Miyakogusa Predicted Gene

Lj4g3v0450230.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7M1N2_SOYBN 1230 59.4 70.1 (tr|K7M1N2) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G61140.3 815 55.8 66.0 | Symbols: EDA16 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related | chr1:22535038-22539756 REVERSE LENGTH=1122
Medicago Medtr2g012830.1 1158 56.8 67.7 | SNF2, helicase and zinc finger protein | HC | chr2:3311076-3321817 | 20130731
Soybean Glyma15g07590.1 1226 60.1 70.3  
LJGI gnl|LJGI|TC57286 317 83.2 83.2 similar to UniRef100_A7R3I3 Cluster: Chromosome undetermined scaffold_525, whole genome shotgun sequence; n=3; Vitis vinifera|Rep: Chromosome undetermined scaffold_525, whole genome shotgun sequence - Vitis vinifera (Grape), partial (37%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v0450230.1 length: 993 aa.
IPR000330 SNF2-related
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00176 SNF2_N 1.6e-70 327-693
IPR001650 Helicase, C-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 1.6e-11 858-935
HMMSmart SM00490 helicase 2.5e-17 852-935
ProfileScan PS51194 HELICASE_CTER 15.234 823-988
IPR001841 Zinc finger, RING-type
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00184 Ring 2e-06 732-770
ProfileScan PS50089 ZF_RING_2 10.719 732-771
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 2.7e-09 727-771
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 5.5e-29 320-595
ProfileScan PS51192 HELICASE_ATP_BIND_1 14.049 339-578
IPR017907 Zinc finger, RING-type, conserved site
PatternScan PS00518 ZF_RING_1 NA 747-756
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 4.1e-59 313-616
623-993
no_ID  
Gene3D G3DSA:3.40.50.300 no description 1.8e-17 510-579
820-964
HMMPanther PTHR10799 SWI/SNF-RELATED 2.2e-299 61-993
HMMPanther PTHR10799:SF133SNF2 DOMAIN-CONTAINING 2.2e-299 61-993
HMMPfam PF13923 zf-C3HC4_2 2.2e-09 731-772
Seg seg seg NA 937-954
superfamily SSF57850 RING/U-box 8.1e-12 727-788
Wolf-PSORT
Lj4g3v0450230.1	nucl 12, chlo 1, plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v0450230.1