Miyakogusa Predicted Gene
- Lj4g3v0450230.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v0450230.1 tr|G7INY7|G7INY7_MEDTR Helicase-like
transcription factor OS=Medicago truncatula GN=MTR_2g012830
PE=,57.54,0,ZF_RING_1,Zinc finger, RING-type, conserved site; no
description,Zinc finger, RING/FYVE/PHD-type; no,CUFF.47207.1
(2985 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC57286 similar to UniRef100_A7R3I3 Cluster: Chromosome... 317 2e-85
gnl|LJGI|AV409213 similar to UniRef100_A7R3I3 Cluster: Chromosom... 80 9e-14
>gnl|LJGI|TC57286 similar to UniRef100_A7R3I3 Cluster: Chromosome undetermined
scaffold_525, whole genome shotgun sequence; n=3; Vitis
vinifera|Rep: Chromosome undetermined scaffold_525, whole
genome shotgun sequence - Vitis vinifera (Grape), partial
(37%)
Length = 1656
Score = 317 bits (160), Expect = 2e-85
Identities = 406/488 (83%)
Strand = Plus / Plus
Query: 1859 cacttctggatggggaacctattatttccttgccgcctaaatttgtaaagctggaaaaag 1918
||||||| ||||| |||||||| ||||||||||| ||||||| ||| || || | ||||
Sbjct: 5 cacttcttgatggtgaacctatcatttccttgccacctaaatccgtagagttgaagaaag 64
Query: 1919 ttgatttttcaagggaggaacatggtttttatttaaaactagaggctgattcacgtgcac 1978
| || ||||||| | |||| | || ||| |||| || |||||||||||||||||||| |
Sbjct: 65 tggaattttcaaagcaggagcgtgatttctattcaaggctagaggctgattcacgtgctc 124
Query: 1979 agtttaagaaatatgctgatgctggaactgtcctgcaaaattatagcaacattttgcaga 2038
||||| || |||||||| ||||||||||||| |||||||||| ||||||| | ||
Sbjct: 125 agtttcaggaatatgctaatgctggaactgtgaagcaaaattatgtcaacattctattga 184
Query: 2039 tgcttctgcaccttagacaagcttgtgatcaccctctgcttgtcaagccatacaattcta 2098
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 185 tgcttctgcgccttagacaagcttgtgatcaccctctgcttgtcaagcattacaattcta 244
Query: 2099 gttctctatggagatcttcagttgagatggcagagaatcttccccaggaaaaacaaatat 2158
||||| |||| ||||||||||||||||||| |||| ||||| ||||| ||||| |||
Sbjct: 245 actctctgtggaaatcttcagttgagatggcaaagaagcttcctcaggagaaacagttat 304
Query: 2159 ctctttcgaaatgtttagaggcttccttggctctctgcgtcatttgtaatgatcctcctg 2218
| ||| ||||||||||||||||||||| || || | || || |||||||||||||
Sbjct: 305 cccttgtacgatgtttagaggcttccttggccctttgtggtatctgcaatgatcctcctg 364
Query: 2219 aagatgctgttgtttcagtttgcggtcatgttttctgtaaccagtgcatctatgaccgtc 2278
||||||| ||||| || || |||||||| ||||||||||| |||||||| | ||| | ||
Sbjct: 365 aagatgcagttgtctccgtatgcggtcacgttttctgtaatcagtgcatttgtgaacatc 424
Query: 2279 ttagcggcaatgacaagcagtgccctgctacaaattgcaaaggtcgactgaacacagctt 2338
||| ||| ||||||| ||||||||| |||| ||||||||| |||||||| || |||
Sbjct: 425 ttaccggtgatgacaatcagtgcccttctactaattgcaaaactcgactgagcatgactt 484
Query: 2339 cagtgttt 2346
||||||||
Sbjct: 485 cagtgttt 492
Score = 254 bits (128), Expect = 3e-66
Identities = 383/468 (81%)
Strand = Plus / Plus
Query: 2517 gaaagcgatagtcttcactcagtggacgagtatgctggatttactaggagtgtctcttaa 2576
|||||| ||||| || ||||||||||||| ||||| || || || | || || ||||||
Sbjct: 816 gaaagctatagtgttttctcagtggacgaggatgctagacttgcttgaagcgtgtcttaa 875
Query: 2577 gaattcttccattcagtatagaaggcttgatggaaatatgtcagttgctgcaagagacaa 2636
||||||||| ||| |||| ||||||||||| |||| ||||| ||| ||||||||| ||
Sbjct: 876 gaattcttcaattaagtacagaaggcttgacggaacgatgtcggttattgcaagagataa 935
Query: 2637 ggccattaaagattttaacgtccttcctgaggtttcagttatgattatgtgtttgaaggc 2696
|| | |||||||||||| || |||||||| || ||||||||||||| |||||||||
Sbjct: 936 agctgtcaaagattttaacacactccctgaggtatctgttatgattatgtctttgaaggc 995
Query: 2697 tgccagtcttggcctaaacttgattgtagcctctcatgttcttatgctagatttatggtg 2756
||| |||||||| || ||| || | | ||||| |||||||||||||||||| |||||||
Sbjct: 996 tgctagtcttggtctgaacatggtggcagcctgccatgttcttatgctagatctatggtg 1055
Query: 2757 gaatcctacaactgaagatcaagcaatagatagagcacatcgaattgggcagactcgtcc 2816
|||||| || |||||||||||||| ||||| ||||| ||||| ||||| |||||||||||
Sbjct: 1056 gaatcccaccactgaagatcaagcgatagacagagctcatcgcattggacagactcgtcc 1115
Query: 2817 tgtcactgttgtgcgattaactgtgagagatacagttgaagatcgtattcttgcactgca 2876
||| || ||| |||| |||||||| || ||||| |||||||| |||||| | || || ||
Sbjct: 1116 tgttacagttttgcggttaactgtaagggatacggttgaagaccgtattttagctctaca 1175
Query: 2877 ggaaaagaaacgaaaggtggttgcacatgcatttggggagaatgatactggtggtcgtca 2936
| ||||||| |||||| ||||| || ||||||||| ||| ||| | |||| || ||||
Sbjct: 1176 gcaaaagaagcgaaagatggtttcatctgcatttggagaggatggaagtggtagtggtca 1235
Query: 2937 gagtcaacttactgtggatgaattgaaatgtttgttcaagatatgatt 2984
|| | ||||| |||||||| ||||||| ||||||| ||| |||||
Sbjct: 1236 aagccgtcttacagtggatgatttgaaatacttgttcatgatgtgatt 1283
>gnl|LJGI|AV409213 similar to UniRef100_A7R3I3 Cluster: Chromosome undetermined
scaffold_525, whole genome shotgun sequence; n=3; Vitis
vinifera|Rep: Chromosome undetermined scaffold_525,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (4%)
Length = 356
Score = 79.8 bits (40), Expect = 9e-14
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 892 atattacaagttgctttgcaggttttgtctcagccaaaatcagaagttagcttaccagat 951
||||||| ||||||||||||| ||| |||||||| || ||||||||||| |||||||
Sbjct: 269 atattacgtgttgctttgcaggatttatctcagccgaagtcagaagttagtccaccagat 328
Query: 952 gggttgttggcagttcctct 971
|||||| |||||||||||||
Sbjct: 329 gggttgctggcagttcctct 348