbjct: 287 SSVGLFAIGLMASAEACGVAVQSILTVGGVGGVATAFAARDILGNVLSGLSMQFSRPFSM 346

Query: 372 GDTIKAGSIEGQVVEMGLTTTSLLSAEKFPVIVPNSLFSSQVIVNKSRAEYRAIITKIPL 431
           GDTIKAGS+EGQV+EMGLTTTSLL+AEKFPV+VPNSLFSSQVIVNKSRA++RAI +KIPL
Sbjct: 347 GDTIKAGSVEGQVIEMGLTTTSLLNAEKFPVLVPNSLFSSQVIVNKSRAQWRAIASKIPL 406

Query: 432 QIEDLSKIPQISGDVKNMLTSNARVFLGRDVPYCFLSRVESSYAELTLGYNLKHMRKDEL 491
           QI+DL  IPQIS ++K ML SN +VFLG++ P+C+LSRVE S+AELT+G NL  M K+EL
Sbjct: 407 QIDDLDMIPQISNEIKEMLRSNTKVFLGKEAPHCYLSRVEKSFAELTIGCNLIRMGKEEL 466

Query: 492 YSAEQDILLQAVQIIKNHGIALGST 516
           Y+ +Q++LL+AV+IIK HG++LG+T
Sbjct: 467 YNTQQEVLLEAVKIIKKHGVSLGTT 491


>AT4G00234.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: Mechanosensitive ion channel protein
           (TAIR:AT4G00290.1); Has 57 Blast hits to 57 proteins in
           12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 1
           (source: NCBI BLink). | chr4:100919-101788 FORWARD
           LENGTH=263
          Length = 263

 Score =  290 bits (741), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 134/222 (60%), Positives = 164/222 (73%)

Query: 118 GSGVSDMNAGGGGDWAERVKDTWKSVVETASYAGQKVKEASDDLTPHAQQLLDSHPYLNA 177
            SGV+    G G DW E+ KD  ++ V   +   +K K+ SD++ PH QQ LDS+PYL  
Sbjct: 41  ASGVTGSGDGNGNDWVEKAKDVVQTSVNAVAETAKKTKDVSDEMIPHVQQFLDSNPYLKD 100

Query: 178 VVIPVGGTLTATLVAWFLMPTILRKFHKYAMQGPVALIPGSLFGEPVPYEKSFWGALEDP 237
           V++PV  T+T TL AW +MP ILR+FH YAMQ    L+P     E +PYEKSFWGALEDP
Sbjct: 101 VIVPVSLTVTGTLFAWIVMPRILRRFHTYAMQSSAKLLPVGFSNEDIPYEKSFWGALEDP 160

Query: 238 VRYLVTFMAFSQIGVMVAPTTIASQYLAPAWRGAVILSFVWFLHRWKTNVFARTLSGQNS 297
            RYLVTF+AF+QI  MVAPTTIA+QY +P  +GAVILS VWFL+RWKTNV  R LS ++ 
Sbjct: 161 ARYLVTFIAFAQIAAMVAPTTIAAQYFSPTVKGAVILSVVWFLYRWKTNVITRMLSAKSF 220

Query: 298 LGLDREKLLALDKISSVGLFVIGIMALAEACGVAVQSIVTVG 339
            GLDR+K+L LDK+SSVGLF IG+MA AEACGVAVQSI+TVG
Sbjct: 221 GGLDRDKVLTLDKVSSVGLFAIGLMASAEACGVAVQSILTVG 262


>AT1G58200.2 | Symbols: MSL3 | MSCS-like 3 | chr1:21548370-21552488
           REVERSE LENGTH=678
          Length = 678

 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 98/197 (49%), Gaps = 7/197 (3%)

Query: 326 EACGVAVQSIVTVGGIGGVASAFAARDILGNVFSGLSMQFSKPFSIGDTIKAG----SIE 381
           E  G + Q  +T GG+G V    A R+IL N  S + +  ++PF + + I+       + 
Sbjct: 257 ELLGFSTQKWLTAGGLGTVLLTLAGREILTNFLSSIMIHATRPFVLNEWIQTKIGGYEVS 316

Query: 382 GQVVEMGLTTTSLLSA-EKFPVIVPNSLFSSQVIVNKSRAEYRAIITKIPLQIEDLSKIP 440
           G V ++G  + +++   ++  V +PN  FS  ++ N ++  +  I T + +   D+SKI 
Sbjct: 317 GTVEQVGWWSPTIIRGDDREAVHIPNHQFSVNIVRNLTQKTHWRIKTHLAISHLDVSKIN 376

Query: 441 QISGDVKNMLTSNARVFLGRDVPYCFLSRV--ESSYAELTLGYNLKHMRKDELYSAEQDI 498
            I  D++ +L+ N ++   +     FL  +  E+    + +   +K  R +E    ++ +
Sbjct: 377 NIVADMRKVLSKNPQIEQQKIHRRVFLEDIDPENQALRILISCFVKTSRFEEYLCVKEAV 436

Query: 499 LLQAVQIIKNHGIALGS 515
           LL  + +I++HG  L +
Sbjct: 437 LLDLLTVIRHHGARLAT 453


>AT1G58200.1 | Symbols: MSL3 | MSCS-like 3 | chr1:21548370-21552488
           REVERSE LENGTH=678
          Length = 678

 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 98/197 (49%), Gaps = 7/197 (3%)

Query: 326 EACGVAVQSIVTVGGIGGVASAFAARDILGNVFSGLSMQFSKPFSIGDTIKAG----SIE 381
           E  G + Q  +T GG+G V    A R+IL N  S + +  ++PF + + I+       + 
Sbjct: 257 ELLGFSTQKWLTAGGLGTVLLTLAGREILTNFLSSIMIHATRPFVLNEWIQTKIGGYEVS 316

Query: 382 GQVVEMGLTTTSLLSA-EKFPVIVPNSLFSSQVIVNKSRAEYRAIITKIPLQIEDLSKIP 440
           G V ++G  + +++   ++  V +PN  FS  ++ N ++  +  I T + +   D+SKI 
Sbjct: 317 GTVEQVGWWSPTIIRGDDREAVHIPNHQFSVNIVRNLTQKTHWRIKTHLAISHLDVSKIN 376

Query: 441 QISGDVKNMLTSNARVFLGRDVPYCFLSRV--ESSYAELTLGYNLKHMRKDELYSAEQDI 498
            I  D++ +L+ N ++   +     FL  +  E+    + +   +K  R +E    ++ +
Sbjct: 377 NIVADMRKVLSKNPQIEQQKIHRRVFLEDIDPENQALRILISCFVKTSRFEEYLCVKEAV 436

Query: 499 LLQAVQIIKNHGIALGS 515
           LL  + +I++HG  L +
Sbjct: 437 LLDLLTVIRHHGARLAT 453


>AT5G10490.3 | Symbols: MSL2 | MSCS-like 2 | chr5:3300376-3304550
           REVERSE LENGTH=671
          Length = 671

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 99/216 (45%), Gaps = 7/216 (3%)

Query: 315 GLFVIGIMALAEACGVAVQSIVTVGGIGGVASAFAARDILGNVFSGLSMQFSKPFSIGD- 373
            ++V  +    E  G + Q  +T GG+G V    A R+IL N  S + +  ++PF + + 
Sbjct: 242 AVWVAAVSLFMELLGFSTQKWLTAGGLGTVLITLAGREILTNFLSSVMIHATRPFVLNEW 301

Query: 374 ---TIKAGSIEGQVVEMGLTTTSLLSAEKFPVI-VPNSLFSSQVIVNKSRAEYRAIITKI 429
               I+   + G V  +G  + +++  E    I +PN  F+  V+ N ++  +  I T +
Sbjct: 302 IQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAIHIPNHKFTVNVVRNLTQKTHWRIKTHL 361

Query: 430 PLQIEDLSKIPQISGDVKNMLTSNARVFLGRDVPYCFLSRV--ESSYAELTLGYNLKHMR 487
            +   D++KI  I  D++ +L  N  V   R     FL  V  E+    + +   +K   
Sbjct: 362 AISHLDVNKINNIVADMRKVLAKNPMVEQQRLHRRVFLENVIPENQALSILISCFVKTSH 421

Query: 488 KDELYSAEQDILLQAVQIIKNHGIALGSTGQGMSTM 523
            +E    ++ ILL  +++I +H   L +  + +  M
Sbjct: 422 HEEYLGVKEAILLDLLRVISHHRARLATPIRTIRKM 457


>AT5G10490.1 | Symbols: MSL2 | MSCS-like 2 | chr5:3300376-3304005
           REVERSE LENGTH=673
          Length = 673

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 99/216 (45%), Gaps = 7/216 (3%)

Query: 315 GLFVIGIMALAEACGVAVQSIVTVGGIGGVASAFAARDILGNVFSGLSMQFSKPFSIGD- 373
            ++V  +    E  G + Q  +T GG+G V    A R+IL N  S + +  ++PF + + 
Sbjct: 244 AVWVAAVSLFMELLGFSTQKWLTAGGLGTVLITLAGREILTNFLSSVMIHATRPFVLNEW 303

Query: 374 ---TIKAGSIEGQVVEMGLTTTSLLSAEKFPVI-VPNSLFSSQVIVNKSRAEYRAIITKI 429
               I+   + G V  +G  + +++  E    I +PN  F+  V+ N ++  +  I T +
Sbjct: 304 IQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAIHIPNHKFTVNVVRNLTQKTHWRIKTHL 363

Query: 430 PLQIEDLSKIPQISGDVKNMLTSNARVFLGRDVPYCFLSRV--ESSYAELTLGYNLKHMR 487
            +   D++KI  I  D++ +L  N  V   R     FL  V  E+    + +   +K   
Sbjct: 364 AISHLDVNKINNIVADMRKVLAKNPMVEQQRLHRRVFLENVIPENQALSILISCFVKTSH 423

Query: 488 KDELYSAEQDILLQAVQIIKNHGIALGSTGQGMSTM 523
            +E    ++ ILL  +++I +H   L +  + +  M
Sbjct: 424 HEEYLGVKEAILLDLLRVISHHRARLATPIRTIRKM 459


>AT5G10490.2 | Symbols: MSL2 | MSCS-like 2 | chr5:3300376-3303836
           REVERSE LENGTH=645
          Length = 645

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 99/216 (45%), Gaps = 7/216 (3%)

Query: 315 GLFVIGIMALAEACGVAVQSIVTVGGIGGVASAFAARDILGNVFSGLSMQFSKPFSIGD- 373
            ++V  +    E  G + Q  +T GG+G V    A R+IL N  S + +  ++PF + + 
Sbjct: 216 AVWVAAVSLFMELLGFSTQKWLTAGGLGTVLITLAGREILTNFLSSVMIHATRPFVLNEW 275

Query: 374 ---TIKAGSIEGQVVEMGLTTTSLLSAEKFPVI-VPNSLFSSQVIVNKSRAEYRAIITKI 429
               I+   + G V  +G  + +++  E    I +PN  F+  V+ N ++  +  I T +
Sbjct: 276 IQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAIHIPNHKFTVNVVRNLTQKTHWRIKTHL 335

Query: 430 PLQIEDLSKIPQISGDVKNMLTSNARVFLGRDVPYCFLSRV--ESSYAELTLGYNLKHMR 487
            +   D++KI  I  D++ +L  N  V   R     FL  V  E+    + +   +K   
Sbjct: 336 AISHLDVNKINNIVADMRKVLAKNPMVEQQRLHRRVFLENVIPENQALSILISCFVKTSH 395

Query: 488 KDELYSAEQDILLQAVQIIKNHGIALGSTGQGMSTM 523
            +E    ++ ILL  +++I +H   L +  + +  M
Sbjct: 396 HEEYLGVKEAILLDLLRVISHHRARLATPIRTIRKM 431