Miyakogusa Predicted Gene
- Lj4g3v0450230.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0450230.1 tr|G7INY7|G7INY7_MEDTR Helicase-like
transcription factor OS=Medicago truncatula GN=MTR_2g012830
PE=,57.54,0,ZF_RING_1,Zinc finger, RING-type, conserved site; no
description,Zinc finger, RING/FYVE/PHD-type; no,CUFF.47207.1
(993 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein / ... 815 0.0
AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein / ... 815 0.0
AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helic... 773 0.0
AT1G11100.2 | Symbols: | SNF2 domain-containing protein / helic... 766 0.0
AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helic... 733 0.0
AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helic... 728 0.0
AT1G61140.2 | Symbols: EDA16 | SNF2 domain-containing protein / ... 541 e-154
AT3G16600.1 | Symbols: | SNF2 domain-containing protein / helic... 513 e-145
AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein | chr5:75... 348 1e-95
AT5G43530.1 | Symbols: | Helicase protein with RING/U-box domai... 337 2e-92
AT1G05120.1 | Symbols: | Helicase protein with RING/U-box domai... 314 2e-85
AT5G05130.1 | Symbols: | DNA/RNA helicase protein | chr5:151217... 306 7e-83
AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosph... 258 1e-68
AT2G40770.1 | Symbols: | zinc ion binding;DNA binding;helicases... 119 9e-27
AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containi... 101 2e-21
AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA ... 98 4e-20
AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic ac... 97 5e-20
AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containi... 87 8e-17
AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator | chr3:... 84 4e-16
AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORW... 84 7e-16
AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 | chr2:8129... 83 8e-16
AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helic... 82 1e-15
AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putat... 82 1e-15
AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putat... 82 2e-15
AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog | chr3:21... 82 2e-15
AT3G57300.2 | Symbols: INO80 | INO80 ortholog | chr3:21199612-21... 82 2e-15
AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 | chr2:5544... 81 3e-15
AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helic... 80 1e-14
AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 | chr5:25... 79 2e-14
AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re... 79 2e-14
AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re... 79 2e-14
AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin re... 79 2e-14
AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 | chr... 78 2e-14
AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDD... 78 4e-14
AT5G19310.1 | Symbols: | Homeotic gene regulator | chr5:6498906... 77 4e-14
AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 | c... 77 8e-14
AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 | c... 77 8e-14
AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 75 2e-13
AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 75 2e-13
AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 75 2e-13
AT1G48310.1 | Symbols: CHR18, CHA18 | chromatin remodeling facto... 74 6e-13
AT1G08600.1 | Symbols: ATRX, CHR20 | P-loop containing nucleosid... 67 6e-11
AT1G08600.2 | Symbols: ATRX | P-loop containing nucleoside triph... 67 6e-11
AT1G08600.4 | Symbols: ATRX | P-loop containing nucleoside triph... 67 6e-11
AT1G08600.3 | Symbols: ATRX | P-loop containing nucleoside triph... 67 6e-11
AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 ... 67 7e-11
AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 65 3e-10
AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 65 3e-10
AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 65 3e-10
AT1G05490.1 | Symbols: chr31 | chromatin remodeling 31 | chr1:16... 64 4e-10
AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 | chr3:6652799-6... 63 1e-09
AT3G24340.1 | Symbols: chr40 | chromatin remodeling 40 | chr3:88... 63 1e-09
AT2G16390.1 | Symbols: DRD1, CHR35, DMS1 | SNF2 domain-containin... 60 1e-08
AT2G21450.1 | Symbols: CHR34 | chromatin remodeling 34 | chr2:91... 59 1e-08
AT5G07810.1 | Symbols: | SNF2 domain-containing protein / helic... 57 5e-08
>AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22535038-22539756 REVERSE
LENGTH=1122
Length = 1122
Score = 815 bits (2106), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/796 (55%), Positives = 525/796 (65%), Gaps = 97/796 (12%)
Query: 271 ISQSSKQVNSQLNMVGSNRRKACDERNILQVALQVLSQPKSEVSLPDGLLAVPLLRHQRI 330
+S V+ N G + ++ E I Q ALQ L+QP SE LPDG+L VPLLRHQRI
Sbjct: 345 VSSEYSTVSHNFNQSGGLKLQSNKENMIFQAALQDLTQPNSEAILPDGVLTVPLLRHQRI 404
Query: 331 ALSWMVQKETSCSYCSGGILADDQGLGKTVTTIALILKQRPPALTVCPNVQKGEL----- 385
ALSWM QKETS CSGGILADDQGLGKTV+TIALILK+R C K E+
Sbjct: 405 ALSWMAQKETSGFPCSGGILADDQGLGKTVSTIALILKERSKPAQACEESTKKEIFDLES 464
Query: 386 -----------------EASNLSMNLLEQEKGG---------PSAGTLIVCPTSVLRQWA 419
E S L N E + GG P+AGTL+VCPTSV+RQWA
Sbjct: 465 ETGECAPLKPSGRSKHFEHSQLLSN--ENKVGGDSVGKVTGRPAAGTLVVCPTSVMRQWA 522
Query: 420 EELQNKVTSQANLSVLVYHGRNRTKDPYEVAKYDVVLTTYAIVSLEVPKQPIVNKDGEEK 479
+EL KVTS+ANLSVLVYHG +RTKDP+E+AKYDVV+TT++IVS+EVPKQP+V+ + EEK
Sbjct: 523 DELHKKVTSEANLSVLVYHGSSRTKDPHELAKYDVVVTTFSIVSMEVPKQPLVDDEDEEK 582
Query: 480 GIFEDYALPS------RKRKYPSNSDMSGKKELDSTMLEAVSQPLAKVAWFRVVLDEAQS 533
D + +KRKYP +S G K +E +S PLAKV+WFRVVLDEAQS
Sbjct: 583 DGVHDGGTAATGFCSNKKRKYPPDSKKKGSK---KKKVEFLSGPLAKVSWFRVVLDEAQS 639
Query: 534 IKNRKTQFASACSDLHAKRRWCLSGTPIQNSIDDLYSYFKFLRYSPYDVYPSFCATIKIP 593
IKN KTQ A AC L AKRRWCLSGTPIQNSIDDLYSYF+FL+Y PY Y FC+TIK P
Sbjct: 640 IKNYKTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYSSYVLFCSTIKNP 699
Query: 594 ISRSPTTGYRKLQAVLNTIMLRRTKGTLLDGEPIISLPPKFVKLEKVDFSREEHGFYLKL 653
I+R+P GY+KLQA+L T+MLRRTKG+LLDG+PIISLPPK ++L KVDF+ EE FY KL
Sbjct: 700 ITRNPVKGYQKLQAILKTVMLRRTKGSLLDGKPIISLPPKSIELRKVDFTVEERDFYSKL 759
Query: 654 EADSRAQFKKYADAGTVLQNYSNILQMLLHLRQACDHPLLVKPYNSSSLWRSSVEMAENL 713
EA+SR QF++YA+AGTV QNY NIL MLL LRQACDHPLLV S + W SSV +A
Sbjct: 760 EAESRTQFREYAEAGTVKQNYVNILLMLLRLRQACDHPLLVNGEYSFT-WESSVGLA--- 815
Query: 714 PQEKQISLSKCLEASLALCVICNDPPEDAVVSVCGHVFCNQCIYDRLSGNDKQCPATNCK 773
+KQI +ASLA+C ICND PEDAV SVCGHVFC QCIY+RL+G+ CP NC
Sbjct: 816 --KKQIQ----SDASLAICGICNDAPEDAVASVCGHVFCKQCIYERLTGDSNHCPFANCN 869
Query: 774 GRLNTASVFSNATLSNCFSN-QDCDNSPCCSGCEVEESEPWSRSQSYESSKMKAALKVLK 832
RL +S+ S L + + Q+ S S C E+ Y SSK+KAAL++L+
Sbjct: 870 VRLTISSLSSKTRLDDAMPDMQERATSNSLSPCSDED-------LPYGSSKIKAALEILQ 922
Query: 833 S-------------------------------------STVEGEKAIVFTQWTSMLDLLG 855
S V GEKAIVF+QWT ML+LL
Sbjct: 923 SLPKAHDLTDSNQISENREYSGLSITPVKNEGMSVDVPIKVAGEKAIVFSQWTKMLNLLE 982
Query: 856 VSLKNSSIQYRRLDGNMSVAARDKAIKDFNVLPEVSVMIMCLKAASLGLNLIVASHVLML 915
SL +S IQYRRLDG MSVAARDKA++DFN LPEV+VMIM LKAASLGLN++ A HVLML
Sbjct: 983 ASLVSSHIQYRRLDGTMSVAARDKAVQDFNTLPEVTVMIMSLKAASLGLNMVAACHVLML 1042
Query: 916 DLWWNPTTEDQAIDRAHRIGQXXXXXXXXXXXXXXXXXXILALQEKKRKVVAHAFGENDT 975
DLWWNPTTEDQAIDRAHRIGQ ILALQ+KKR +VA AFGE++
Sbjct: 1043 DLWWNPTTEDQAIDRAHRIGQTRPVTVVRFTVKDTVEDRILALQQKKRMMVASAFGEDEK 1102
Query: 976 GGRQSQLTVDELKCLF 991
G RQS LTV++L LF
Sbjct: 1103 GSRQSHLTVEDLSYLF 1118
>AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22535038-22540610 REVERSE
LENGTH=1280
Length = 1280
Score = 815 bits (2106), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/796 (55%), Positives = 525/796 (65%), Gaps = 97/796 (12%)
Query: 271 ISQSSKQVNSQLNMVGSNRRKACDERNILQVALQVLSQPKSEVSLPDGLLAVPLLRHQRI 330
+S V+ N G + ++ E I Q ALQ L+QP SE LPDG+L VPLLRHQRI
Sbjct: 503 VSSEYSTVSHNFNQSGGLKLQSNKENMIFQAALQDLTQPNSEAILPDGVLTVPLLRHQRI 562
Query: 331 ALSWMVQKETSCSYCSGGILADDQGLGKTVTTIALILKQRPPALTVCPNVQKGEL----- 385
ALSWM QKETS CSGGILADDQGLGKTV+TIALILK+R C K E+
Sbjct: 563 ALSWMAQKETSGFPCSGGILADDQGLGKTVSTIALILKERSKPAQACEESTKKEIFDLES 622
Query: 386 -----------------EASNLSMNLLEQEKGG---------PSAGTLIVCPTSVLRQWA 419
E S L N E + GG P+AGTL+VCPTSV+RQWA
Sbjct: 623 ETGECAPLKPSGRSKHFEHSQLLSN--ENKVGGDSVGKVTGRPAAGTLVVCPTSVMRQWA 680
Query: 420 EELQNKVTSQANLSVLVYHGRNRTKDPYEVAKYDVVLTTYAIVSLEVPKQPIVNKDGEEK 479
+EL KVTS+ANLSVLVYHG +RTKDP+E+AKYDVV+TT++IVS+EVPKQP+V+ + EEK
Sbjct: 681 DELHKKVTSEANLSVLVYHGSSRTKDPHELAKYDVVVTTFSIVSMEVPKQPLVDDEDEEK 740
Query: 480 GIFEDYALPS------RKRKYPSNSDMSGKKELDSTMLEAVSQPLAKVAWFRVVLDEAQS 533
D + +KRKYP +S G K +E +S PLAKV+WFRVVLDEAQS
Sbjct: 741 DGVHDGGTAATGFCSNKKRKYPPDSKKKGSK---KKKVEFLSGPLAKVSWFRVVLDEAQS 797
Query: 534 IKNRKTQFASACSDLHAKRRWCLSGTPIQNSIDDLYSYFKFLRYSPYDVYPSFCATIKIP 593
IKN KTQ A AC L AKRRWCLSGTPIQNSIDDLYSYF+FL+Y PY Y FC+TIK P
Sbjct: 798 IKNYKTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYSSYVLFCSTIKNP 857
Query: 594 ISRSPTTGYRKLQAVLNTIMLRRTKGTLLDGEPIISLPPKFVKLEKVDFSREEHGFYLKL 653
I+R+P GY+KLQA+L T+MLRRTKG+LLDG+PIISLPPK ++L KVDF+ EE FY KL
Sbjct: 858 ITRNPVKGYQKLQAILKTVMLRRTKGSLLDGKPIISLPPKSIELRKVDFTVEERDFYSKL 917
Query: 654 EADSRAQFKKYADAGTVLQNYSNILQMLLHLRQACDHPLLVKPYNSSSLWRSSVEMAENL 713
EA+SR QF++YA+AGTV QNY NIL MLL LRQACDHPLLV S + W SSV +A
Sbjct: 918 EAESRTQFREYAEAGTVKQNYVNILLMLLRLRQACDHPLLVNGEYSFT-WESSVGLA--- 973
Query: 714 PQEKQISLSKCLEASLALCVICNDPPEDAVVSVCGHVFCNQCIYDRLSGNDKQCPATNCK 773
+KQI +ASLA+C ICND PEDAV SVCGHVFC QCIY+RL+G+ CP NC
Sbjct: 974 --KKQIQ----SDASLAICGICNDAPEDAVASVCGHVFCKQCIYERLTGDSNHCPFANCN 1027
Query: 774 GRLNTASVFSNATLSNCFSN-QDCDNSPCCSGCEVEESEPWSRSQSYESSKMKAALKVLK 832
RL +S+ S L + + Q+ S S C E+ Y SSK+KAAL++L+
Sbjct: 1028 VRLTISSLSSKTRLDDAMPDMQERATSNSLSPCSDED-------LPYGSSKIKAALEILQ 1080
Query: 833 S-------------------------------------STVEGEKAIVFTQWTSMLDLLG 855
S V GEKAIVF+QWT ML+LL
Sbjct: 1081 SLPKAHDLTDSNQISENREYSGLSITPVKNEGMSVDVPIKVAGEKAIVFSQWTKMLNLLE 1140
Query: 856 VSLKNSSIQYRRLDGNMSVAARDKAIKDFNVLPEVSVMIMCLKAASLGLNLIVASHVLML 915
SL +S IQYRRLDG MSVAARDKA++DFN LPEV+VMIM LKAASLGLN++ A HVLML
Sbjct: 1141 ASLVSSHIQYRRLDGTMSVAARDKAVQDFNTLPEVTVMIMSLKAASLGLNMVAACHVLML 1200
Query: 916 DLWWNPTTEDQAIDRAHRIGQXXXXXXXXXXXXXXXXXXILALQEKKRKVVAHAFGENDT 975
DLWWNPTTEDQAIDRAHRIGQ ILALQ+KKR +VA AFGE++
Sbjct: 1201 DLWWNPTTEDQAIDRAHRIGQTRPVTVVRFTVKDTVEDRILALQQKKRMMVASAFGEDEK 1260
Query: 976 GGRQSQLTVDELKCLF 991
G RQS LTV++L LF
Sbjct: 1261 GSRQSHLTVEDLSYLF 1276
>AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr1:18672828-18677365 FORWARD LENGTH=981
Length = 981
Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/802 (51%), Positives = 514/802 (64%), Gaps = 96/802 (11%)
Query: 283 NMVGSNRRKACDERNILQVALQVLSQPKSEVSLPDGLLAVPLLRHQRIALSWMVQKETSC 342
N +G R DER I Q ALQ L+QPKSEV LP GLL+VPL++HQ+IAL+WM QKET+
Sbjct: 185 NGIGEERNSENDERLIYQAALQELNQPKSEVDLPAGLLSVPLMKHQKIALAWMFQKETNS 244
Query: 343 SYCSGGILADDQGLGKTVTTIALILKQRPPALTVCPNVQKGELEASNL-----SMNLLEQ 397
+C GGILADDQGLGKTV+TIALILKQ A N E EA +L S N E+
Sbjct: 245 LHCMGGILADDQGLGKTVSTIALILKQMHEAKLKSKNSGNQEAEALDLDADDESENAFEK 304
Query: 398 --------------------------------EKGGPSAGTLIVCPTSVLRQWAEELQNK 425
+ P+AGTLIVCP SV+RQWA EL K
Sbjct: 305 PESKASNGSGVNGDSGIKKAKGEEASTSTRKFNRKRPAAGTLIVCPASVVRQWARELDEK 364
Query: 426 VTSQANLSVLVYHGRNRTKDPYEVAKYDVVLTTYAIVSLEVPKQPIVNKDGEEKGIFEDY 485
VT +A LSVL+YHG NRTKDP E+AKYDVV+TTYAIVS EVPKQP+V+ D ++ E Y
Sbjct: 365 VTDEAKLSVLIYHGGNRTKDPIELAKYDVVMTTYAIVSNEVPKQPLVDDDENDEKNSEKY 424
Query: 486 ALPS-----RKRKYPSNSDMSGKKELDSTMLEAVSQP----LAKVAWFRVVLDEAQSIKN 536
L S +KRK + KK+ + S P LAKV WFRVVLDEAQ+IKN
Sbjct: 425 GLASGFSINKKRKNVVGTTKKSKKKKGNNNAGDSSDPDSGTLAKVGWFRVVLDEAQTIKN 484
Query: 537 RKTQFASACSDLHAKRRWCLSGTPIQNSIDDLYSYFKFLRYSPYDVYPSFCATIKIPISR 596
+TQ A AC L AKRRWCLSGTPIQN+IDDLYSYF+FL+Y PY VY SFC IK PISR
Sbjct: 485 HRTQVARACCGLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFCHQIKGPISR 544
Query: 597 SPTTGYRKLQAVLNTIMLRRTKGTLLDGEPIISLPPKFVKLEKVDFSREEHGFYLKLEAD 656
+ GY+KLQAVL IMLRRTKGTLLDG+PII+LPPK + L +VDFS EE FY+KLE+D
Sbjct: 545 NSLQGYKKLQAVLRAIMLRRTKGTLLDGQPIINLPPKTINLSQVDFSVEERSFYVKLESD 604
Query: 657 SRAQFKKYADAGTVLQNYSNILQMLLHLRQACDHPLLVKPYNSSSLWRSSVEMAENLPQE 716
SR+QFK YA AGT+ QNY+NIL MLL LRQACDHP LVK YNS S+ + S E + LP+E
Sbjct: 605 SRSQFKAYAAAGTLNQNYANILLMLLRLRQACDHPQLVKRYNSDSVGKVSEEAVKKLPKE 664
Query: 717 KQISLSKCLEASLALCVICNDPPEDAVVSVCGHVFCNQCIYDRLSGNDKQCPATNCKGRL 776
+SL LE+S +C +C+DPPED VV++CGH+FC QC+ D ++G++ CPA C+ +L
Sbjct: 665 DLVSLLSRLESS-PICCVCHDPPEDPVVTLCGHIFCYQCVSDYITGDEDTCPAPRCREQL 723
Query: 777 NTASVFSNATLSNCFSNQDCDNSPCCSGCEVEESEPWSRSQSYESSKMKAALKVLKS--- 833
VFS +TL +C + D+ C S + + ++ + SSK+KA L +L+S
Sbjct: 724 AHDVVFSKSTLRSCVA----DDLGCSSSEDNSHDKSVFQNGEFSSSKIKAVLDILQSLSN 779
Query: 834 -----STVEGE-------------------------------------KAIVFTQWTSML 851
ST G+ K I+F+QWT ML
Sbjct: 780 QGTSNSTQNGQMASSSQQPNDDDDDDDDDVTIVEKTSLKSTPSNGGPIKTIIFSQWTGML 839
Query: 852 DLLGVSLKNSSIQYRRLDGNMSVAARDKAIKDFNVLPEVSVMIMCLKAASLGLNLIVASH 911
DL+ +SL +SI++RRLDG MS+ ARD+A+K+F+ P+V VMIM LKA +LGLN+I A H
Sbjct: 840 DLVELSLIENSIEFRRLDGTMSLIARDRAVKEFSNDPDVKVMIMSLKAGNLGLNMIAACH 899
Query: 912 VLMLDLWWNPTTEDQAIDRAHRIGQXXXXXXXXXXXXXXXXXXILALQEKKRKVVAHAFG 971
V++LDLWWNPTTEDQAIDRAHRIGQ ILALQE+KRK+VA AFG
Sbjct: 900 VILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKNTVEDRILALQEEKRKMVASAFG 959
Query: 972 ENDTGGRQSQLTVDELKCLFKI 993
E+ G ++LTVD+LK LF +
Sbjct: 960 EDHGGSSATRLTVDDLKYLFMV 981
>AT1G11100.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related |
chr1:3703934-3709302 REVERSE LENGTH=1269
Length = 1269
Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/761 (55%), Positives = 507/761 (66%), Gaps = 77/761 (10%)
Query: 299 LQVALQVLSQPKSEVSLPDGLLAVPLLRHQRIALSWMVQKETSCSYCSGGILADDQGLGK 358
LQ LSQ SE S PDG+LAV LLRHQRIALSWM QKETS + C GGILADDQGLGK
Sbjct: 516 FHADLQDLSQHSSEASPPDGVLAVSLLRHQRIALSWMSQKETSGNPCFGGILADDQGLGK 575
Query: 359 TVTTIALILKQR-PPALTVCPNVQKGELEASNLSMNLLEQEK----------GGPSAGTL 407
TV+TIALIL +R P L + + G S+ S + + K G P+AGTL
Sbjct: 576 TVSTIALILTERSTPYLPCEEDSKNGGCNQSDHSQVVFNENKVVEDSLCKMRGRPAAGTL 635
Query: 408 IVCPTSVLRQWAEELQNKVTSQANLSVLVYHGRNRTKDPYEVAKYDVVLTTYAIVSLEVP 467
IVCPTS++RQWA+EL+ KVT +A+LSVLVYHG +RTKDP+E+AKYDVV+TTY++VS+EVP
Sbjct: 636 IVCPTSLMRQWADELRKKVTLEAHLSVLVYHGCSRTKDPHELAKYDVVITTYSLVSVEVP 695
Query: 468 KQPIVNKDGEEKGI----FEDYALPSRKRKYPSNSDMSG---KKELDSTMLEAVSQPLAK 520
KQP D E+ GI E S K+ P NS G +K +D +E +S PLA+
Sbjct: 696 KQPRDRADEEKGGIHDGGVESVGFGSNKKDLP-NSQKKGTKKRKHMDCEPVEFLSGPLAQ 754
Query: 521 VAWFRVVLDEAQSIKNRKTQFASACSDLHAKRRWCLSGTPIQNSIDDLYSYFKFLRYSPY 580
V+WFRVVLDEAQSIKN KTQ + ACS LHAKRRWCLSGTPIQNSI DLYSYF+FL+Y PY
Sbjct: 755 VSWFRVVLDEAQSIKNYKTQASIACSGLHAKRRWCLSGTPIQNSIADLYSYFRFLKYDPY 814
Query: 581 DVYPSFCATIKIPISRSPTTGYRKLQAVLNTIMLRRTKGTLLDGEPIISLPPKFVKLEKV 640
Y +FC TIK PIS P GY+ LQA+L +MLRRTK TLLDG+P+ISLPPK ++L +V
Sbjct: 815 SSYQTFCETIKNPISSYPGEGYKTLQAILKKVMLRRTKDTLLDGKPVISLPPKSIELRRV 874
Query: 641 DFSREEHGFYLKLEADSRAQFKKYADAGTVLQNYSNILQMLLHLRQACDHPLLVKPYNSS 700
DF++EE FY KLE DSR QFK+YA+AGTV QNY NIL MLL LRQAC HPLLV SS
Sbjct: 875 DFTKEERDFYSKLECDSRDQFKEYAEAGTVKQNYVNILLMLLRLRQACGHPLLV----SS 930
Query: 701 SLWRSSVEMAENLPQEKQISLSKCLEASLALCVICNDPPEDAVVSVCGHVFCNQCIYDRL 760
W SS EM + LP EK L LEASLA+C ICN P+DAVVS+CGHVFCNQCI + L
Sbjct: 931 LSWSSSAEMVKKLPYEKLTFLLHRLEASLAICGICNVAPKDAVVSLCGHVFCNQCICECL 990
Query: 761 SGNDKQCPATNCKGRLNTASVFSNATLSNCFSNQDCDNSPCCSGCEVEESEPWSRSQSYE 820
+ ++ QCP + CK L +S+FS TL N + ++P C+ S+P + E
Sbjct: 991 TRDNNQCPLSYCKVGLEISSLFSRETLENAMLDLHKLDAP----CDRTTSDPVGSGEPCE 1046
Query: 821 -----SSKMKAALKVLKSST---------------------------------------- 835
SSK+KAAL +L+S +
Sbjct: 1047 NLPCGSSKIKAALDILQSLSRPQSPATVMNDVNQSSENGENNQQLDKSFSLPATPAKSSV 1106
Query: 836 -----VEGEKAIVFTQWTSMLDLLGVSLKNSSIQYRRLDGNMSVAARDKAIKDFNVLPEV 890
V GEKAIVFTQWT MLDLL LK+S IQYRR DG M+V ARD A++DFN LP+V
Sbjct: 1107 GGVVNVAGEKAIVFTQWTKMLDLLEAGLKSSGIQYRRFDGKMTVPARDAAVQDFNTLPDV 1166
Query: 891 SVMIMCLKAASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQXXXXXXXXXXXXXX 950
SVMIM LKAASLGLN++ A HV+MLDLWWNPTTEDQAIDRAHRIGQ
Sbjct: 1167 SVMIMSLKAASLGLNMVAACHVIMLDLWWNPTTEDQAIDRAHRIGQTRPVKVVRFTVKDT 1226
Query: 951 XXXXILALQEKKRKVVAHAFGENDTGGRQSQLTVDELKCLF 991
ILALQ+KKRK+VA AFGE++ G R+S L+V++L LF
Sbjct: 1227 VEDRILALQQKKRKMVASAFGEHENGSRESHLSVEDLNYLF 1267
>AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related |
chr1:3703934-3709302 REVERSE LENGTH=1226
Length = 1226
Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/754 (54%), Positives = 489/754 (64%), Gaps = 107/754 (14%)
Query: 299 LQVALQVLSQPKSEVSLPDGLLAVPLLRHQRIALSWMVQKETSCSYCSGGILADDQGLGK 358
LQ LSQ SE S PDG+LAV LLRHQRIALSWM QKETS + C GGILADDQGLGK
Sbjct: 517 FHADLQDLSQHSSEASPPDGVLAVSLLRHQRIALSWMSQKETSGNPCFGGILADDQGLGK 576
Query: 359 TVTTIALILKQR-PPALTVCPNVQKGELEASNLSMNLLEQEK----------GGPSAGTL 407
TV+TIALIL +R P L + + G S+ S + + K G P+AGTL
Sbjct: 577 TVSTIALILTERSTPYLPCEEDSKNGGCNQSDHSQVVFNENKVVEDSLCKMRGRPAAGTL 636
Query: 408 IVCPTSVLRQWAEELQNKVTSQANLSVLVYHGRNRTKDPYEVAKYDVVLTTYAIVSLEVP 467
IVCPTS++RQWA+EL+ KVT +A+LSVLVYHG +RTKDP+E+AKYDVV+TTY++VS
Sbjct: 637 IVCPTSLMRQWADELRKKVTLEAHLSVLVYHGCSRTKDPHELAKYDVVITTYSLVS---- 692
Query: 468 KQPIVNKDGEEKGIFEDYALPSRKRKYPSNSDMSGKKELDSTMLEAVSQPLAKVAWFRVV 527
KRK+ +D +E +S PLA+V+WFRVV
Sbjct: 693 -----------------------KRKH-----------MDCEPVEFLSGPLAQVSWFRVV 718
Query: 528 LDEAQSIKNRKTQFASACSDLHAKRRWCLSGTPIQNSIDDLYSYFKFLRYSPYDVYPSFC 587
LDEAQSIKN KTQ + ACS LHAKRRWCLSGTPIQNSI DLYSYF+FL+Y PY Y +FC
Sbjct: 719 LDEAQSIKNYKTQASIACSGLHAKRRWCLSGTPIQNSIADLYSYFRFLKYDPYSSYQTFC 778
Query: 588 ATIKIPISRSPTTGYRKLQAVLNTIMLRRTKGTLLDGEPIISLPPKFVKLEKVDFSREEH 647
TIK PIS P GY+ LQA+L +MLRRTK TLLDG+P+ISLPPK ++L +VDF++EE
Sbjct: 779 ETIKNPISSYPGEGYKTLQAILKKVMLRRTKDTLLDGKPVISLPPKSIELRRVDFTKEER 838
Query: 648 GFYLKLEADSRAQFKKYADAGTVLQNYSNILQMLLHLRQACDHPLLVKPYNSSSLWRSSV 707
FY KLE DSR QFK+YA+AGTV QNY NIL MLL LRQAC HPLLV SS W SS
Sbjct: 839 DFYSKLECDSRDQFKEYAEAGTVKQNYVNILLMLLRLRQACGHPLLV----SSLSWSSSA 894
Query: 708 EMAENLPQEKQISLSKCLEASLALCVICNDPPEDAVVSVCGHVFCNQCIYDRLSGNDKQC 767
EM + LP EK L LEASLA+C ICN P+DAVVS+CGHVFCNQCI + L+ ++ QC
Sbjct: 895 EMVKKLPYEKLTFLLHRLEASLAICGICNVAPKDAVVSLCGHVFCNQCICECLTRDNNQC 954
Query: 768 PATNCKGRLNTASVFSNATLSNCFSNQDCDNSPCCSGCEVEESEPWSRSQSYE-----SS 822
P + CK L +S+FS TL N + ++P C+ S+P + E SS
Sbjct: 955 PLSYCKVGLEISSLFSRETLENAMLDLHKLDAP----CDRTTSDPVGSGEPCENLPCGSS 1010
Query: 823 KMKAALKVLKSST---------------------------------------------VE 837
K+KAAL +L+S + V
Sbjct: 1011 KIKAALDILQSLSRPQSPATVMNDVNQSSENGENNQQLDKSFSLPATPAKSSVGGVVNVA 1070
Query: 838 GEKAIVFTQWTSMLDLLGVSLKNSSIQYRRLDGNMSVAARDKAIKDFNVLPEVSVMIMCL 897
GEKAIVFTQWT MLDLL LK+S IQYRR DG M+V ARD A++DFN LP+VSVMIM L
Sbjct: 1071 GEKAIVFTQWTKMLDLLEAGLKSSGIQYRRFDGKMTVPARDAAVQDFNTLPDVSVMIMSL 1130
Query: 898 KAASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQXXXXXXXXXXXXXXXXXXILA 957
KAASLGLN++ A HV+MLDLWWNPTTEDQAIDRAHRIGQ ILA
Sbjct: 1131 KAASLGLNMVAACHVIMLDLWWNPTTEDQAIDRAHRIGQTRPVKVVRFTVKDTVEDRILA 1190
Query: 958 LQEKKRKVVAHAFGENDTGGRQSQLTVDELKCLF 991
LQ+KKRK+VA AFGE++ G R+S L+V++L LF
Sbjct: 1191 LQQKKRKMVASAFGEHENGSRESHLSVEDLNYLF 1224
>AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related |
chr3:6971352-6976340 FORWARD LENGTH=1047
Length = 1047
Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/811 (48%), Positives = 502/811 (61%), Gaps = 109/811 (13%)
Query: 286 GSNRRKACDERNILQVALQVLSQPKSEVSLPDGLLAVPLLRHQRIALSWMVQKETSCSYC 345
G +R DER + Q ALQVL+QP +E LP G L+VPL+RHQ+IAL+WM QKETS C
Sbjct: 243 GEDRNPDNDERLVYQAALQVLNQPMTESDLPPGTLSVPLMRHQKIALAWMFQKETSSFNC 302
Query: 346 SGGILADDQGLGKTVTTIALILKQR----------------------------------- 370
GGILADDQGLGKTV+TIALILKQ+
Sbjct: 303 PGGILADDQGLGKTVSTIALILKQKIVSQLKSESSCKQETEALVLDADDESDNAKHESGS 362
Query: 371 --PPALTVCPN------------------VQKGELEASNLSMNLLEQEKGGPSAGTLIVC 410
P L V N ++K E E +N S + ++ P+AGTLIVC
Sbjct: 363 HVKPELKVSSNSETSVLSACGNDENDSSDMEKAEDEEANSSTRAFQWKR--PAAGTLIVC 420
Query: 411 PTSVLRQWAEELQNKVTSQANLSVLVYHGRNRTKDPYEVAKYDVVLTTYAIVSLEVPKQP 470
P SV+RQWA EL KV+ ++ LSVLVYHG NRTKDP E+A+YDVV+TTYAIV+ E P +
Sbjct: 421 PASVVRQWARELDEKVSEESKLSVLVYHGSNRTKDPNELAEYDVVVTTYAIVTNEAPNKF 480
Query: 471 IVNKDGEEKGIFEDYALPS-----RKRKY----PSNSDMSGKKELDSTMLEAVSQPLAKV 521
+V++D ++ + Y L S +KRK S G+K + T E PL KV
Sbjct: 481 LVDEDENDEKNTDRYGLASGFSNNKKRKVVVGASKKSKRRGRKSTNDTSSEPDCGPLGKV 540
Query: 522 AWFRVVLDEAQSIKNRKTQFASACSDLHAKRRWCLSGTPIQNSIDDLYSYFKFLRYSPYD 581
WFR+VLDEAQ+IKN +TQ A +C L AKRRWCLSGTPIQN+IDDLYSYF+FLRY PY
Sbjct: 541 GWFRIVLDEAQTIKNYRTQMARSCCTLRAKRRWCLSGTPIQNTIDDLYSYFRFLRYDPYA 600
Query: 582 VYPSFCATIKIPISRSPTTGYRKLQAVLNTIMLRRTKGTLLDGEPIISLPPKFVKLEKVD 641
VY SF +TIK+PISR+ GY+KLQAVL IMLRRTKGTLLDG+PII+LPPK V L +VD
Sbjct: 601 VYKSFYSTIKVPISRNSCQGYKKLQAVLRAIMLRRTKGTLLDGKPIINLPPKVVNLSQVD 660
Query: 642 FSREEHGFYLKLEADSRAQFKKYADAGTVLQNYSNILQMLLHLRQACDHPLLVKPYNSSS 701
FS E FY KLEADSR+QFK YADAGT+ QNY+NIL +LL LRQACDHP LVK YNS
Sbjct: 661 FSVAERSFYKKLEADSRSQFKAYADAGTLSQNYANILLLLLRLRQACDHPQLVKRYNSDP 720
Query: 702 LWRSSVEMAENLPQEKQISLSKCLEASLALCVICNDPPEDAVVSVCGHVFCNQCIYDRLS 761
+ + S LP+E + L LE+S A+C CN+PPE VV++CGH+FC +C+ + ++
Sbjct: 721 VGKVSEAAVRRLPREARSRLINRLESSSAICYECNEPPEKPVVTLCGHIFCYECVLEYIT 780
Query: 762 GNDKQCPATNCKGRLNTASVFSNATLSNCFSNQDCDNSPCCSGCEVEESEPWSRSQSYES 821
G++ CP CK +L VFS ++L NC S D+S C S + + + + S
Sbjct: 781 GDENTCPVPRCKQQLARDVVFSESSLRNCTS----DDSGCSSSHDNGLDRSVFQKRDFCS 836
Query: 822 SKMKAALKVLKS--------STVEGE-------------------------------KAI 842
SK+KA L +L+S S G+ K I
Sbjct: 837 SKIKAVLDILQSLSQPDSPNSAQHGQMPSSSRPYDDDDVTIVEPMRLHSSSPSQGAVKTI 896
Query: 843 VFTQWTSMLDLLGVSLKNSSIQYRRLDGNMSVAARDKAIKDFNVLPEVSVMIMCLKAASL 902
+F+QWT MLDL+ + + S I++RRLDG MS+AARD+A+K+F+ P+V VM+M LKA +L
Sbjct: 897 IFSQWTGMLDLVELRILESGIEFRRLDGTMSLAARDRAVKEFSKKPDVKVMLMSLKAGNL 956
Query: 903 GLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQXXXXXXXXXXXXXXXXXXILALQEKK 962
GLN++ A HV++LDLWWNPTTEDQAIDRAHRIGQ IL LQE+K
Sbjct: 957 GLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILKLQEEK 1016
Query: 963 RKVVAHAFGENDTGGRQSQLTVDELKCLFKI 993
R +VA AFGE G ++LTVD+LK LF +
Sbjct: 1017 RTMVASAFGEEHGGSSATRLTVDDLKYLFMV 1047
>AT1G61140.2 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22536293-22540610 REVERSE
LENGTH=1022
Length = 1022
Score = 541 bits (1395), Expect = e-154, Method: Compositional matrix adjust.
Identities = 293/503 (58%), Positives = 346/503 (68%), Gaps = 52/503 (10%)
Query: 271 ISQSSKQVNSQLNMVGSNRRKACDERNILQVALQVLSQPKSEVSLPDGLLAVPLLRHQRI 330
+S V+ N G + ++ E I Q ALQ L+QP SE LPDG+L VPLLRHQRI
Sbjct: 510 VSSEYSTVSHNFNQSGGLKLQSNKENMIFQAALQDLTQPNSEAILPDGVLTVPLLRHQRI 569
Query: 331 ALSWMVQKETSCSYCSGGILADDQGLGKTVTTIALILKQRPPALTVCPNVQKGEL----- 385
ALSWM QKETS CSGGILADDQGLGKTV+TIALILK+R C K E+
Sbjct: 570 ALSWMAQKETSGFPCSGGILADDQGLGKTVSTIALILKERSKPAQACEESTKKEIFDLES 629
Query: 386 -----------------EASNLSMNLLEQEKGG---------PSAGTLIVCPTSVLRQWA 419
E S L N E + GG P+AGTL+VCPTSV+RQWA
Sbjct: 630 ETGECAPLKPSGRSKHFEHSQLLSN--ENKVGGDSVGKVTGRPAAGTLVVCPTSVMRQWA 687
Query: 420 EELQNKVTSQANLSVLVYHGRNRTKDPYEVAKYDVVLTTYAIVSLEVPKQPIVNKDGEEK 479
+EL KVTS+ANLSVLVYHG +RTKDP+E+AKYDVV+TT++IVS+EVPKQP+V+ + EEK
Sbjct: 688 DELHKKVTSEANLSVLVYHGSSRTKDPHELAKYDVVVTTFSIVSMEVPKQPLVDDEDEEK 747
Query: 480 GIFEDYALPS------RKRKYPSNSDMSGKKELDSTMLEAVSQPLAKVAWFRVVLDEAQS 533
D + +KRKYP +S G K +E +S PLAKV+WFRVVLDEAQS
Sbjct: 748 DGVHDGGTAATGFCSNKKRKYPPDSKKKGSK---KKKVEFLSGPLAKVSWFRVVLDEAQS 804
Query: 534 IKNRKTQFASACSDLHAKRRWCLSGTPIQNSIDDLYSYFKFLRYSPYDVYPSFCATIKIP 593
IKN KTQ A AC L AKRRWCLSGTPIQNSIDDLYSYF+FL+Y PY Y FC+TIK P
Sbjct: 805 IKNYKTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYSSYVLFCSTIKNP 864
Query: 594 ISRSPTTGYRKLQAVLNTIMLRRTKGTLLDGEPIISLPPKFVKLEKVDFSREEHGFYLKL 653
I+R+P GY+KLQA+L T+MLRRTKG+LLDG+PIISLPPK ++L KVDF+ EE FY KL
Sbjct: 865 ITRNPVKGYQKLQAILKTVMLRRTKGSLLDGKPIISLPPKSIELRKVDFTVEERDFYSKL 924
Query: 654 EADSRAQFKKYADAGTVLQNYSNILQMLLHLRQACDHPLLVKPYNSSSLWRSSVEMAENL 713
EA+SR QF++YA+AGTV QNY NIL MLL LRQACDHPLLV S W SSV +A
Sbjct: 925 EAESRTQFREYAEAGTVKQNYVNILLMLLRLRQACDHPLLVNG-EYSFTWESSVGLA--- 980
Query: 714 PQEKQISLSKCLEASLALCVICN 736
+KQI +ASLA+C ICN
Sbjct: 981 --KKQIQ----SDASLAICGICN 997
>AT3G16600.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr3:5652839-5655670 REVERSE LENGTH=638
Length = 638
Score = 513 bits (1321), Expect = e-145, Method: Compositional matrix adjust.
Identities = 289/699 (41%), Positives = 394/699 (56%), Gaps = 121/699 (17%)
Query: 294 DERNILQVALQVLSQPKSEVSLPDGLLAVPLLRHQRIALSWMVQKETSCSYCSGGILADD 353
+ER I Q ALQ L QPK+E LP G+L VPL+RHQ+IAL+WM +KE +C GGILADD
Sbjct: 23 NERVIYQAALQDLKQPKTEKDLPPGVLTVPLMRHQKIALNWMRKKEKRSRHCLGGILADD 82
Query: 354 QGLGKTVTTIALILKQRPPALTVCPNVQKGELEASNLSMNLLEQEKGGPSAGTLIVCPTS 413
QGLGKT++TI+LIL Q+ S + + KG S GTLIVCP S
Sbjct: 83 QGLGKTISTISLILLQKLK------------------SQSKQRKRKGQNSGGTLIVCPAS 124
Query: 414 VLRQWAEELQNKVTSQANLSVLVYHGRNRTKDPYEVAKYDVVLTTYAIVSLEVPKQPIVN 473
V++QWA E++ KV+ + LSVLV+HG +RTKDP E+A YDVV+TTYAIV+ EVP+ P++N
Sbjct: 125 VVKQWAREVKEKVSDEHKLSVLVHHGSHRTKDPTEIAIYDVVMTTYAIVTNEVPQNPMLN 184
Query: 474 KDGEEKGIFEDYALPSRKRKYPSNSDMSGKKELD-STMLEAVSQPLAKVAWFRVVLDEAQ 532
+ Y S M G++ LD S++++ L +V W RVVLDEA
Sbjct: 185 R-------------------YDS---MRGRESLDGSSLIQPHVGALGRVRWLRVVLDEAH 222
Query: 533 SIKNRKTQFASACSDLHAKRRWCLSGTPIQNSIDDLYSYFKFLRYSPYDVYPSFCATIKI 592
+IKN +T A AC L AKRRWCL+GTPI+N +DDLYSYF+FLRY PY + SF IK
Sbjct: 223 TIKNHRTLIAKACFSLRAKRRWCLTGTPIKNKVDDLYSYFRFLRYHPYAMCNSFHQRIKA 282
Query: 593 PISRSPTTGYRKLQAVLNTIMLRRTKGTLLDGEPIISLPPKFVKLEKVDFSREEHGFYLK 652
PI + P GY+KLQA+L IMLRRTK E FY K
Sbjct: 283 PIDKKPLHGYKKLQAILRGIMLRRTK---------------------------EWSFYRK 315
Query: 653 LEADSRAQFKKYADAGTVLQNYSNILQMLLHLRQACDHPLLVKPYNSSSLWRSSVEMAEN 712
LE +SR +F++YA GT+ ++ + +L MLL LRQAC+HP LV Y+ S R +
Sbjct: 316 LELNSRWKFEEYAADGTLHEHMAYLLVMLLRLRQACNHPQLVNGYSHSDTTRKMSDGVRV 375
Query: 713 LPQEKQISLSKCLEASLALCVICNDPPEDAVVSVCGHVFCNQCIYDRLSGNDKQCPATNC 772
P+E I L+ S C +C+DPP+D VV++CGHVFC +C+ ++G++ CPA NC
Sbjct: 376 APRENLIMFLDLLKLSSTTCSVCSDPPKDPVVTLCGHVFCYECVSVNINGDNNTCPALNC 435
Query: 773 KGRLNTASVFSNATLSNCFSNQDCDNSPCCSGCEVEESEPWSRSQSYESSKMKAALKVLK 832
+L VF+ + + +C ++ D +P
Sbjct: 436 HSQLKHDVVFTESAVRSCINDYD---------------DP-------------------- 460
Query: 833 SSTVEGEKAIVFTQWTSMLDLLGVSLKNSSIQYRRLDGNMSVAARDKAIKDFNVLPEVSV 892
E + A+V ++ ++ ++SS+ R + +R KD ++ V
Sbjct: 461 ----EDKNALVASRRVYFIENPSCD-RDSSVACR------ARQSRHSTNKDNSISGLVCA 509
Query: 893 MIMCLKAASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQXXXXXXXXXXXXXXXX 952
M+M LKA +LGLN++ ASHV++LDLWWNPTTEDQAIDRAHRIGQ
Sbjct: 510 MLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAIDRAHRIGQTRAVTVTRIAIKNTVE 569
Query: 953 XXILALQEKKRKVVAHAFGEND-------TGGRQSQLTV 984
IL L E+KR +VA A GE + T R+S+++V
Sbjct: 570 ERILTLHERKRNIVASALGEKNWQKFCDSTNTRRSRISV 608
>AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein |
chr5:7565374-7570871 REVERSE LENGTH=1029
Length = 1029
Score = 348 bits (893), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 223/686 (32%), Positives = 345/686 (50%), Gaps = 112/686 (16%)
Query: 347 GGILADDQGLGKTVTTIALILKQRPPALT---VCPNVQKGELEASNLS------------ 391
GGILAD GLGKTV TI+L+L A + +CPN + ++ +S++
Sbjct: 414 GGILADAMGLGKTVMTISLLLAHSWKAASTGFLCPNYEGDKVISSSVDDLTSPPVKATKF 473
Query: 392 ----MNLLEQEKGGPSAGTLIVCPTSVLRQWAEELQNKVTSQANLSVLVYHGRNRTKDPY 447
LLEQ+ + G LIVCP ++L QW E++ +LSV V++G++R KD
Sbjct: 474 LGFDKRLLEQKSVLQNGGNLIVCPMTLLGQWKTEIEMHA-KPGSLSVYVHYGQSRPKDAK 532
Query: 448 EVAKYDVVLTTYAIVSLEVPKQPIVNKDGEEKGIFEDYALPSRKRKYPSNSDMSGKKELD 507
+++ DVV+TTY +++ E ++ + +GI+
Sbjct: 533 LLSQSDVVITTYGVLTSEFSQE----NSADHEGIY------------------------- 563
Query: 508 STMLEAVSQPLAKVAWFRVVLDEAQSIKNRKTQFASACSDLHAKRRWCLSGTPIQNSIDD 567
V WFR+VLDEA +IKN K+Q + A + L A RRWCL+GTPIQN+++D
Sbjct: 564 ------------AVRWFRIVLDEAHTIKNSKSQISLAAAALVADRRWCLTGTPIQNNLED 611
Query: 568 LYSYFKFLRYSPYDVYPSFCATIKIPISRSPTTGYRKLQAVLNTIMLRRTKG-TLLDGEP 626
LYS +FLR P+ + + ++ P G + +Q++L IMLRRTK T +G P
Sbjct: 612 LYSLLRFLRIEPWGTWAWWNKLVQKPFEEGDERGLKLVQSILKPIMLRRTKSSTDREGRP 671
Query: 627 IISLPPKFVKLEKVDFSREEHGFYLKLEADSRAQFKKYADAGTVLQNYSNILQMLLHLRQ 686
I+ LPP ++ + S E FY L S+ +F ++ + G VL NY++IL++LL LRQ
Sbjct: 672 ILVLPPADARVIYCELSESERDFYDALFKRSKVKFDQFVEQGKVLHNYASILELLLRLRQ 731
Query: 687 ACDHPLLVKPYN-------------------SSSLWRSSVEM-AENLPQEKQISLSKCLE 726
CDHP LV SS L R ++ +E QE L K +
Sbjct: 732 CCDHPFLVMSRGDTAEYSDLNKLSKRFLSGKSSGLEREGKDVPSEAFVQEVVEELRKGEQ 791
Query: 727 ASLALCVICNDPPEDAVVSVCGHVFCNQCIYDRL-SGNDKQCPATNCKGRLNTASVFSNA 785
C IC + EDAV++ C H C +C+ + CP C+
Sbjct: 792 GE---CPICLEALEDAVLTPCAHRLCRECLLASWRNSTSGLCPV--CR------------ 834
Query: 786 TLSNCFSNQDCDNSPCCSGCEVEESEPWSRSQSYESSKMKAALKVLKSSTVEGEKAIVFT 845
N S Q+ +P S +V+ + W ESSK+ A L+ L+ G K+I+F+
Sbjct: 835 ---NTVSKQELITAPTESRFQVDVEKNW-----VESSKITALLEELEGLRSSGSKSILFS 886
Query: 846 QWTSMLDLLGVSLKNSSIQYRRLDGNMSVAARDKAIKDFNVLPEVSVMIMCLKAASLGLN 905
QWT+ LDLL + L ++ + RLDG +S R+K +K+F+ + V++M LKA +G+N
Sbjct: 887 QWTAFLDLLQIPLSRNNFSFVRLDGTLSQQQREKVLKEFSEDGSILVLLMSLKAGGVGIN 946
Query: 906 LIVASHVLMLDLWWNPTTEDQAIDRAHRIGQXXXXXXXXXXXXXXXXXXILALQEKKRKV 965
L AS+ ++D WWNP E+QA+ R HRIGQ + A+Q +K+++
Sbjct: 947 LTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKEVKIRRFIVKGTVEERMEAVQARKQRM 1006
Query: 966 VAHAFGENDTGGRQSQLTVDELKCLF 991
++ A + + R ++ ++ELK LF
Sbjct: 1007 ISGALTDQEV--RSAR--IEELKMLF 1028
>AT5G43530.1 | Symbols: | Helicase protein with RING/U-box domain |
chr5:17489327-17494830 FORWARD LENGTH=1277
Length = 1277
Score = 337 bits (865), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 228/683 (33%), Positives = 343/683 (50%), Gaps = 102/683 (14%)
Query: 336 VQKETSCSYCSGGILADDQGLGKTVTTIALILKQRP--------PALTVCPNVQKGELEA 387
+Q T+ GGILAD GLGKTV TIALIL RP L N K +
Sbjct: 671 IQFPTATQMARGGILADAMGLGKTVMTIALIL-ARPGRGNPENEDVLVADVNADKRNRKE 729
Query: 388 SNLSMNLLEQEKGGPSAGTLIVCPTSVLRQWAEELQNKVTSQANLSVLVYHGRNRTKDPY 447
++++ + + KGG TLI+CP ++L QW +EL+ + +SVLVY+G +RT D
Sbjct: 730 IHMALTTV-KAKGG----TLIICPMALLSQWKDELETH-SKPDTVSVLVYYGGDRTHDAK 783
Query: 448 EVAKYDVVLTTYAIVSLEVPKQPIVNKDGEEKGIFEDYALPSRKRKYPSNSDMSGKKELD 507
+A +DVVLTTY +++ KQ + N IF
Sbjct: 784 AIASHDVVLTTYGVLT-SAYKQDMAN------SIFH------------------------ 812
Query: 508 STMLEAVSQPLAKVAWFRVVLDEAQSIKNRKTQFASACSDLHAKRRWCLSGTPIQNSIDD 567
++ W+R+VLDEA +IK+ KTQ A A +L + RWCL+GTP+QN ++D
Sbjct: 813 ------------RIDWYRIVLDEAHTIKSWKTQAAKATFELSSHCRWCLTGTPLQNKLED 860
Query: 568 LYSYFKFLRYSPYDVYPSFCATIKIPISRSPTTGYRKLQAVLNTIMLRRTKGTL-LDGEP 626
LYS FL P+ + + I+ P G + ++A+L +MLRRTK T +G
Sbjct: 861 LYSLLCFLHVEPWCNWAWWSKLIQKPYENGDPRGLKLIKAILRPLMLRRTKETRDKEGSL 920
Query: 627 IISLPPKFVKLEKVDFSREEHGFYLKLEADSRAQFKKYADAGTVLQNYSNILQMLLHLRQ 686
I+ LPP V++ + + S E FY L S+ QF ++ G VL NY+NIL++LL LRQ
Sbjct: 921 ILELPPTDVQVIECEQSEAERDFYTALFKRSKVQFDQFVAQGKVLHNYANILELLLRLRQ 980
Query: 687 ACDHPLLVKPYNSS-------SLWRSSVE-----MAENLPQEKQIS--LSKCLEASLALC 732
C+HP LV S SL R ++ +++N P I + + + C
Sbjct: 981 CCNHPFLVMSRADSQQYADLDSLARRFLDNNPDSVSQNAPSRAYIEEVIQDLRDGNSKEC 1040
Query: 733 VICNDPPEDAVVSVCGHVFCNQCIYDRL-SGNDKQCPATNCKGRLNTASVFSNATLSNCF 791
IC + +D V++ C H C +C+ S + CP C+ ++ L +C
Sbjct: 1041 PICLESADDPVLTPCAHRMCRECLLTSWRSPSCGLCPI--CR------TILKRTELISC- 1091
Query: 792 SNQDCDNSPCCSGCEVEESEPWSRSQSYESSKMKAALKVLKS--STVEGEKAIVFTQWTS 849
P S V+ + W ESSK+ LK L+ + GEK+IVF+QWTS
Sbjct: 1092 --------PTDSIFRVDVVKNWK-----ESSKVSELLKCLEKIKKSGSGEKSIVFSQWTS 1138
Query: 850 MLDLLGVSLKNSSIQYRRLDGNMSVAARDKAIKDFNVLPEVSVMIMCLKAASLGLNLIVA 909
LDLL + L+ ++ R DG ++ R+K +K+FN + ++++M LKA +GLNL A
Sbjct: 1139 FLDLLEIPLRRRGFEFLRFDGKLAQKGREKVLKEFNETKQKTILLMSLKAGGVGLNLTAA 1198
Query: 910 SHVLMLDLWWNPTTEDQAIDRAHRIGQXXXXXXXXXXXXXXXXXXILALQEKKRKVVAHA 969
S V ++D WWNP E+QAI R HRIGQ + +Q +K++++A A
Sbjct: 1199 SSVFLMDPWWNPAVEEQAIMRIHRIGQKRTVFVRRFIVKDTVEERMQQVQARKQRMIAGA 1258
Query: 970 FGENDTGGRQSQLTVDELKCLFK 992
+ + R ++L +ELK LF+
Sbjct: 1259 LTDEEV--RSARL--EELKMLFR 1277
>AT1G05120.1 | Symbols: | Helicase protein with RING/U-box domain |
chr1:1471624-1476067 REVERSE LENGTH=833
Length = 833
Score = 314 bits (804), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 241/771 (31%), Positives = 349/771 (45%), Gaps = 155/771 (20%)
Query: 311 SEVSLPDGLLAVPLLRHQRIALSWMVQKETSCSYCSGGILADDQGLGKTVTTIALILKQR 370
+E + P L +PLLR+Q+ L+W ++E S + GGILAD+ G+GKT+ I+L+L +R
Sbjct: 126 AETAEPPSDLIMPLLRYQKEFLAWATKQEQSVA---GGILADEMGMGKTIQAISLVLARR 182
Query: 371 PPALTVCPNVQKGELEASNLSMNLLEQEKGGPSAG-TLIVCPTSVLRQWAEELQNKVTSQ 429
+++ + G +AG TL++CP + QW E+ + TS
Sbjct: 183 E-----------------------VDRAQFGEAAGCTLVLCPLVAVSQWLNEIA-RFTSP 218
Query: 430 ANLSVLVYHGRNRTKDPYEVAKYDVVLTTYAIVSLEV-------------------PKQP 470
+ VLVYHG R K+ E YD VLTTY+ V E PK+
Sbjct: 219 GSTKVLVYHGAKRAKNIKEFMNYDFVLTTYSTVESEYRRNIMPSKVQCAYCSKSFYPKKL 278
Query: 471 IVNKDGEEKGIFEDYALPS---------RKRKYPSNSDMSGKKELDS-----------TM 510
+++ + PS +KRK S+S KE D+
Sbjct: 279 VIH--------LRYFCGPSAVKTAKQSKQKRKKTSDSSSQQGKEADAGEDKKLKKSKKKT 330
Query: 511 LEAVSQP-----------LAKVAWFRVVLDEAQSIKNRKTQFASACSDLHAKRRWCLSGT 559
+ V + L V W R++LDEA IK R++ A A L A RW LSGT
Sbjct: 331 KQTVEKDQLGSDDKEKSLLHSVKWNRIILDEAHYIKERRSNTARAVFALEATYRWALSGT 390
Query: 560 PIQNSIDDLYSYFKFLRYSPYDVY--------------------------PSFC---ATI 590
P+QN + +LYS +FL+ PY Y FC +
Sbjct: 391 PLQNRVGELYSLIRFLQIRPYSYYFCKDCDCRILDYVAHQSCPHCPHNAVRHFCWWNKYV 450
Query: 591 KIPISRSPTTGYRKL------QAVLNTIMLRRTKGTLLDGEPIISLPPKFVKLEKVDFSR 644
PI+ + G K VL I+LRRTK L ++LPP+ + L +
Sbjct: 451 AKPITVYGSFGLGKRAMILLKHKVLKDILLRRTK---LGRAADLALPPRIITLRRDTLDV 507
Query: 645 EEHGFYLKLEADSRAQFKKYADAGTVLQNYSNILQMLLHLRQACDHPLLVKPYNSSSLWR 704
+E +Y L +S+A+F Y +AGT++ NY++I +L LRQA DHP LV NSS
Sbjct: 508 KEFDYYESLYKNSQAEFNTYIEAGTLMNNYAHIFDLLTRLRQAVDHPYLVVYSNSSGANA 567
Query: 705 SSVEMAENLPQEKQISLSKCLEASLALCVICNDPPEDAVVSVCGHVFCNQCIYDRLSGND 764
+ V+ EN +++ C +C+DP ED VV+ C HVFC C+ +
Sbjct: 568 NLVD--ENKSEQE--------------CGLCHDPAEDYVVTSCAHVFCKACLIGFSASLG 611
Query: 765 K-QCPATNCKGRLNTASVFSNATLSNCFSNQDCDNSPCCSGCEVEESEPWSRSQSYESSK 823
K CP + +L T + A + S S + + + S E+ +
Sbjct: 612 KVTCPTCS---KLLTVDWTTKADTEHKASKTTLKGFRASSILNRIKLDDFQTSTKIEALR 668
Query: 824 MKAALKVLKSSTVEGEKAIVFTQWTSMLDLLGVSLKNSSIQYRRLDGNMSVAARDKAIKD 883
+ V + + KAIVF+Q+TS LDL+ +L + +L G+M++AARD AI
Sbjct: 669 EEIRFMVERDGSA---KAIVFSQFTSFLDLINYTLGKCGVSCVQLVGSMTMAARDTAINK 725
Query: 884 FNVLPEVSVMIMCLKAASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQXXXXXXX 943
F P+ V +M LKA + LNL VASHV M+D WWNP E QA DR HRIGQ
Sbjct: 726 FKEDPDCRVFLMSLKAGGVALNLTVASHVFMMDPWWNPAVERQAQDRIHRIGQYKPIRVV 785
Query: 944 XXXXXXXXXXXILALQEKKRKVVAHAFGENDTGGRQ---SQLTVDELKCLF 991
IL LQ+KK V E GG Q +LT ++++ LF
Sbjct: 786 RFIIENTVEERILRLQKKKELVF-----EGTVGGSQEAIGKLTEEDMRFLF 831
>AT5G05130.1 | Symbols: | DNA/RNA helicase protein |
chr5:1512173-1514918 FORWARD LENGTH=862
Length = 862
Score = 306 bits (783), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 224/732 (30%), Positives = 335/732 (45%), Gaps = 129/732 (17%)
Query: 291 KACDERNILQVALQVLSQPKSEVSLPDGLLAVPLLRHQRIALSWMVQKETS--------- 341
K DE N+ + V ++P EV + L HQ+ L W++ +E S
Sbjct: 186 KLVDE-NVKLMGKLVAAEPPREV------IKSELFAHQKEGLGWLLHREKSGELPPFWEE 238
Query: 342 ---------CSYCS--------GGILADDQGLGKTVTTIALILKQR-PPALTVCPNVQKG 383
+Y S GG+ ADD GLGKT+T ++LI R A T P +
Sbjct: 239 KDGEFLNTLTNYRSDKRPDPLRGGVFADDMGLGKTLTLLSLIAFDRYGNASTSTPTEEPL 298
Query: 384 ELEASNLSMNLLEQEKGGPSAG--------------------TLIVCPTSVLRQWAEELQ 423
+ E + ++ +G S TLIVCP SV+ W +L+
Sbjct: 299 DGEGDKIEKKGKKRGRGKSSESVTRKKLKTDDVVGMNVSQKTTLIVCPPSVISAWITQLE 358
Query: 424 NKVTSQANLSVLVYHGRNRTKDPYEVAKYDVVLTTYAIVSLEVPKQPIVNKDGEEKGIFE 483
T L V +YHG RT D E+ KYD+VLTTY +++E +E
Sbjct: 359 EH-TVPGILKVYMYHGGERTDDVNELMKYDIVLTTYGTLAVEES--------------WE 403
Query: 484 DYALPSRKRKYPSNSDMSGKKELDSTMLEAVSQPLAKVAWFRVVLDEAQSIKNRKTQFAS 543
D P+ K+ W R++LDEA +IKN Q +
Sbjct: 404 D-------------------------------SPVKKMEWLRIILDEAHTIKNANAQQSR 432
Query: 544 ACSDLHAKRRWCLSGTPIQNSIDDLYSYFKFLRYSPYDVYPSFCATIKIPISRSPTTGYR 603
L A RRW ++GTPIQN DLYS FLR+ P+ + + + I+ P+ + G
Sbjct: 433 VVCKLKASRRWAVTGTPIQNGSFDLYSLMAFLRFEPFSIKSYWQSLIQRPLGQGNKKGLS 492
Query: 604 KLQAVLNTIMLRRTKGTLLDGEPIISLPPKFVKLEKVDFSREEHGFYLKLEADSRAQFKK 663
+LQ ++ TI LRRTK + +I LPPK V+ V+ S EE Y +E +++ +
Sbjct: 493 RLQVLMATISLRRTK-----EKSLIGLPPKTVETCYVELSPEERQLYDHMEGEAKGVVQN 547
Query: 664 YADAGTVLQNYSNILQMLLHLRQACDHPLLVKPYNSSSLWRSSVEMAENLPQEKQISLSK 723
+ G++++NYS +L ++L LRQ CD L P S +SVE + P+ Q ++
Sbjct: 548 LINNGSLMRNYSTVLSIILRLRQLCDDMSLCPPELRSFTTSTSVEDVTDKPELLQKLVAA 607
Query: 724 CLEASLALCVICNDPPEDAVVSVCGHVFCNQCIYDRLSGNDKQCPATNCKGRLNTASVFS 783
+ C IC PP + +++ C H+FC CI L + CP C+G L + +++
Sbjct: 608 LQDGEDFDCPICISPPTNIIITRCAHIFCRACILQTLQRSKPLCPL--CRGSLTQSDLYN 665
Query: 784 NATLSNCFSNQDCDNSPCCSGCEVEESEPWSRSQSYESSKMKAALKVLKSSTVE--GEKA 841
SN D +++ S +SSK+ A L +L +S E K+
Sbjct: 666 APPPPPDSSNTDGEDA----------------KSSTKSSKVSALLSLLMASRQENPNTKS 709
Query: 842 IVFTQWTSMLDLLGVSLKNSSIQYRRLDGNMSVAARDKAIKDFNVLPEVS---VMIMCLK 898
+VF+Q+ ML LL LK + RLDG M+V R + I +F PE++ V++ LK
Sbjct: 710 VVFSQFRKMLLLLETPLKAAGFTILRLDGAMTVKKRTQVIGEFGN-PELTGPVVLLASLK 768
Query: 899 AASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQXXXXXXXXXXXXXXXXXXILAL 958
A+ G+NL AS V + D WWNP E+QA+DR HRIGQ +L L
Sbjct: 769 ASGTGINLTAASRVYLFDPWWNPAVEEQAMDRIHRIGQKQEVKMIRMIARNSIEERVLEL 828
Query: 959 QEKKRKVVAHAF 970
Q+KK+ + AF
Sbjct: 829 QQKKKNLANEAF 840
>AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:576046-580299
FORWARD LENGTH=678
Length = 678
Score = 258 bits (660), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 205/679 (30%), Positives = 302/679 (44%), Gaps = 138/679 (20%)
Query: 320 LAVPLLRHQRIALSWMVQKETSCSYCSGGILADDQGLGKTVTTIALILKQRPPALTVCPN 379
L +PLL++Q+ L+W +E S GGILAD+ G+GKT+ I+L+L +R
Sbjct: 130 LIIPLLKYQKEFLAWATIQELSA--VRGGILADEMGMGKTIQAISLVLARRE-------- 179
Query: 380 VQKGELEASNLSMNLLEQEKGGPSAG-TLIVCPTSVLRQWAEELQNKVTSQANLSVLVYH 438
+++ K + G TL++ P L QW +E+ +++TS + VL YH
Sbjct: 180 ---------------VDRAKSREAVGHTLVLVPPVALSQWLDEI-SRLTSPGSTRVLQYH 223
Query: 439 GRNRTKDPYEVAKYDVVLTTYAIVSLEVPKQPIVNKDGEEKGIFEDYALPSRKRKYPSNS 498
G R K+ ++ YD VLTT IV E K ++G+
Sbjct: 224 GPKRDKNVQKLMNYDFVLTTSPIVENEYRK---------DEGV----------------- 257
Query: 499 DMSGKKELDSTMLEAVSQPLAKVAWFRVVLDEAQSIKNRKTQFASACSDLHAKRRWCLSG 558
D TM PL + W R+++DEA IKNR ++ A A L A RW LSG
Sbjct: 258 --------DETM-----SPLHSIKWNRIIVDEAHDIKNRSSRTAKAVFALEATYRWALSG 304
Query: 559 TPIQNSIDDLYSY--FKFLRYSPYDVYPSFCAT-IKIPISRSPTTGYRKLQAVLNTIMLR 615
TP+QN +D+LYS + FL + Y Y SF I +R+ T + ++ +L
Sbjct: 305 TPLQNDVDELYSLVSYSFLNFF-YSTYASFAFRHTHITFARNVTVKF-----LIGGNILP 358
Query: 616 RTKGTLLDGEP---IISLPPKFVKLEKVDFSREEHGFYLKLEADSRAQFKKYADAGTVLQ 672
+ ++ P I+ + + S E FY L S+ F Y AGT++
Sbjct: 359 LSIPVRIENVPAVLIMQINTSLGGKRRDALSVVEADFYESLYKVSKTTFDGYIQAGTLMN 418
Query: 673 NYSNILQMLLHLRQACDHPLLVKPYNSSSLWRSSVEMAENLPQEKQISLSKCLEASLALC 732
NY++I +L+ LRQA DHP LV Y+S S ++ + + EK+ C
Sbjct: 419 NYAHIFGLLIRLRQAVDHPYLVS-YSSPS--GANANLLDANKNEKE-------------C 462
Query: 733 VICNDPPEDAVVSVCGHVFCNQCIYDRLSGNDKQCPATNCKGRLNTASVFSNATLSNCFS 792
+DP +D V+ H Q T KG F +++ N +
Sbjct: 463 GFGHDPSKDYFVTSSEH----------------QASKTKLKG-------FRASSILNRIN 499
Query: 793 NQDCDNSPCCSGCEVEESEPWSRSQSYESSKMKAALKVLKSSTVEGEKAIVFTQWTSMLD 852
D S E R S KAIVF+Q+TS LD
Sbjct: 500 LDDFKTSTKIEALREEIRFMVERDWS--------------------AKAIVFSQFTSFLD 539
Query: 853 LLGVSLKNSSIQYRRLDGNMSVAARDKAIKDFNVLPEVSVMIMCLKAASLGLNLIVASHV 912
L+ +L S + +L G+MS AA+D A+K+F P+ V++M L+A + LNL ASHV
Sbjct: 540 LISYALGKSGVSCVQLVGSMSKAAKDAALKNFKEEPDCRVLLMSLQAGGVALNLTAASHV 599
Query: 913 LMLDLWWNPTTEDQAIDRAHRIGQXXXXXXXXXXXXXXXXXXILALQEKKRKVVAHAFGE 972
M+D WWNP E QA DR HRIGQ IL LQ+KK + G+
Sbjct: 600 FMMDPWWNPAVERQAQDRIHRIGQCKPVRVVRFIMEKTVEEKILTLQKKKEDLFESTLGD 659
Query: 973 NDTGGRQSQLTVDELKCLF 991
++ Q +L D++K LF
Sbjct: 660 SEEAVVQ-KLGEDDIKSLF 677
>AT2G40770.1 | Symbols: | zinc ion binding;DNA
binding;helicases;ATP binding;nucleic acid binding |
chr2:17013535-17021315 REVERSE LENGTH=1664
Length = 1664
Score = 119 bits (299), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 103/357 (28%), Positives = 157/357 (43%), Gaps = 53/357 (14%)
Query: 403 SAGTLIVCPTSVLRQWAEELQNKVTSQANLSVLVYHG-RNRTK------DPYEVAKYDVV 455
+ TLIVCP +L QW E+ + T +L +Y G RN + D E+ D+V
Sbjct: 499 TGATLIVCPAPILPQWHSEI-TRHTRLGSLITCIYEGVRNASLSEEPMIDITELLNADIV 557
Query: 456 LTTYAIVSLEVPKQPIVNKDGEEKGIFEDYALPSRKRKYPSNSDMSGKKELDSTMLEAVS 515
LTTY +V K+ + + G + + L +KR YP +
Sbjct: 558 LTTY-----DVLKEDLTHDFDRHDG--DRHCLRFQKR-YP-----------------VIP 592
Query: 516 QPLAKVAWFRVVLDEAQSIKNRKTQFASACSDLHAKRRWCLSGTPIQNSIDDLYSYFKFL 575
PL ++ W+R+ LDEAQ +++ L+ K RWC++GTPIQ +DDL+ KFL
Sbjct: 593 TPLTRIFWWRICLDEAQMVESNAAAATEMALRLYTKHRWCITGTPIQRKLDDLFGLLKFL 652
Query: 576 RYSPYDVYPSFCATIKIPISRSPTTGYRKLQAVLNTIMLRRTKGTLLDGEPIISLPPKFV 635
+ +P+DV + I+ P R T +M R +K + D + LPP+
Sbjct: 653 KANPFDVSRWWIEVIRDPYERRDTKAMEFTHKFFKQVMWRSSKVHVADE---LQLPPQEE 709
Query: 636 KLEKVDFSREEHGFYLK------------LEADSRAQFKK-YADAGTVLQNY---SNILQ 679
+ + FS E FY + +E R K+ + + L + + +L
Sbjct: 710 CVSWLKFSAIEEHFYSRQHDTCVSYAREVIETLKRDILKRGHTSSDNPLVTHAEAAKLLN 769
Query: 680 MLLHLRQACDHPLLVKPYNSSSLWRSSVEMAENLPQEKQISLSKCLEASLALCVICN 736
LL LRQAC HP V SL +S + M E L + + S+ EA L V N
Sbjct: 770 SLLKLRQACCHP-QVGSSGLRSLQQSPMTMEEILMVLVKKTQSEGEEALRVLIVALN 825
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 117/284 (41%), Gaps = 38/284 (13%)
Query: 732 CVICNDPPED-AVVSVCGHVFCNQCIYDRLSGNDKQ--------CPATNCKGRLNTASV- 781
C IC++ + +V CGH C C + Q CP C+ + ++
Sbjct: 1344 CPICHEILRNQKMVFQCGHSTCCNCFFAMTERKSVQETLQKWVMCPI--CRQHTDVRNIA 1401
Query: 782 FSNATLSNCFSNQDCDNSPCCSGCEVEESEPWSRSQSYESSKMKAALKVL---KSSTVEG 838
+++ ++ S+QD ++SE Q +K++A + + KSS +
Sbjct: 1402 YADDRRNSSSSDQDH-----------KDSEASLVVQGSYGTKIEAVTRRILWIKSSDPQT 1450
Query: 839 EKAIVFTQWTSMLDLLGVSLKNSSIQYRRLDGNMS-------VAARDKAIKDFNVLPE-- 889
K +VF+ W +LD+L + +SI R+ G +K + N +
Sbjct: 1451 -KVLVFSSWNDVLDVLEHAFAANSITCIRMKGGRKSQTAISKFKGSEKETQKTNSHQKEE 1509
Query: 890 --VSVMIMCLKAASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQXXXXXXXXXXX 947
+ V+++ ++ + GLNL+ A HV++++ NP E QA+ R HRIGQ
Sbjct: 1510 KSIQVLLLLVQHGANGLNLLEAQHVILVEPLLNPAAEAQAVGRVHRIGQEKPTLVHRFLV 1569
Query: 948 XXXXXXXILALQEKKRKVVAHAFGENDTGGRQSQLTVDELKCLF 991
I L K ++ N Q LT+ +L+ LF
Sbjct: 1570 SGTVEESIYKLNRNKNTNLSSFSSRNTKNQDQQFLTLKDLESLF 1613
>AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr2:523481-526884 FORWARD LENGTH=763
Length = 763
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 145/600 (24%), Positives = 240/600 (40%), Gaps = 141/600 (23%)
Query: 347 GGILADDQGLGKTVTTIALILKQRPPALTVCPNVQKGELEASNLSMNLLEQEKGGPSAGT 406
G ILAD+ GLGKT+ I + LL + P
Sbjct: 234 GAILADEMGLGKTIQAITY--------------------------LTLLSRLNNDPGPH- 266
Query: 407 LIVCPTSVLRQWAEELQNKVTSQANLSVLVYHGRNRTKDPYEVAKYDVVLTTYAIVSLEV 466
L+VCP SVL W EL+ S +VL YHG R A Y L + + +
Sbjct: 267 LVVCPASVLENWERELRKWCPS---FTVLQYHGAAR-------AAYSRELNSLS----KA 312
Query: 467 PKQPIVNKDGEEKGIFEDYALPSRKRKYPSNSDMSGKKELDSTMLEAVSQPLAKVAWFRV 526
K P N + Y+L R S +++ D +L+ + W V
Sbjct: 313 GKPPPFNV------LLVCYSLFERH---------SEQQKDDRKVLK-------RWRWSCV 350
Query: 527 VLDEAQSIKNRKTQFASACSDL--HAKRRWCLSGTPIQNSIDDLYSYFKFLRYSPYDVYP 584
++DEA ++K++ + + +A +R L+GTP+QN + +L+S +F+ P D++
Sbjct: 351 LMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFM--LP-DIFT 407
Query: 585 SFCATIKIPISRSPTTGYRKLQAVLNTIMLRRTKGTLLDGEPIISLPPKFVKLEKVDFSR 644
+ +K ++ T +++++L +LRR K ++ L PK ++E V R
Sbjct: 408 TENVDLKKLLNAEDTELITRMKSILGPFILRRLKSDVMQ-----QLVPKIQRVEYVLMER 462
Query: 645 EEHGFYLKLEADSRA--QFKKYADAGTVLQNYSNIL------QMLLHLRQACDHPLLVKP 696
++ Y + + RA Q + + L + + L R+ +HPLL++
Sbjct: 463 KQEDAYKEAIEEYRAASQARLVKLSSKSLNSLAKALPKRQISNYFTQFRKIANHPLLIRR 522
Query: 697 YNSSSLWRSSVEMAENLPQEKQISLSKCLEASLALCVICNDPPEDAVVSVCGHVFCNQCI 756
S E I +++ L A C+ + + V G F + I
Sbjct: 523 IYSD---------------EDVIRIARKLHPIGAFGFECS--LDRVIEEVKG--FNDFRI 563
Query: 757 YDRLSGNDKQCPATNCKGRLNTASVFSNATLSNCFSNQDCDNSPCCSGCEVEESEPWSRS 816
+ L Q + KG L+ V +A C + E+ S S
Sbjct: 564 HQLLF----QYGVNDTKGTLSDKHVMLSA--------------KCRTLAELLPSMKKSGH 605
Query: 817 QSYESSKMKAALKVLKSSTVEGEKAIVFTQWTSMLDLLGVSLKNSSIQYRRLDGNMSVAA 876
+ S+ + L +L +WT LD++GV+ YRRLDG+ V
Sbjct: 606 RVLIFSQWTSMLDIL--------------EWT--LDVIGVT-------YRRLDGSTQVTD 642
Query: 877 RDKAIKDFNVLPEVSVMIMCLKAASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQ 936
R + FN + ++ +A GLNL A V++ D+ +NP + QA DR HRIGQ
Sbjct: 643 RQTIVDTFNNDKSIFACLLSTRAGGQGLNLTGADTVIIHDMDFNPQIDRQAEDRCHRIGQ 702
>AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA
binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20103807 FORWARD
LENGTH=2045
Length = 2045
Score = 97.8 bits (242), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 104/395 (26%), Positives = 164/395 (41%), Gaps = 94/395 (23%)
Query: 320 LAVPLLRHQRIALSWMVQKETSCSYCSGGILADDQGLGKTVTTIALILKQRPPALTVCPN 379
L V L R+Q+ ++W+ + + GIL DD GLGKT+ A++
Sbjct: 1447 LKVQLRRYQQEGINWLGFLK---RFKLHGILCDDMGLGKTLQASAIVASD---------- 1493
Query: 380 VQKGELEASNLSMNLLEQEKGGPSAGTLIVCPTSVLRQWAEELQNKVTSQANLSVLVYHG 439
E S +++ PS +IVCP++++ WA E++ K + LSVL Y G
Sbjct: 1494 --AAERRGSTDELDVF------PS---IIVCPSTLVGHWAFEIE-KYIDLSLLSVLQYVG 1541
Query: 440 --RNRTKDPYEVAKYDVVLTTYAIVSLEVPKQPIVNKDGEEKGIFEDYALPSRKRKYPSN 497
++R + ++V++T+Y +V +V DY
Sbjct: 1542 SAQDRVSLREQFNNHNVIITSYDVVRKDV-----------------DY------------ 1572
Query: 498 SDMSGKKELDSTMLEAVSQPLAKVAWFRVVLDEAQSIKNRKTQFASACSDLHAKRRWCLS 557
L + +W +LDE IKN K++ +A L A+ R LS
Sbjct: 1573 --------------------LTQFSWNYCILDEGHIIKNAKSKITAAVKQLKAQHRLILS 1612
Query: 558 GTPIQNSIDDLYSYFKFLRYSPYDVYPSFCATIKIPI--SRSPT-------TGYRKLQAV 608
GTPIQN+I +L+S F FL F A+ P+ +R P G ++A+
Sbjct: 1613 GTPIQNNIMELWSLFDFLMPGFLGTERQFQASYGKPLLAARDPKCSAKDAEAGVLAMEAL 1672
Query: 609 LNTIM---LRRTKGTLLDGEPIISLPPKFVKLEKVDFSREEH--GFYLKLEADSRAQFKK 663
+M LRRTK +L P + ++ L V E G K E S +
Sbjct: 1673 HKQVMPFLLRRTKEEVLSDLPEKIIQDRYCDLSPVQLKLYEQFSGSSAKQEISSIIKVDG 1732
Query: 664 YADAGTV----LQNYSNILQMLLHLRQACDHPLLV 694
AD+G + +++ Q L +L + C HPLLV
Sbjct: 1733 SADSGNADVAPTKASTHVFQALQYLLKLCSHPLLV 1767
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 5/160 (3%)
Query: 835 TVEGEKAIVFTQWTSMLDLLGVSLKNS---SIQYRRLDGNMSVAARDKAIKDFNVLPEVS 891
+V + ++F Q ++LD++ L + S+ Y RLDG++ R + +K FN P +
Sbjct: 1827 SVGQHRVLIFAQHKALLDIIEKDLFQAHMKSVTYMRLDGSVVPEKRFEIVKAFNSDPTID 1886
Query: 892 VMIMCLKAASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQXXXXXXXXXXXXXXX 951
V+++ LGLNL A ++ ++ WNP + QA+DRAHR+GQ
Sbjct: 1887 VLLLTTHVGGLGLNLTSADTLVFMEHDWNPMRDHQAMDRAHRLGQKRVVNVHRLIMRGTL 1946
Query: 952 XXXILALQEKKRKVVAHAFGENDTGGRQSQLTVDELKCLF 991
+++LQ+ K V N + D+L LF
Sbjct: 1947 EEKVMSLQKFKVSVANTVI--NAENASMKTMNTDQLLDLF 1984
>AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20104153 FORWARD
LENGTH=2129
Length = 2129
Score = 97.4 bits (241), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 104/395 (26%), Positives = 164/395 (41%), Gaps = 94/395 (23%)
Query: 320 LAVPLLRHQRIALSWMVQKETSCSYCSGGILADDQGLGKTVTTIALILKQRPPALTVCPN 379
L V L R+Q+ ++W+ + + GIL DD GLGKT+ A++
Sbjct: 1478 LKVQLRRYQQEGINWLGFLK---RFKLHGILCDDMGLGKTLQASAIVASD---------- 1524
Query: 380 VQKGELEASNLSMNLLEQEKGGPSAGTLIVCPTSVLRQWAEELQNKVTSQANLSVLVYHG 439
E S +++ PS +IVCP++++ WA E++ K + LSVL Y G
Sbjct: 1525 --AAERRGSTDELDVF------PS---IIVCPSTLVGHWAFEIE-KYIDLSLLSVLQYVG 1572
Query: 440 --RNRTKDPYEVAKYDVVLTTYAIVSLEVPKQPIVNKDGEEKGIFEDYALPSRKRKYPSN 497
++R + ++V++T+Y +V +V DY
Sbjct: 1573 SAQDRVSLREQFNNHNVIITSYDVVRKDV-----------------DY------------ 1603
Query: 498 SDMSGKKELDSTMLEAVSQPLAKVAWFRVVLDEAQSIKNRKTQFASACSDLHAKRRWCLS 557
L + +W +LDE IKN K++ +A L A+ R LS
Sbjct: 1604 --------------------LTQFSWNYCILDEGHIIKNAKSKITAAVKQLKAQHRLILS 1643
Query: 558 GTPIQNSIDDLYSYFKFLRYSPYDVYPSFCATIKIPI--SRSPT-------TGYRKLQAV 608
GTPIQN+I +L+S F FL F A+ P+ +R P G ++A+
Sbjct: 1644 GTPIQNNIMELWSLFDFLMPGFLGTERQFQASYGKPLLAARDPKCSAKDAEAGVLAMEAL 1703
Query: 609 LNTIM---LRRTKGTLLDGEPIISLPPKFVKLEKVDFSREEH--GFYLKLEADSRAQFKK 663
+M LRRTK +L P + ++ L V E G K E S +
Sbjct: 1704 HKQVMPFLLRRTKEEVLSDLPEKIIQDRYCDLSPVQLKLYEQFSGSSAKQEISSIIKVDG 1763
Query: 664 YADAGTV----LQNYSNILQMLLHLRQACDHPLLV 694
AD+G + +++ Q L +L + C HPLLV
Sbjct: 1764 SADSGNADVAPTKASTHVFQALQYLLKLCSHPLLV 1798
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 5/160 (3%)
Query: 835 TVEGEKAIVFTQWTSMLDLLGVSLKNS---SIQYRRLDGNMSVAARDKAIKDFNVLPEVS 891
+V + ++F Q ++LD++ L + S+ Y RLDG++ R + +K FN P +
Sbjct: 1858 SVGQHRVLIFAQHKALLDIIEKDLFQAHMKSVTYMRLDGSVVPEKRFEIVKAFNSDPTID 1917
Query: 892 VMIMCLKAASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQXXXXXXXXXXXXXXX 951
V+++ LGLNL A ++ ++ WNP + QA+DRAHR+GQ
Sbjct: 1918 VLLLTTHVGGLGLNLTSADTLVFMEHDWNPMRDHQAMDRAHRLGQKRVVNVHRLIMRGTL 1977
Query: 952 XXXILALQEKKRKVVAHAFGENDTGGRQSQLTVDELKCLF 991
+++LQ+ K V N + D+L LF
Sbjct: 1978 EEKVMSLQKFKVSVANTVI--NAENASMKTMNTDQLLDLF 2015
>AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr3:4065636-4073992 FORWARD LENGTH=2055
Length = 2055
Score = 86.7 bits (213), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 104/410 (25%), Positives = 155/410 (37%), Gaps = 124/410 (30%)
Query: 307 SQPKSEVSLPDGLLAVPLLRHQRIALSWMVQKETSCSYCSGGILADDQGLGKTVTTIALI 366
S K LP LL L +Q I L W+V T GILAD+ GLGKT+ TIAL+
Sbjct: 520 STTKVRTKLP-FLLKHSLREYQHIGLDWLV---TMYEKKLNGILADEMGLGKTIMTIALL 575
Query: 367 LKQRPPALTVCPNVQKGELEASNLSMNLLEQEKG--GPSAGTLIVCPTSVLRQWAEELQN 424
A C +KG GP LIV PTSV+ W E
Sbjct: 576 ------AHLAC--------------------DKGIWGPH---LIVVPTSVMLNWETEFLK 606
Query: 425 KVTSQANLSVLVYHGRNRTKDP-----YEVAKYDVVLTTYAIVSLEVPKQPIVNKDGEEK 479
+ +L Y G + + ++ + V +TTY +V
Sbjct: 607 WCPA---FKILTYFGSAKERKLKRQGWMKLNSFHVCITTYRLV----------------- 646
Query: 480 GIFEDYALPSRKRKYPSNSDMSGKKELDSTMLEAVSQPLAKVAWFRVVLDEAQSIKNRKT 539
+D + RK+ W ++LDEA IKN K+
Sbjct: 647 --IQDSKMFKRKK------------------------------WKYLILDEAHLIKNWKS 674
Query: 540 QFASACSDLHAKRRWCLSGTPIQNSIDDLYSYFKFLRYSPYDVYPSFCATIKIPISRSPT 599
Q + ++KRR L+GTP+QN + +L+S FL + + F PI+
Sbjct: 675 QRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPIA-GMV 733
Query: 600 TGYRK--------LQAVLNTIMLRRTKGTLLDGEPIISLPPKFVKLEKVDFSREEHGFYL 651
G K L VL +LRR K +EK S+ EH +
Sbjct: 734 EGQEKINKEVIDRLHNVLRPFLLRRLKRD----------------VEKQLPSKHEHVIFC 777
Query: 652 KLEADSRAQFKKYADAGTVLQ------NYSNILQMLLHLRQACDHPLLVK 695
+L R ++ + A T Q ++ ++ +++ LR+ C+HP L +
Sbjct: 778 RLSKRQRNLYEDFI-ASTETQATLTSGSFFGMISIIMQLRKVCNHPDLFE 826
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 67/125 (53%)
Query: 812 PWSRSQSYESSKMKAALKVLKSSTVEGEKAIVFTQWTSMLDLLGVSLKNSSIQYRRLDGN 871
P R ++ K++ +L+ G +A++FTQ T MLD+L + Y RLDG+
Sbjct: 1065 PDRRLIQFDCGKLQELAMLLRKLKFGGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGS 1124
Query: 872 MSVAARDKAIKDFNVLPEVSVMIMCLKAASLGLNLIVASHVLMLDLWWNPTTEDQAIDRA 931
R ++ FN P++ + I+ ++ +G+NL+ A V+ D WNP + QA DR
Sbjct: 1125 TPPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRC 1184
Query: 932 HRIGQ 936
HRIGQ
Sbjct: 1185 HRIGQ 1189
>AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator |
chr3:1802435-1807284 REVERSE LENGTH=1102
Length = 1102
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 97/393 (24%), Positives = 147/393 (37%), Gaps = 108/393 (27%)
Query: 316 PDGLLAVPLLRHQRIALSWMVQKETSCSYCSGGILADDQGLGKTVTTIALILKQRPPALT 375
P L L +Q L WMV + + GILAD+ GLGKT+ TI+LI
Sbjct: 395 PSLLEGGELRSYQLEGLQWMV---SLFNNNLNGILADEMGLGKTIQTISLI--------- 442
Query: 376 VCPNVQKGELEASNLSMNLLEQEKGGPSAGTLIVCPTSVLRQWAEELQNKVTSQANLSVL 435
L + KG P LIV P +VL W E V S ++
Sbjct: 443 -----------------AYLLENKGVPGP-YLIVAPKAVLPNWVNEFATWVPS---IAAF 481
Query: 436 VYHGR--NRTKDPYEVA---KYDVVLTTYAIVSLEVPKQPIVNKDGEEKGIFEDYALPSR 490
+Y GR R ++A K++V++T Y + I D A
Sbjct: 482 LYDGRLEERKAIREKIAGEGKFNVLITHYDL-------------------IMRDKAF--- 519
Query: 491 KRKYPSNSDMSGKKELDSTMLEAVSQPLAKVAWFRVVLDEAQSIKNRKTQFA-SACSDLH 549
L K+ W+ +++DE +KN ++ A + +
Sbjct: 520 ---------------------------LKKIEWYYMIVDEGHRLKNHESALAKTLLTGYR 552
Query: 550 AKRRWCLSGTPIQNSIDDLYSYFKFLRYSPYDVYPSFCATIKIPISRSPTTGY------- 602
KRR L+GTPIQNS+ +L+S FL ++ +F P +
Sbjct: 553 IKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSVQNFEEWFNAPFADRGNVSLTDEEELL 612
Query: 603 --RKLQAVLNTIMLRRTKGTLLDGEPIISLPPKFVKLEKVDFSREEHGFYLKLEADSRAQ 660
+L V+ +LRR K E LP K + K D S + +Y ++ R
Sbjct: 613 IIHRLHHVIRPFILRRKK-----DEVEKFLPGKTQVILKCDMSAWQKVYYKQVTDMGRVG 667
Query: 661 FKKYADAGTVLQNYSNILQMLLHLRQACDHPLL 693
+ + LQN + + LR+ C+HP L
Sbjct: 668 LQTGSGKSKSLQN------LTMQLRKCCNHPYL 694
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 821 SSKMKAALKVLKSSTVEGEKAIVFTQWTSMLDLLGVSLKNSSIQYRRLDGNMSVAARDKA 880
S K + ++L G + ++F+Q T ++D+L + L + +Y RLDG R
Sbjct: 712 SGKFELLDRLLPKLRKAGHRILLFSQMTRLIDVLEIYLTLNDYKYLRLDGTTKTDQRGLL 771
Query: 881 IKDFNVLPEVSVMIMCL--KAASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQ 936
+K FN P+ + L +A LGLNL A V++ D WNP + QA DRAHRIGQ
Sbjct: 772 LKQFNE-PDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQ 828
>AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORWARD
LENGTH=862
Length = 862
Score = 83.6 bits (205), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 64/114 (56%)
Query: 823 KMKAALKVLKSSTVEGEKAIVFTQWTSMLDLLGVSLKNSSIQYRRLDGNMSVAARDKAIK 882
KM+A K++ S +G+K ++F+ MLD+L L + RLDG+ R +
Sbjct: 529 KMRALEKLMASWISKGDKILLFSYSVRMLDILEKFLIRKGYSFARLDGSTPTNLRQSLVD 588
Query: 883 DFNVLPEVSVMIMCLKAASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQ 936
DFN P V ++ KA LGLNL+ A+ V++ D WNP+ + QA DR+ R GQ
Sbjct: 589 DFNASPSKQVFLISTKAGGLGLNLVSANRVVIFDPNWNPSHDLQAQDRSFRYGQ 642
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 126/320 (39%), Gaps = 90/320 (28%)
Query: 324 LLRHQRIALSWMVQKETSCSYCSGGILADDQGLGKTVTTIALILKQRPPALTVCPNVQKG 383
LL HQR + +M + GGIL DD GLGKT+ TIA + A + G
Sbjct: 139 LLEHQREGVKFMYNLYKNNH---GGILGDDMGLGKTIQTIAFL------AAVYGKDGDAG 189
Query: 384 ELEASNLSMNLLEQEKGGPSAGTLIVCPTSVLRQWAEELQNKVTSQANLSVLVYHGRNRT 443
E LLE +KG LI+CP+S++ W E + V VYHG NR
Sbjct: 190 E-------SCLLESDKG----PVLIICPSSIIHNWESEFSRWASF---FKVSVYHGSNRD 235
Query: 444 K--DPYEVAKYDVVLTTYAIVSLEVPKQPIVNKDGEEKGIFEDYALPSRKRKYPSNSDMS 501
+ + +V++T++ ++ P
Sbjct: 236 MILEKLKARGVEVLVTSFDTFRIQGP---------------------------------- 261
Query: 502 GKKELDSTMLEAVSQPLAKVAWFRVVLDEAQSIKNRKTQFASACSDLHAKRRWCLSGTPI 561
L+ + W V+ DEA +KN K++ AC ++ K+R L+GT +
Sbjct: 262 ---------------VLSGINWEIVIADEAHRLKNEKSKLYEACLEIKTKKRIGLTGTVM 306
Query: 562 QNSIDDLYSYFKFLRYSPYDVYPSFCATIKIP--ISRSPTTGYRKLQ----------AVL 609
QN I +L++ F+++ F P + + T R +Q ++L
Sbjct: 307 QNKISELFNLFEWVAPGSLGTREHFRDFYDEPLKLGQRATAPERFVQIADKRKQHLGSLL 366
Query: 610 NTIMLRRTK----GTLLDGE 625
MLRRTK G L+ G+
Sbjct: 367 RKYMLRRTKEETIGHLMMGK 386
>AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 |
chr2:8129154-8133502 FORWARD LENGTH=1187
Length = 1187
Score = 83.2 bits (204), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 101/416 (24%), Positives = 166/416 (39%), Gaps = 93/416 (22%)
Query: 310 KSEVSLPDGL-----LAVPLLRHQRIALSWMVQKETSCSYCSGGILADDQGLGKTVTTIA 364
+S V L GL + L +QR+ + W+ E C +GGI+ D+ GLGKT+ ++
Sbjct: 366 RSSVQLEGGLNIPECIFRKLFDYQRVGVQWLW--ELHCQR-AGGIIGDEMGLGKTIQVLS 422
Query: 365 LILKQRPPALTVCPNVQKGELEASNLSMNLLEQEKGGPSAGTLIVCPTSVLRQWAEELQN 424
+ G L S + PS +I+CP ++LRQW E Q
Sbjct: 423 FL----------------GSLHFSKMYK---------PS---IIICPVTLLRQWRREAQ- 453
Query: 425 KVTSQANLSVL------VYHGRNRTKDPYEVAKYDVVLTTYAIVSLEVPKQPIVNKDGEE 478
K ++ +L HG+ + K A + ++ S PK +K+ ++
Sbjct: 454 KWYPDFHVEILHDSAQDSGHGKGQGK-----ASESDYDSESSVDSDHEPK----SKNTKK 504
Query: 479 KGIFEDYALPSRKRKYPSNSDMSGKKELDSTMLEAVSQPLAKVAWFRVVLDEAQSIKNRK 538
+ L S SG L + L + W VLDE I+N
Sbjct: 505 WDSLLNRVLNSE----------SGLLITTYEQLRLQGEKLLNIEWGYAVLDEGHRIRNPN 554
Query: 539 TQFASACSDLHAKRRWCLSGTPIQNSIDDLYSYFKFLRYSPYDVYPSFCATIKIPIS--- 595
+ C L R ++G PIQN + +L+S F F+ V P F A +PI+
Sbjct: 555 SDITLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFSVPITVGG 614
Query: 596 ---RSP---TTGYR---KLQAVLNTIMLRRTKGTLLDGEPIISLPPKFVKLEKVDFSREE 646
SP +T YR L+ ++ +LRR K + L K + E
Sbjct: 615 YANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADV------------NAHLTK----KTE 658
Query: 647 HGFYLKLEADSRAQFKKYADAGTVLQNYS---NILQMLLHLRQACDHPLLVKPYNS 699
H + L + R+ ++ + + V Q + N L + +R+ C+HP L++ +S
Sbjct: 659 HVLFCSLTVEQRSTYRAFLASSEVEQIFDGNRNSLYGIDVMRKICNHPDLLEREHS 714
Score = 83.2 bits (204), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 65/116 (56%)
Query: 821 SSKMKAALKVLKSSTVEGEKAIVFTQWTSMLDLLGVSLKNSSIQYRRLDGNMSVAARDKA 880
S KMK +VLK +G + ++F+Q MLD+L L + YRR+DG V R
Sbjct: 726 SGKMKVVAEVLKVWKQQGHRVLLFSQTQQMLDILESFLVANEYSYRRMDGLTPVKQRMAL 785
Query: 881 IKDFNVLPEVSVMIMCLKAASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQ 936
I +FN ++ V ++ K LG NL A+ V++ D WNP+ + QA +RA RIGQ
Sbjct: 786 IDEFNNSEDMFVFVLTTKVGGLGTNLTGANRVIIFDPDWNPSNDMQARERAWRIGQ 841
>AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552440-18556669
REVERSE LENGTH=851
Length = 851
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 3/168 (1%)
Query: 809 ESEPWSRSQSY--ESSKMKAALKVLKSSTVEGEKAIVFTQWTSMLDLLGVSLKNSSIQYR 866
E EP+ + S K+ ++LK G + ++F+Q TS LD+L ++ Y
Sbjct: 353 EPEPFEEGEHLVQASGKLLVLDQLLKRLHDSGHRVLLFSQMTSTLDILQDFMELRRYSYE 412
Query: 867 RLDGNMSVAARDKAIKDFNV-LPEVSVMIMCLKAASLGLNLIVASHVLMLDLWWNPTTED 925
RLDG++ R AIK+F+V V ++ +A +GLNL+ A V+ + WNP +
Sbjct: 413 RLDGSVRAEERFAAIKNFSVDGSNAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDK 472
Query: 926 QAIDRAHRIGQXXXXXXXXXXXXXXXXXXILALQEKKRKVVAHAFGEN 973
QA+ RAHRIGQ IL E+K ++ + G+N
Sbjct: 473 QALQRAHRIGQISHVLSINLVTEHSVEEVILRRAERKLQLSHNVVGDN 520
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 96/387 (24%), Positives = 152/387 (39%), Gaps = 112/387 (28%)
Query: 327 HQRIALSWMVQKETSCSYCSGG--ILADDQ-GLGKTVTTIALILKQRPPALTVCPNVQKG 383
HQ +SW++QK Y G +L DQ GLGKT+ I+
Sbjct: 54 HQVEGVSWLIQK-----YLLGVNVVLELDQMGLGKTLQAISF------------------ 90
Query: 384 ELEASNLSMNLLEQEKGGPSAGTLIVCPTSVLRQWAEELQNKVTSQANLSVLVYHG---- 439
++ L+ +G P L++CP SV W E+ N+ T NL VL Y G
Sbjct: 91 --------LSYLKFRQGLPGP-FLVLCPLSVTDGWVSEI-NRFT--PNLEVLRYVGDKYC 138
Query: 440 ----RNRTKDPYEVAKYDVVLTTYAIVSLEVPKQPIVNKDGEEKGIFEDYALPSRKRKYP 495
R D +DV+LTTY I +V++D
Sbjct: 139 RLDMRKSMYDHGHFLPFDVLLTTYDIA--------LVDQDF------------------- 171
Query: 496 SNSDMSGKKELDSTMLEAVSQPLAKVAWFRVVLDEAQSIKNRKTQFASACSD-LHAKRRW 554
L+++ W ++DEAQ +KN + + + RR
Sbjct: 172 ----------------------LSQIPWQYAIIDEAQRLKNPNSVLYNVLLEQFLIPRRL 209
Query: 555 CLSGTPIQNSIDDLYSYFKFLRYSPYDVYPSFCATIK-----IPISRSPTTGYRKLQAVL 609
++GTPIQN++ +L++ F + F + K + +S T Y+ L+ +L
Sbjct: 210 LITGTPIQNNLTELWALMHFCMPLVFGTLDQFLSAFKETGDGLDVSNDKET-YKSLKFIL 268
Query: 610 NTIMLRRTKGTLLDGEPIISLPP---KFVKLEKVDFSREEHGFYLKLEADSRAQFKKYAD 666
MLRRTK L++ ++ LPP V + V ++ + L+ E +
Sbjct: 269 GAFMLRRTKSLLIESGNLV-LPPLTELTVMVPLVSLQKKIYTSILRKELPGLLELSSGGS 327
Query: 667 AGTVLQNYSNILQMLLHLRQACDHPLL 693
T LQN +++ LR+AC HP L
Sbjct: 328 NHTSLQN------IVIQLRKACSHPYL 348
>AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD LENGTH=1202
Length = 1202
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 90/368 (24%), Positives = 147/368 (39%), Gaps = 112/368 (30%)
Query: 341 SCSYCSGGILADDQGLGKTVTTIALILKQRPPALTVCPNVQKGELEASNLSMNLLEQEKG 400
S S + ILAD+ GLGKT+ +IA + AS NL
Sbjct: 239 SWSKKTNVILADEMGLGKTIQSIAFL--------------------ASLFEENL------ 272
Query: 401 GPSAGTLIVCPTSVLRQWAEELQNKVTSQANLSVLVYHGRNRTKD---PYEV-------A 450
+ L+V P S +R W E T +++V++Y G + +D +E +
Sbjct: 273 ---SPHLVVAPLSTIRNWEREF---ATWAPHMNVVMYTGDSEARDVIWEHEFYFSEGRKS 326
Query: 451 KYDVVLTTYAIVSLEVPKQPIVNKDGEEKGIFEDYALPSRKRKYPSNSDMSGKKELDSTM 510
K+DV+LTTY +V +P S
Sbjct: 327 KFDVLLTTYEMV-------------------------------HPGIS------------ 343
Query: 511 LEAVSQPLAKVAWFRVVLDEAQSIKNRKTQFASACSDLHAKRRWCLSGTPIQNSIDDLYS 570
L+ + W +++DE +KN+K++ S+ S +K L+GTP+QN++++L++
Sbjct: 344 ------VLSPIKWTCMIIDEGHRLKNQKSKLYSSLSQFTSKHIVLLTGTPLQNNLNELFA 397
Query: 571 YFKFLRYSPYDVYPSFCATIKIP-ISRSPTTGYRKLQAVLNTIMLRRTKGTLLDGEPIIS 629
FL + F K ISR L +L +LRR K +L +
Sbjct: 398 LMHFLDADKFGSLEKFQDINKEEQISR--------LHQMLAPHLLRRLKKDVLKDK---- 445
Query: 630 LPPKFVKLEKVDFSREEHGFYLKLEADSRAQFKKYADAGTVLQNYSNILQMLLHLRQACD 689
+PPK + +VD S ++ Y + ++ K DA I +L+ LRQ C
Sbjct: 446 VPPKKELILRVDMSSQQKEVYKAVITNNYQVLTKKRDA--------KISNVLMKLRQVCS 497
Query: 690 HPLLVKPY 697
HP L+ +
Sbjct: 498 HPYLLPDF 505
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 821 SSKMKAALKVLKSSTVEGEKAIVFTQWTSMLDLLGVSLKNSSIQYRRLDGNMSVAARDKA 880
S K++ K++ +G + +++TQ+ L LL + Y R+DG +S R
Sbjct: 523 SGKLQLLDKMMVKLKEQGHRVLIYTQFQHTLYLLEDYFTFKNWNYERIDGKISGPERQVR 582
Query: 881 IKDFNVLPEVSV-MIMCLKAASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQ 936
I FN ++ +A +G+NL A V++ D WNP + QA+ R HR+GQ
Sbjct: 583 IDRFNAENSNRFCFLLSTRAGGIGINLATADTVIIYDSDWNPHADLQAMARVHRLGQ 639
>AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD LENGTH=1161
Length = 1161
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 90/368 (24%), Positives = 147/368 (39%), Gaps = 112/368 (30%)
Query: 341 SCSYCSGGILADDQGLGKTVTTIALILKQRPPALTVCPNVQKGELEASNLSMNLLEQEKG 400
S S + ILAD+ GLGKT+ +IA + AS NL
Sbjct: 198 SWSKKTNVILADEMGLGKTIQSIAFL--------------------ASLFEENL------ 231
Query: 401 GPSAGTLIVCPTSVLRQWAEELQNKVTSQANLSVLVYHGRNRTKD---PYEV-------A 450
+ L+V P S +R W E T +++V++Y G + +D +E +
Sbjct: 232 ---SPHLVVAPLSTIRNWEREF---ATWAPHMNVVMYTGDSEARDVIWEHEFYFSEGRKS 285
Query: 451 KYDVVLTTYAIVSLEVPKQPIVNKDGEEKGIFEDYALPSRKRKYPSNSDMSGKKELDSTM 510
K+DV+LTTY +V +P S
Sbjct: 286 KFDVLLTTYEMV-------------------------------HPGIS------------ 302
Query: 511 LEAVSQPLAKVAWFRVVLDEAQSIKNRKTQFASACSDLHAKRRWCLSGTPIQNSIDDLYS 570
L+ + W +++DE +KN+K++ S+ S +K L+GTP+QN++++L++
Sbjct: 303 ------VLSPIKWTCMIIDEGHRLKNQKSKLYSSLSQFTSKHIVLLTGTPLQNNLNELFA 356
Query: 571 YFKFLRYSPYDVYPSFCATIKIP-ISRSPTTGYRKLQAVLNTIMLRRTKGTLLDGEPIIS 629
FL + F K ISR L +L +LRR K +L +
Sbjct: 357 LMHFLDADKFGSLEKFQDINKEEQISR--------LHQMLAPHLLRRLKKDVLKDK---- 404
Query: 630 LPPKFVKLEKVDFSREEHGFYLKLEADSRAQFKKYADAGTVLQNYSNILQMLLHLRQACD 689
+PPK + +VD S ++ Y + ++ K DA I +L+ LRQ C
Sbjct: 405 VPPKKELILRVDMSSQQKEVYKAVITNNYQVLTKKRDA--------KISNVLMKLRQVCS 456
Query: 690 HPLLVKPY 697
HP L+ +
Sbjct: 457 HPYLLPDF 464
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 821 SSKMKAALKVLKSSTVEGEKAIVFTQWTSMLDLLGVSLKNSSIQYRRLDGNMSVAARDKA 880
S K++ K++ +G + +++TQ+ L LL + Y R+DG +S R
Sbjct: 482 SGKLQLLDKMMVKLKEQGHRVLIYTQFQHTLYLLEDYFTFKNWNYERIDGKISGPERQVR 541
Query: 881 IKDFNVLPEVSV-MIMCLKAASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQ 936
I FN ++ +A +G+NL A V++ D WNP + QA+ R HR+GQ
Sbjct: 542 IDRFNAENSNRFCFLLSTRAGGIGINLATADTVIIYDSDWNPHADLQAMARVHRLGQ 598
>AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1507
Length = 1507
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 66/117 (56%)
Query: 820 ESSKMKAALKVLKSSTVEGEKAIVFTQWTSMLDLLGVSLKNSSIQYRRLDGNMSVAARDK 879
+S K++ +LK + ++F Q T ML++L + +Y RLDG+ ++ R
Sbjct: 1204 DSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRRD 1263
Query: 880 AIKDFNVLPEVSVMIMCLKAASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQ 936
++DF ++ V ++ +A LG+NL A V+ + WNPT + QA+DRAHR+GQ
Sbjct: 1264 MVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQ 1320
Score = 73.6 bits (179), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 99/411 (24%), Positives = 150/411 (36%), Gaps = 109/411 (26%)
Query: 311 SEVSLPDGLLAVPLLRHQRIALSWMVQKETSCSYCSG--GILADDQGLGKTVTTIALILK 368
S V P+ L L +Q L W+V +C Y G GILAD+ GLGKT+ +A +
Sbjct: 574 STVQTPE-LFKGTLKEYQMKGLQWLV----NC-YEQGLNGILADEMGLGKTIQAMAFLAH 627
Query: 369 QRPPALTVCPNVQKGELEASNLSMNLLEQEKG--GPSAGTLIVCPTSVLRQWAEELQNKV 426
L +EK GP L+V P SVL WA+E+
Sbjct: 628 --------------------------LAEEKNIWGP---FLVVAPASVLNNWADEISRFC 658
Query: 427 TSQANLSVLVYHGRNRTKDPYEVAKYDVVLTTYAIVSLEVPKQPIVNKDGEEKGIFEDYA 486
+L L Y G L I+ + + + +D + Y
Sbjct: 659 ---PDLKTLPYWG---------------GLQERTILRKNINPKRMYRRDAGFHILITSYQ 700
Query: 487 LPSRKRKYPSNSDMSGKKELDSTMLEAVSQPLAKVAWFRVVLDEAQSIKNRKTQFASACS 546
L KY +V W +VLDEAQ+IK+ +
Sbjct: 701 LLVTDEKY-----------------------FRRVKWQYMVLDEAQAIKSSSSIRWKTLL 737
Query: 547 DLHAKRRWCLSGTPIQNSIDDLYSYFKFLRYSPYDVYPSFCATIKIPISRSPTTG----- 601
+ + R L+GTPIQN++ +L++ F+ +D + F I G
Sbjct: 738 SFNCRNRLLLTGTPIQNNMAELWALLHFIMPMLFDNHDQFNEWFSKGIENHAEHGGTLNE 797
Query: 602 --YRKLQAVLNTIMLRRTKGTLLDGEPIISLPPKFVKLEKVDFSREEHGFY--------- 650
+L A+L MLRR K + + L K S + FY
Sbjct: 798 HQLNRLHAILKPFMLRRVKKDV-----VSELTTKTEVTVHCKLSSRQQAFYQAIKNKISL 852
Query: 651 LKLEADSRAQFKKYADAGTVLQNYSNILQMLLHLRQACDHPLLVKPYNSSS 701
+L +R QF D + N++ +++ LR+ C+HP L + SS
Sbjct: 853 AELFDSNRGQF---TDKKVL-----NLMNIVIQLRKVCNHPELFERNEGSS 895
>AT3G57300.2 | Symbols: INO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1540
Length = 1540
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 66/117 (56%)
Query: 820 ESSKMKAALKVLKSSTVEGEKAIVFTQWTSMLDLLGVSLKNSSIQYRRLDGNMSVAARDK 879
+S K++ +LK + ++F Q T ML++L + +Y RLDG+ ++ R
Sbjct: 1237 DSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRRD 1296
Query: 880 AIKDFNVLPEVSVMIMCLKAASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQ 936
++DF ++ V ++ +A LG+NL A V+ + WNPT + QA+DRAHR+GQ
Sbjct: 1297 MVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQ 1353
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 106/424 (25%), Positives = 165/424 (38%), Gaps = 102/424 (24%)
Query: 311 SEVSLPDGLLAVPLLRHQRIALSWMVQKETSCSYCSG--GILADDQGLGKTVTTIALILK 368
S V P+ L L +Q L W+V +C Y G GILAD+ GLGKT+ +A +
Sbjct: 574 STVQTPE-LFKGTLKEYQMKGLQWLV----NC-YEQGLNGILADEMGLGKTIQAMAFLAH 627
Query: 369 QRPPALTVCPNVQKGELEASNLSMNLLEQEKG--GPSAGTLIVCPTSVLRQWAEELQNKV 426
L +EK GP L+V P SVL WA+E+
Sbjct: 628 --------------------------LAEEKNIWGP---FLVVAPASVLNNWADEISRFC 658
Query: 427 TSQANLSVLVYHG--RNRTKDPYEVAKYDVVLTTYAIVSLEVPKQPIVNKDGEEKGIFED 484
+L L Y G + RT + V+ + I+S F+
Sbjct: 659 ---PDLKTLPYWGGLQERTILRKNINPKRVMFFSTWIIS------------------FDP 697
Query: 485 YALPSR---KR-----KYPSNSDMSGKKELDST---MLEAVSQPLAKVAWFRVVLDEAQS 533
+A+ KR ++ + SDM + T +L + +V W +VLDEAQ+
Sbjct: 698 WAVRQICICKRACNVVRFQTLSDMDAGFHILITSYQLLVTDEKYFRRVKWQYMVLDEAQA 757
Query: 534 IKNRKTQFASACSDLHAKRRWCLSGTPIQNSIDDLYSYFKFLRYSPYDVYPSFCATIKIP 593
IK+ + + + R L+GTPIQN++ +L++ F+ +D + F
Sbjct: 758 IKSSSSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPMLFDNHDQFNEWFSKG 817
Query: 594 ISRSPTTG-------YRKLQAVLNTIMLRRTKGTLLDGEPIISLPPKFVKLEKVDFSREE 646
I G +L A+L MLRR K + + L K S +
Sbjct: 818 IENHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDV-----VSELTTKTEVTVHCKLSSRQ 872
Query: 647 HGFY---------LKLEADSRAQFKKYADAGTVLQNYSNILQMLLHLRQACDHPLLVKPY 697
FY +L +R QF D + N++ +++ LR+ C+HP L +
Sbjct: 873 QAFYQAIKNKISLAELFDSNRGQF---TDKKVL-----NLMNIVIQLRKVCNHPELFERN 924
Query: 698 NSSS 701
SS
Sbjct: 925 EGSS 928
>AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 |
chr2:5544601-5555543 REVERSE LENGTH=1724
Length = 1724
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 90/392 (22%), Positives = 163/392 (41%), Gaps = 105/392 (26%)
Query: 316 PDGLLAVPLLRHQRIALSWMVQKETSCSYCSGGILADDQGLGKTVTTIALILKQRPPALT 375
P+ L+ L +Q L+++V S + ILAD+ GLGKTV +++++
Sbjct: 617 PEWLIGGTLRDYQLEGLNFLV---NSWLNDTNVILADEMGLGKTVQSVSML--------- 664
Query: 376 VCPNVQKGELEASNLSMNLLEQEKGGPSAGTLIVCPTSVLRQWAEELQNKVTSQANLSVL 435
G L+ + Q+ GP L+V P S L WA+E + + ++++
Sbjct: 665 -------GFLQNT--------QQIPGP---FLVVVPLSTLANWAKEFRKWL---PGMNII 703
Query: 436 VYHGRNRTKD---PYEV---------AKYDVVLTTYAIVSLEVPKQPIVNKDGEEKGIFE 483
VY G +++ YE K++ +LTTY +V +
Sbjct: 704 VYVGTRASREVCQQYEFYNEKKVGRPIKFNALLTTYEVV-------------------LK 744
Query: 484 DYALPSRKRKYPSNSDMSGKKELDSTMLEAVSQPLAKVAWFRVVLDEAQSIKNRKTQFAS 543
D A+ L+K+ W +++DEA +KN + Q +
Sbjct: 745 DKAV------------------------------LSKIKWIYLMVDEAHRLKNSEAQLYT 774
Query: 544 ACSDLHAKRRWCLSGTPIQNSIDDLYSYFKFLRYSPYDVYPSFCATIKIPISRSPTTGYR 603
A + K + ++GTP+QNS+++L++ FL + F K +S +
Sbjct: 775 ALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPGKFKNKDEFVENYK-NLSSFNESELA 833
Query: 604 KLQAVLNTIMLRRTKGTLLDGEPIISLPPKFVKLEKVDFSREEHGFYLKLEADSRAQFKK 663
L L +LRR + D E SLPPK ++ +V+ S + +Y + + K
Sbjct: 834 NLHLELRPHILRR---VIKDVEK--SLPPKIERILRVEMSPLQKQYYKWILERNFHDLNK 888
Query: 664 YADAGTVLQNYSNILQMLLHLRQACDHPLLVK 695
V N ++L +++ L++ C+HP L +
Sbjct: 889 -----GVRGNQVSLLNIVVELKKCCNHPFLFE 915
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query: 840 KAIVFTQWTSMLDLLGVSLKNSSIQYRRLDGNMSVAARDKAIKDFNV-LPEVSVMIMCLK 898
+ ++F+Q MLD+L L Q++RLDG+ R +A+ FN + ++ +
Sbjct: 957 RVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKAELRQQAMDHFNAPASDDFCFLLSTR 1016
Query: 899 AASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQ 936
A LG+NL A V++ D WNP + QA+ RAHRIGQ
Sbjct: 1017 AGGLGINLATADTVVIFDSDWNPQNDLQAMSRAHRIGQ 1054
>AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552343-18556669
REVERSE LENGTH=877
Length = 877
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 13/178 (7%)
Query: 809 ESEPWSRSQSY--ESSKMKAALKVLKSSTVEGEKAIVFTQWTSMLDLLGVSLKNSSIQYR 866
E EP+ + S K+ ++LK G + ++F+Q TS LD+L ++ Y
Sbjct: 362 EPEPFEEGEHLVQASGKLLVLDQLLKRLHDSGHRVLLFSQMTSTLDILQDFMELRRYSYE 421
Query: 867 RLDGNMSVAARDKAIKDFNVLPE-----------VSVMIMCLKAASLGLNLIVASHVLML 915
RLDG++ R AIK+F+ E V ++ +A +GLNL+ A V+
Sbjct: 422 RLDGSVRAEERFAAIKNFSAKTERGLDSEVDGSNAFVFMISTRAGGVGLNLVAADTVIFY 481
Query: 916 DLWWNPTTEDQAIDRAHRIGQXXXXXXXXXXXXXXXXXXILALQEKKRKVVAHAFGEN 973
+ WNP + QA+ RAHRIGQ IL E+K ++ + G+N
Sbjct: 482 EQDWNPQVDKQALQRAHRIGQISHVLSINLVTEHSVEEVILRRAERKLQLSHNVVGDN 539
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 97/396 (24%), Positives = 155/396 (39%), Gaps = 121/396 (30%)
Query: 327 HQRIALSWMVQKETSCSYCSGG--ILADDQ-GLGKTVTTIALILKQRPPALTVCPNVQKG 383
HQ +SW++QK Y G +L DQ GLGKT+ I+
Sbjct: 54 HQVEGVSWLIQK-----YLLGVNVVLELDQMGLGKTLQAISF------------------ 90
Query: 384 ELEASNLSMNLLEQEKGGPSAGTLIVCPTSVLRQWAEELQNKVTSQANLSVLVYHGR--- 440
++ L+ +G P L++CP SV W E+ N+ T NL VL Y G
Sbjct: 91 --------LSYLKFRQGLPGP-FLVLCPLSVTDGWVSEI-NRFT--PNLEVLRYVGDKYC 138
Query: 441 --NRTKDPYEVAK---------YDVVLTTYAIVSLEVPKQPIVNKDGEEKGIFEDYALPS 489
+ K Y+ K +DV+LTTY I +V++D
Sbjct: 139 RLDMRKSMYDHVKKSSKGHFLPFDVLLTTYDIA--------LVDQDF------------- 177
Query: 490 RKRKYPSNSDMSGKKELDSTMLEAVSQPLAKVAWFRVVLDEAQSIKNRKTQFASACSD-L 548
L+++ W ++DEAQ +KN + + +
Sbjct: 178 ----------------------------LSQIPWQYAIIDEAQRLKNPNSVLYNVLLEQF 209
Query: 549 HAKRRWCLSGTPIQNSIDDLYSYFKFLRYSPYDVYPSFCATIK--------IPISRSPTT 600
RR ++GTPIQN++ +L++ F + F + K + +S T
Sbjct: 210 LIPRRLLITGTPIQNNLTELWALMHFCMPLVFGTLDQFLSAFKETGDGLSGLDVSNDKET 269
Query: 601 GYRKLQAVLNTIMLRRTKGTLLDGEPIISLPP---KFVKLEKVDFSREEHGFYLKLEADS 657
Y+ L+ +L MLRRTK L++ ++ LPP V + V ++ + L+ E
Sbjct: 270 -YKSLKFILGAFMLRRTKSLLIESGNLV-LPPLTELTVMVPLVSLQKKIYTSILRKELPG 327
Query: 658 RAQFKKYADAGTVLQNYSNILQMLLHLRQACDHPLL 693
+ T LQN +++ LR+AC HP L
Sbjct: 328 LLELSSGGSNHTSLQN------IVIQLRKACSHPYL 357
>AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 |
chr5:25592160-25598405 REVERSE LENGTH=1090
Length = 1090
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 68/116 (58%)
Query: 821 SSKMKAALKVLKSSTVEGEKAIVFTQWTSMLDLLGVSLKNSSIQYRRLDGNMSVAARDKA 880
S K+ + +L++ EG + ++F+Q ML+L+ SL ++ + R+DG R K
Sbjct: 731 SCKLSFIMSLLENLIPEGHRVLIFSQTRKMLNLIQDSLTSNGYSFLRIDGTTKAPDRLKT 790
Query: 881 IKDFNVLPEVSVMIMCLKAASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQ 936
+++F + ++ + LGL L A V+++D WNP+T++Q++DRA+RIGQ
Sbjct: 791 VEEFQEGHVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQ 846
>AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
regulatory protein SNF2, putative |
chr2:18923304-18931769 FORWARD LENGTH=2192
Length = 2192
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 62/101 (61%), Gaps = 3/101 (2%)
Query: 838 GEKAIVFTQWTSMLDLLGVSLKNSSIQYRRLDGNMSVAARDKAIKDFNVLPEVS--VMIM 895
G + ++F+ T +LD+L L+ + YRR+DG S+ R+ AI DFN P+ + ++
Sbjct: 1323 GHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFND-PDTDCFIFLL 1381
Query: 896 CLKAASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQ 936
++AA GLNL A V++ D NP E+QA+ RAHRIGQ
Sbjct: 1382 SIRAAGRGLNLQTADTVVIYDPDPNPKNEEQAVARAHRIGQ 1422
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 103/417 (24%), Positives = 157/417 (37%), Gaps = 125/417 (29%)
Query: 313 VSLPDGLLAVPLLRHQRIALSWMVQKETSCSYCSGGILADDQGLGKTVTTIALILKQRPP 372
V P L A L +Q + L WM+ + + GILAD+ GLGKTV +ALI
Sbjct: 970 VRQPSMLQAGTLRDYQLVGLQWML---SLYNNKLNGILADEMGLGKTVQVMALIA----- 1021
Query: 373 ALTVCPNVQKGELEASNLSMNLLEQEKG--GPSAGTLIVCPTSVLRQWAEELQNKVTSQA 430
L + KG GP LI+ P +VL W EL + S
Sbjct: 1022 ---------------------YLMEFKGNYGPH---LIIVPNAVLVNWKSELHTWLPS-- 1055
Query: 431 NLSVLVYHG----RNRTKDPYEVAKYDVVLTTYAIVSLEVPKQPIVNKDGEEKGIFEDYA 486
+S + Y G R++ + K++V++TTY + + K
Sbjct: 1056 -VSCIYYVGTKDQRSKLFSQVKFEKFNVLVTTYEFIMYDRSK------------------ 1096
Query: 487 LPSRKRKYPSNSDMSGKKELDSTMLEAVSQPLAKVAWFRVVLDEAQSIKNRKTQFASACS 546
L+KV W +++DEAQ +K+R++ A
Sbjct: 1097 -------------------------------LSKVDWKYIIIDEAQRMKDRESVLARDLD 1125
Query: 547 DLHAKRRWCLSGTPIQNSIDDLYSYFKFLRYSPYDVYPSFCATIKIPISR-SPTTG---- 601
+RR L+GTP+QN + +L+S L +D +F P + P
Sbjct: 1126 RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIEDD 1185
Query: 602 ----------YRKLQAVLNTIMLRRTKGTLLDGEPIISLPPKFVKLEKVDFSREEHGFY- 650
+L +L MLRR + ++G SLP K + + S + Y
Sbjct: 1186 WLETEKKVIVIHRLHQILEPFMLRR-RVEDVEG----SLPAKVSVVLRCRMSAIQSAVYD 1240
Query: 651 -------LKLEADS---RAQFKKYADAGTVLQNYSNILQMLLHLRQACDHPLLVKPY 697
L+++ D RAQ A Y + + LR+AC+HPLL PY
Sbjct: 1241 WIKATGTLRVDPDDEKLRAQKNPIYQAKI----YRTLNNRCMELRKACNHPLLNYPY 1293
>AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
regulatory protein SNF2, putative |
chr2:18923304-18931769 FORWARD LENGTH=2193
Length = 2193
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 62/101 (61%), Gaps = 3/101 (2%)
Query: 838 GEKAIVFTQWTSMLDLLGVSLKNSSIQYRRLDGNMSVAARDKAIKDFNVLPEVS--VMIM 895
G + ++F+ T +LD+L L+ + YRR+DG S+ R+ AI DFN P+ + ++
Sbjct: 1324 GHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFND-PDTDCFIFLL 1382
Query: 896 CLKAASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQ 936
++AA GLNL A V++ D NP E+QA+ RAHRIGQ
Sbjct: 1383 SIRAAGRGLNLQTADTVVIYDPDPNPKNEEQAVARAHRIGQ 1423
Score = 73.9 bits (180), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 105/421 (24%), Positives = 156/421 (37%), Gaps = 132/421 (31%)
Query: 313 VSLPDGLLAVPLLRHQRIALSWMVQKETSCSYCSGGILADDQGLGKTVTTIALILKQRPP 372
V P L A L +Q + L WM+ + + GILAD+ GLGKTV +ALI
Sbjct: 970 VRQPSMLQAGTLRDYQLVGLQWML---SLYNNKLNGILADEMGLGKTVQVMALIA----- 1021
Query: 373 ALTVCPNVQKGELEASNLSMNLLEQEKG--GPSAGTLIVCPTSVLRQWAEELQNKVTSQA 430
L + KG GP LI+ P +VL W EL + S
Sbjct: 1022 ---------------------YLMEFKGNYGPH---LIIVPNAVLVNWKSELHTWLPS-- 1055
Query: 431 NLSVLVYHGRNRTKDPYE--------VAKYDVVLTTYAIVSLEVPKQPIVNKDGEEKGIF 482
+S + Y G TKD K++V++TTY + + K
Sbjct: 1056 -VSCIYYVG---TKDQRSKLFSQEVCAMKFNVLVTTYEFIMYDRSK-------------- 1097
Query: 483 EDYALPSRKRKYPSNSDMSGKKELDSTMLEAVSQPLAKVAWFRVVLDEAQSIKNRKTQFA 542
L+KV W +++DEAQ +K+R++ A
Sbjct: 1098 -----------------------------------LSKVDWKYIIIDEAQRMKDRESVLA 1122
Query: 543 SACSDLHAKRRWCLSGTPIQNSIDDLYSYFKFLRYSPYDVYPSFCATIKIPISR-SPTTG 601
+RR L+GTP+QN + +L+S L +D +F P + P
Sbjct: 1123 RDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHN 1182
Query: 602 --------------YRKLQAVLNTIMLRRTKGTLLDGEPIISLPPKFVKLEKVDFSREEH 647
+L +L MLRR + ++G SLP K + + S +
Sbjct: 1183 IEDDWLETEKKVIVIHRLHQILEPFMLRR-RVEDVEG----SLPAKVSVVLRCRMSAIQS 1237
Query: 648 GFY--------LKLEADS---RAQFKKYADAGTVLQNYSNILQMLLHLRQACDHPLLVKP 696
Y L+++ D RAQ A Y + + LR+AC+HPLL P
Sbjct: 1238 AVYDWIKATGTLRVDPDDEKLRAQKNPIYQAKI----YRTLNNRCMELRKACNHPLLNYP 1293
Query: 697 Y 697
Y
Sbjct: 1294 Y 1294
>AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin
remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763
FORWARD LENGTH=1384
Length = 1384
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 141/347 (40%), Gaps = 67/347 (19%)
Query: 349 ILADDQGLGKTVTTIALILKQRPPALTVCPNVQKGELEASNLSMNLLEQEKGGPSAGTLI 408
ILAD+ GLGKT+ +IAL+ AS NL+ L+
Sbjct: 295 ILADEMGLGKTIQSIALL--------------------ASLFEENLIPH---------LV 325
Query: 409 VCPTSVLRQWAEELQNKVTSQANLSVLVYHGRNRTKDPYEVAKYDVVLTTYAIVSLEVPK 468
+ P S LR W E T ++V++Y G T V + + ++ K
Sbjct: 326 IAPLSTLRNWEREF---ATWAPQMNVVMYFG---TAQARAVIREHEFYLSKDQKKIKKKK 379
Query: 469 QPIVNKDGEEKGIFEDYALPSRKRKYPSNSDMSGKKELDSTMLEAVSQPLAKVAWFRVVL 528
++ + ++K I D L S + M+ S L + W +++
Sbjct: 380 SGQISSESKQKRIKFDVLLTSYE------------------MINLDSAVLKPIKWECMIV 421
Query: 529 DEAQSIKNRKTQFASACSDLHAKRRWCLSGTPIQNSIDDLYSYFKFLRYSPYDVYPSFCA 588
DE +KN+ ++ S+ + + R L+GTP+QN++D+L+ FL + F
Sbjct: 422 DEGHRLKNKDSKLFSSLTQYSSNHRILLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQE 481
Query: 589 TIKIPISRSPTTGYRKLQAVLNTIMLRRTKGTLLDGEPIISLPPKFVKLEKVDFSREEHG 648
K I++ +L +L +LRR K ++ +PPK + +VD S +
Sbjct: 482 EFK-DINQEEQIS--RLHKMLAPHLLRRVKKDVMK-----DMPPKKELILRVDLSSLQKE 533
Query: 649 FYLKLEADSRAQFKKYADAGTVLQNYSNILQMLLHLRQACDHPLLVK 695
+Y + + K A L N +++ LR+ C HP +++
Sbjct: 534 YYKAIFTRNYQVLTKKGGAQISLNN------IMMELRKVCCHPYMLE 574
Score = 73.6 bits (179), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 71/144 (49%), Gaps = 8/144 (5%)
Query: 801 CCSGCEVEESEP------WSRSQSYES-SKMKAALKVLKSSTVEGEKAIVFTQWTSMLDL 853
CC +E EP + Q ES K++ K++ +G + +++TQ+ MLDL
Sbjct: 567 CCHPYMLEGVEPVIHDANEAFKQLLESCGKLQLLDKMMVKLKEQGHRVLIYTQFQHMLDL 626
Query: 854 LGVSLKNSSIQYRRLDGNMSVAARDKAIKDFNVLPEVSV-MIMCLKAASLGLNLIVASHV 912
L + QY R+DG + A R I FN ++ +A LG+NL A V
Sbjct: 627 LEDYCTHKKWQYERIDGKVGGAERQIRIDRFNAKNSNKFCFLLSTRAGGLGINLATADTV 686
Query: 913 LMLDLWWNPTTEDQAIDRAHRIGQ 936
++ D WNP + QA+ RAHR+GQ
Sbjct: 687 IIYDSDWNPHADLQAMARAHRLGQ 710
>AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 |
chr5:18083659-18092162 REVERSE LENGTH=2223
Length = 2223
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 2/144 (1%)
Query: 821 SSKMKAALKVLKSSTVEGEKAIVFTQWTSMLDLLG--VSLKNSSIQYRRLDGNMSVAARD 878
S+K+ +LK EG + ++F+Q T +LD+L ++++ + R+DG+++VA R
Sbjct: 1003 SAKLTLLHSMLKVLHKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTFERVDGSVAVADRQ 1062
Query: 879 KAIKDFNVLPEVSVMIMCLKAASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQXX 938
AI FN V ++ +A LG+NL A V++ D +NP + QA++RAHRIGQ
Sbjct: 1063 AAIARFNQDKNRFVFLLSTRACGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSK 1122
Query: 939 XXXXXXXXXXXXXXXXILALQEKK 962
IL L +KK
Sbjct: 1123 RLLVYRLVVRASVEERILQLAKKK 1146
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 91/395 (23%), Positives = 147/395 (37%), Gaps = 109/395 (27%)
Query: 316 PDGLLAVPLLRHQRIALSWMVQKETSCSYCSGG-ILADDQGLGKTVTTIALILKQRPPAL 374
P L L HQ AL+W+ + C + S ILAD+ GLGKTV+ A +
Sbjct: 681 PQELRGGALFAHQLEALNWLRR----CWHKSKNVILADEMGLGKTVSASAFL-------- 728
Query: 375 TVCPNVQKGELEASNLSMNLLEQEKGGPSAGTLIVCPTSVLRQWAEEL------------ 422
S+L G + L++ P S + W E
Sbjct: 729 -------------SSLYFEF------GVARPCLVLVPLSTMPNWLSEFSLWAPLLNVVEY 769
Query: 423 QNKVTSQANLSVLVYHGRNRT---KDPYEVAKYDVVLTTYAIVSLEVPKQPIVNKDGEEK 479
+A + +H +N T K P K++V+LTTY
Sbjct: 770 HGSAKGRAIIRDYEWHAKNSTGTTKKPTSY-KFNVLLTTYE------------------- 809
Query: 480 GIFEDYALPSRKRKYPSNSDMSGKKELDSTMLEAVSQPLAKVAWFRVVLDEAQSIKNRKT 539
M+ A S L V W +V+DE +KN ++
Sbjct: 810 ------------------------------MVLADSSHLRGVPWEVLVVDEGHRLKNSES 839
Query: 540 QFASACSDLHAKRRWCLSGTPIQNSIDDLYSYFKFLRYSPYDVYPSFCATIKIPISRSPT 599
+ S + + R L+GTP+QN+I ++Y+ FL+ S + SF S
Sbjct: 840 KLFSLLNTFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPSSFPSLSSFEERFHDLTSAEKV 899
Query: 600 TGYRKLQAVLNTIMLRRTKGTLLDGEPIISLPPKFVKLEKVDFSREEHGFYLKLEADSRA 659
+KL A MLRR K + ++PPK ++ V+ + + +Y +
Sbjct: 900 EELKKLVA---PHMLRRLKKDAMQ-----NIPPKTERMVPVELTSIQAEYYRAM-LTKNY 950
Query: 660 QFKKYADAGTVLQNYSNILQMLLHLRQACDHPLLV 694
Q + G Q ++L +++ LR+ C+HP L+
Sbjct: 951 QILRNIGKGVAQQ---SMLNIVMQLRKVCNHPYLI 982
>AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1
| chromatin remodeling 1 | chr5:26649050-26652869
FORWARD LENGTH=764
Length = 764
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Query: 840 KAIVFTQWTSMLDLLGVSLKNSSIQYRRLDGNMSVAARDKAIKDF-NVLPEVSVMIMCLK 898
K ++F+QWT +LD++ + R+DG++ + R + IKDF + S+ ++ +
Sbjct: 542 KVLIFSQWTKLLDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSIFLLSTR 601
Query: 899 AASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQ 936
A LG+NL A ++ D WNP + QA+DR HRIGQ
Sbjct: 602 AGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQ 639
>AT5G19310.1 | Symbols: | Homeotic gene regulator |
chr5:6498906-6503432 FORWARD LENGTH=1064
Length = 1064
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 97/392 (24%), Positives = 144/392 (36%), Gaps = 107/392 (27%)
Query: 316 PDGLLAVPLLRHQRIALSWMVQKETSCSYCSGGILADDQGLGKTVTTIALILKQRPPALT 375
P L L +Q L WMV + + GILAD+ GLGKT+ TIALI
Sbjct: 378 PSLLQGGELRSYQLEGLQWMV---SLYNNDYNGILADEMGLGKTIQTIALIAYL------ 428
Query: 376 VCPNVQKGELEASNLSMNLLEQEKGGPSAGTLIVCPTSVLRQWAEELQNKVTSQANLSVL 435
LE+ +L GP LI+ P +VL W E ++S
Sbjct: 429 ---------LESKDLH---------GPH---LILAPKAVLPNWENEF---ALWAPSISAF 464
Query: 436 VYHG--RNRTKDPYEVA--KYDVVLTTYAIVSLEVPKQPIVNKDGEEKGIFEDYALPSRK 491
+Y G RT+ +A K++V++T Y + I D A
Sbjct: 465 LYDGSKEKRTEIRARIAGGKFNVLITHYDL-------------------IMRDKAF---- 501
Query: 492 RKYPSNSDMSGKKELDSTMLEAVSQPLAKVAWFRVVLDEAQSIKNRKTQFASAC-SDLHA 550
L K+ W +++DE +KN + A +
Sbjct: 502 --------------------------LKKIDWNYMIVDEGHRLKNHECALAKTLGTGYRI 535
Query: 551 KRRWCLSGTPIQNSIDDLYSYFKFLRYSPYDVYPSFCATIKIPISRSPTTGY-------- 602
KRR L+GTPIQNS+ +L+S FL ++ +F P + +
Sbjct: 536 KRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSIHNFEEWFNTPFAECGSASLTDEEELLI 595
Query: 603 -RKLQAVLNTIMLRRTKGTLLDGEPIISLPPKFVKLEKVDFSREEHGFYLKLEADSRAQF 661
+L V+ +LRR K E LP K + K D S + +Y ++ R
Sbjct: 596 INRLHHVIRPFLLRRKK-----SEVEKFLPGKTQVILKCDMSAWQKLYYKQVTDVGRVGL 650
Query: 662 KKYADAGTVLQNYSNILQMLLHLRQACDHPLL 693
LQN + + LR+ C+HP L
Sbjct: 651 HSGNGKSKSLQN------LTMQLRKCCNHPYL 676
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 821 SSKMKAALKVLKSSTVEGEKAIVFTQWTSMLDLLGVSLKNSSIQYRRLDGNMSVAARDKA 880
S K + ++L G + ++F+Q T ++DLL + L + Y RLDG+ R
Sbjct: 694 SGKFELLDRLLPKLKKAGHRILLFSQMTRLIDLLEIYLSLNDYMYLRLDGSTKTDQRGIL 753
Query: 881 IKDFNVLPEVSVMIMCL--KAASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQ 936
+K FN P+ + L +A LGLNL A +++ D WNP + QA DRAHRIGQ
Sbjct: 754 LKQFNE-PDSPYFMFLLSTRAGGLGLNLQTADTIIIFDSDWNPQMDQQAEDRAHRIGQ 810
>AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1069
Length = 1069
Score = 76.6 bits (187), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Query: 840 KAIVFTQWTSMLDLLGVSLKNSSIQYRRLDGNMSVAARDKAIKDFNVL-PEVSVMIMCLK 898
+ ++F+Q T +LD+L L QY R+DGN RD +I+ +N E V ++ +
Sbjct: 513 RVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTR 572
Query: 899 AASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQ 936
A LG+NL A V++ D WNP + QA DRAHRIGQ
Sbjct: 573 AGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQ 610
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/381 (21%), Positives = 143/381 (37%), Gaps = 107/381 (28%)
Query: 324 LLRHQRIALSWMVQKETSCSYCSG--GILADDQGLGKTVTTIALILKQRPPALTVCPNVQ 381
L +Q L+W+++ Y +G GILAD+ GLGKT+ TI+L
Sbjct: 194 LRDYQLAGLNWLIR-----LYENGINGILADEMGLGKTLQTISL---------------- 232
Query: 382 KGELEASNLSMNLLEQEKG--GPSAGTLIVCPTSVLRQWAEELQNKVTSQANLSVLVYHG 439
+ L + +G GP ++V P S L W E++ L + + G
Sbjct: 233 ----------LAYLHEYRGINGPH---MVVAPKSTLGNWMNEIRRFCPV---LRAVKFLG 276
Query: 440 ----RNRTKDPYEVA-KYDVVLTTYAIVSLEVPKQPIVNKDGEEKGIFEDYALPSRKRKY 494
R ++ VA K+D+ +T++ + E
Sbjct: 277 NPEERRHIREELLVAGKFDICVTSFEMAIKE----------------------------- 307
Query: 495 PSNSDMSGKKELDSTMLEAVSQPLAKVAWFRVVLDEAQSIKNRKTQFASACSDLHAKRRW 554
L + +W +++DEA IKN + + R
Sbjct: 308 --------------------KTTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRL 347
Query: 555 CLSGTPIQNSIDDLYSYFKFLRYSPYDVYPSFCATIKIPISRSPTTGYRKLQAVLNTIML 614
++GTP+QN++ +L++ FL + +F +I ++L VL +L
Sbjct: 348 LITGTPLQNNLHELWALLNFLLPEVFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLL 407
Query: 615 RRTKGTLLDGEPIISLPPKFVKLEKVDFSREEHGFYLKLEADSRAQFKKYADAGTVLQNY 674
RR K + G LPPK + KV S+ + +Y +A +K +
Sbjct: 408 RRLKSDVEKG-----LPPKKETILKVGMSQMQKQYY-------KALLQKDLEVVNGGGER 455
Query: 675 SNILQMLLHLRQACDHPLLVK 695
+L + + LR+ C+HP L +
Sbjct: 456 KRLLNIAMQLRKCCNHPYLFQ 476
>AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1072
Length = 1072
Score = 76.6 bits (187), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Query: 840 KAIVFTQWTSMLDLLGVSLKNSSIQYRRLDGNMSVAARDKAIKDFNVL-PEVSVMIMCLK 898
+ ++F+Q T +LD+L L QY R+DGN RD +I+ +N E V ++ +
Sbjct: 513 RVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTR 572
Query: 899 AASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQ 936
A LG+NL A V++ D WNP + QA DRAHRIGQ
Sbjct: 573 AGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQ 610
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/381 (21%), Positives = 143/381 (37%), Gaps = 107/381 (28%)
Query: 324 LLRHQRIALSWMVQKETSCSYCSG--GILADDQGLGKTVTTIALILKQRPPALTVCPNVQ 381
L +Q L+W+++ Y +G GILAD+ GLGKT+ TI+L
Sbjct: 194 LRDYQLAGLNWLIR-----LYENGINGILADEMGLGKTLQTISL---------------- 232
Query: 382 KGELEASNLSMNLLEQEKG--GPSAGTLIVCPTSVLRQWAEELQNKVTSQANLSVLVYHG 439
+ L + +G GP ++V P S L W E++ L + + G
Sbjct: 233 ----------LAYLHEYRGINGPH---MVVAPKSTLGNWMNEIRRFCPV---LRAVKFLG 276
Query: 440 ----RNRTKDPYEVA-KYDVVLTTYAIVSLEVPKQPIVNKDGEEKGIFEDYALPSRKRKY 494
R ++ VA K+D+ +T++ + E
Sbjct: 277 NPEERRHIREELLVAGKFDICVTSFEMAIKE----------------------------- 307
Query: 495 PSNSDMSGKKELDSTMLEAVSQPLAKVAWFRVVLDEAQSIKNRKTQFASACSDLHAKRRW 554
L + +W +++DEA IKN + + R
Sbjct: 308 --------------------KTTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRL 347
Query: 555 CLSGTPIQNSIDDLYSYFKFLRYSPYDVYPSFCATIKIPISRSPTTGYRKLQAVLNTIML 614
++GTP+QN++ +L++ FL + +F +I ++L VL +L
Sbjct: 348 LITGTPLQNNLHELWALLNFLLPEVFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLL 407
Query: 615 RRTKGTLLDGEPIISLPPKFVKLEKVDFSREEHGFYLKLEADSRAQFKKYADAGTVLQNY 674
RR K + G LPPK + KV S+ + +Y +A +K +
Sbjct: 408 RRLKSDVEKG-----LPPKKETILKVGMSQMQKQYY-------KALLQKDLEVVNGGGER 455
Query: 675 SNILQMLLHLRQACDHPLLVK 695
+L + + LR+ C+HP L +
Sbjct: 456 KRLLNIAMQLRKCCNHPYLFQ 476
>AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1055
Length = 1055
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/378 (22%), Positives = 144/378 (38%), Gaps = 107/378 (28%)
Query: 327 HQRIALSWMVQKETSCSYCSG--GILADDQGLGKTVTTIALILKQRPPALTVCPNVQKGE 384
+Q L+W+++ Y +G GILAD+ GLGKT+ TI+L+
Sbjct: 192 YQLAGLNWLIR-----LYENGINGILADEMGLGKTLQTISLLA----------------- 229
Query: 385 LEASNLSMNLLEQEKG--GPSAGTLIVCPTSVLRQWAEELQNKVTSQANLSVLVYHG--- 439
L + +G GP ++V P S L W E++ L + + G
Sbjct: 230 ---------YLHEYRGINGPH---MVVAPKSTLGNWMNEIRRFCPV---LRAVKFLGNPE 274
Query: 440 --RNRTKDPYEVAKYDVVLTTYAIVSLEVPKQPIVNKDGEEKGIFEDYALPSRKRKYPSN 497
R+ +D K+D+ +T++ E I E AL
Sbjct: 275 ERRHIREDLLVAGKFDICVTSF------------------EMAIKEKTAL---------- 306
Query: 498 SDMSGKKELDSTMLEAVSQPLAKVAWFRVVLDEAQSIKNRKTQFASACSDLHAKRRWCLS 557
+ +W +++DEA IKN + + R ++
Sbjct: 307 ---------------------RRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLIT 345
Query: 558 GTPIQNSIDDLYSYFKFLRYSPYDVYPSFCATIKIPISRSPTTGYRKLQAVLNTIMLRRT 617
GTP+QN++ +L++ FL + +F +I ++L VL +LRR
Sbjct: 346 GTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRL 405
Query: 618 KGTLLDGEPIISLPPKFVKLEKVDFSREEHGFYLKLEADSRAQFKKYADAGTVLQNYSNI 677
K + G LPPK + KV S+ + +Y +A +K +A +
Sbjct: 406 KSDVEKG-----LPPKKETILKVGMSQMQKQYY-------KALLQKDLEAVNAGGERKRL 453
Query: 678 LQMLLHLRQACDHPLLVK 695
L + + LR+ C+HP L +
Sbjct: 454 LNIAMQLRKCCNHPYLFQ 471
Score = 73.2 bits (178), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 840 KAIVFTQWTSMLDLLGVSLKNSSIQYRRLDGNMSVAARDKAIKDFNVL-PEVSVMIMCLK 898
+ ++F+Q T +LD+L L Y R+DGN RD +I+ +N E V ++ +
Sbjct: 508 RVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTR 567
Query: 899 AASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQ 936
A LG+NL A V++ D WNP + QA DRAHRIGQ
Sbjct: 568 AGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQ 605
>AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1056
Length = 1056
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/378 (22%), Positives = 144/378 (38%), Gaps = 107/378 (28%)
Query: 327 HQRIALSWMVQKETSCSYCSG--GILADDQGLGKTVTTIALILKQRPPALTVCPNVQKGE 384
+Q L+W+++ Y +G GILAD+ GLGKT+ TI+L+
Sbjct: 192 YQLAGLNWLIR-----LYENGINGILADEMGLGKTLQTISLLA----------------- 229
Query: 385 LEASNLSMNLLEQEKG--GPSAGTLIVCPTSVLRQWAEELQNKVTSQANLSVLVYHG--- 439
L + +G GP ++V P S L W E++ L + + G
Sbjct: 230 ---------YLHEYRGINGPH---MVVAPKSTLGNWMNEIRRFCPV---LRAVKFLGNPE 274
Query: 440 --RNRTKDPYEVAKYDVVLTTYAIVSLEVPKQPIVNKDGEEKGIFEDYALPSRKRKYPSN 497
R+ +D K+D+ +T++ E I E AL
Sbjct: 275 ERRHIREDLLVAGKFDICVTSF------------------EMAIKEKTAL---------- 306
Query: 498 SDMSGKKELDSTMLEAVSQPLAKVAWFRVVLDEAQSIKNRKTQFASACSDLHAKRRWCLS 557
+ +W +++DEA IKN + + R ++
Sbjct: 307 ---------------------RRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLIT 345
Query: 558 GTPIQNSIDDLYSYFKFLRYSPYDVYPSFCATIKIPISRSPTTGYRKLQAVLNTIMLRRT 617
GTP+QN++ +L++ FL + +F +I ++L VL +LRR
Sbjct: 346 GTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRL 405
Query: 618 KGTLLDGEPIISLPPKFVKLEKVDFSREEHGFYLKLEADSRAQFKKYADAGTVLQNYSNI 677
K + G LPPK + KV S+ + +Y +A +K +A +
Sbjct: 406 KSDVEKG-----LPPKKETILKVGMSQMQKQYY-------KALLQKDLEAVNAGGERKRL 453
Query: 678 LQMLLHLRQACDHPLLVK 695
L + + LR+ C+HP L +
Sbjct: 454 LNIAMQLRKCCNHPYLFQ 471
Score = 73.2 bits (178), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 840 KAIVFTQWTSMLDLLGVSLKNSSIQYRRLDGNMSVAARDKAIKDFNVL-PEVSVMIMCLK 898
+ ++F+Q T +LD+L L Y R+DGN RD +I+ +N E V ++ +
Sbjct: 508 RVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTR 567
Query: 899 AASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQ 936
A LG+NL A V++ D WNP + QA DRAHRIGQ
Sbjct: 568 AGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQ 605
>AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1057
Length = 1057
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/378 (22%), Positives = 144/378 (38%), Gaps = 107/378 (28%)
Query: 327 HQRIALSWMVQKETSCSYCSG--GILADDQGLGKTVTTIALILKQRPPALTVCPNVQKGE 384
+Q L+W+++ Y +G GILAD+ GLGKT+ TI+L+
Sbjct: 192 YQLAGLNWLIR-----LYENGINGILADEMGLGKTLQTISLLA----------------- 229
Query: 385 LEASNLSMNLLEQEKG--GPSAGTLIVCPTSVLRQWAEELQNKVTSQANLSVLVYHG--- 439
L + +G GP ++V P S L W E++ L + + G
Sbjct: 230 ---------YLHEYRGINGPH---MVVAPKSTLGNWMNEIRRFCPV---LRAVKFLGNPE 274
Query: 440 --RNRTKDPYEVAKYDVVLTTYAIVSLEVPKQPIVNKDGEEKGIFEDYALPSRKRKYPSN 497
R+ +D K+D+ +T++ E I E AL
Sbjct: 275 ERRHIREDLLVAGKFDICVTSF------------------EMAIKEKTAL---------- 306
Query: 498 SDMSGKKELDSTMLEAVSQPLAKVAWFRVVLDEAQSIKNRKTQFASACSDLHAKRRWCLS 557
+ +W +++DEA IKN + + R ++
Sbjct: 307 ---------------------RRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLIT 345
Query: 558 GTPIQNSIDDLYSYFKFLRYSPYDVYPSFCATIKIPISRSPTTGYRKLQAVLNTIMLRRT 617
GTP+QN++ +L++ FL + +F +I ++L VL +LRR
Sbjct: 346 GTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRL 405
Query: 618 KGTLLDGEPIISLPPKFVKLEKVDFSREEHGFYLKLEADSRAQFKKYADAGTVLQNYSNI 677
K + G LPPK + KV S+ + +Y +A +K +A +
Sbjct: 406 KSDVEKG-----LPPKKETILKVGMSQMQKQYY-------KALLQKDLEAVNAGGERKRL 453
Query: 678 LQMLLHLRQACDHPLLVK 695
L + + LR+ C+HP L +
Sbjct: 454 LNIAMQLRKCCNHPYLFQ 471
Score = 73.2 bits (178), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 840 KAIVFTQWTSMLDLLGVSLKNSSIQYRRLDGNMSVAARDKAIKDFNVL-PEVSVMIMCLK 898
+ ++F+Q T +LD+L L Y R+DGN RD +I+ +N E V ++ +
Sbjct: 508 RVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTR 567
Query: 899 AASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQ 936
A LG+NL A V++ D WNP + QA DRAHRIGQ
Sbjct: 568 AGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQ 605
>AT1G48310.1 | Symbols: CHR18, CHA18 | chromatin remodeling factor18
| chr1:17848620-17853731 REVERSE LENGTH=673
Length = 673
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 62/115 (53%)
Query: 822 SKMKAALKVLKSSTVEGEKAIVFTQWTSMLDLLGVSLKNSSIQYRRLDGNMSVAARDKAI 881
+K+ A L L++ G K +VF SML+ L LK + R+DG+ ++R +
Sbjct: 468 AKIPAVLDYLENVIEAGCKFLVFAHHQSMLEELHQFLKKKKVGCIRIDGSTPASSRQALV 527
Query: 882 KDFNVLPEVSVMIMCLKAASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQ 936
DF E+ ++ ++AA +G+ L AS V+ +L W P QA DRAHRIGQ
Sbjct: 528 SDFQDKDEIKAAVLSIRAAGVGITLTAASTVIFAELSWTPGDLIQAEDRAHRIGQ 582
>AT1G08600.1 | Symbols: ATRX, CHR20 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1458
Length = 1458
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 66/131 (50%), Gaps = 16/131 (12%)
Query: 821 SSKMKAALKVLKSSTVEGEKAIVFTQWTSMLDLLGVSLK------------NSSIQYRRL 868
S KM L +L S G+KA+VF+Q LDL+ + L + R+
Sbjct: 1093 SGKMILLLDILSMSADVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKFWKKGKDWYRI 1152
Query: 869 DGNMSVAARDKAIKDFNVLPE---VSVMIMCLKAASLGLNLIVASHVLMLDLWWNPTTED 925
DG + R K + FN P+ V ++ +A SLG+NL A+ V+++D WNPT +
Sbjct: 1153 DGKTESSERQKLVDRFNE-PDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPTYDL 1211
Query: 926 QAIDRAHRIGQ 936
QAI RA R GQ
Sbjct: 1212 QAIFRAWRYGQ 1222
>AT1G08600.2 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 66/131 (50%), Gaps = 16/131 (12%)
Query: 821 SSKMKAALKVLKSSTVEGEKAIVFTQWTSMLDLLGVSLK------------NSSIQYRRL 868
S KM L +L S G+KA+VF+Q LDL+ + L + R+
Sbjct: 1114 SGKMILLLDILSMSADVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKFWKKGKDWYRI 1173
Query: 869 DGNMSVAARDKAIKDFNVLPE---VSVMIMCLKAASLGLNLIVASHVLMLDLWWNPTTED 925
DG + R K + FN P+ V ++ +A SLG+NL A+ V+++D WNPT +
Sbjct: 1174 DGKTESSERQKLVDRFNE-PDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPTYDL 1232
Query: 926 QAIDRAHRIGQ 936
QAI RA R GQ
Sbjct: 1233 QAIFRAWRYGQ 1243
>AT1G08600.4 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 66/131 (50%), Gaps = 16/131 (12%)
Query: 821 SSKMKAALKVLKSSTVEGEKAIVFTQWTSMLDLLGVSLK------------NSSIQYRRL 868
S KM L +L S G+KA+VF+Q LDL+ + L + R+
Sbjct: 1114 SGKMILLLDILSMSADVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKFWKKGKDWYRI 1173
Query: 869 DGNMSVAARDKAIKDFNVLPE---VSVMIMCLKAASLGLNLIVASHVLMLDLWWNPTTED 925
DG + R K + FN P+ V ++ +A SLG+NL A+ V+++D WNPT +
Sbjct: 1174 DGKTESSERQKLVDRFNE-PDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPTYDL 1232
Query: 926 QAIDRAHRIGQ 936
QAI RA R GQ
Sbjct: 1233 QAIFRAWRYGQ 1243
>AT1G08600.3 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 66/131 (50%), Gaps = 16/131 (12%)
Query: 821 SSKMKAALKVLKSSTVEGEKAIVFTQWTSMLDLLGVSLK------------NSSIQYRRL 868
S KM L +L S G+KA+VF+Q LDL+ + L + R+
Sbjct: 1114 SGKMILLLDILSMSADVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKFWKKGKDWYRI 1173
Query: 869 DGNMSVAARDKAIKDFNVLPE---VSVMIMCLKAASLGLNLIVASHVLMLDLWWNPTTED 925
DG + R K + FN P+ V ++ +A SLG+NL A+ V+++D WNPT +
Sbjct: 1174 DGKTESSERQKLVDRFNE-PDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPTYDL 1232
Query: 926 QAIDRAHRIGQ 936
QAI RA R GQ
Sbjct: 1233 QAIFRAWRYGQ 1243
>AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=910
Length = 910
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 92/393 (23%), Positives = 146/393 (37%), Gaps = 100/393 (25%)
Query: 322 VPLLR-HQRIALSWM---VQKETSCSYCSGGILADDQGLGKTVTTIALILKQRPPALTVC 377
V LR HQR + +M V + +G ILADD GLGKT+ +I L+
Sbjct: 177 VKFLRPHQREGVQFMFDCVSGLHGSANINGCILADDMGLGKTLQSITLLYTLLCQGFDGT 236
Query: 378 PNVQKGELEASNLSMNLLEQEKGGPSAGTLIVCPTSVLRQWAEELQNKVTSQANLSVLVY 437
P V+K +IV PTS++ W E++ V + L L
Sbjct: 237 PMVKKA-----------------------IIVTPTSLVSNWEAEIKKWVGDRIQLIALCE 273
Query: 438 HGRNRTKDPYEVAKYDVVLTTYAIVSLEVPKQP----IVNKDGEEKGIFEDYALPSRKRK 493
R D VL+ I S P+ I++ +E + + S K
Sbjct: 274 STR------------DDVLS--GIDSFTRPRSALQVLIIS--------YETFRMHSSKFC 311
Query: 494 YPSNSDMSGKKELDSTMLEAVSQPLAKVAWFRVVLDEAQSIKNRKTQFASACSDLHAKRR 553
+ D+ ++ DEA +KN +T A + L KRR
Sbjct: 312 QSESCDL-------------------------LICDEAHRLKNDQTLTNRALASLTCKRR 346
Query: 554 WCLSGTPIQNSIDDLYSYFKFLRYSPYDVYPSFCATIKIPI--SRSPTTGYR-------- 603
LSGTP+QN +++ ++ F F + PI R PT
Sbjct: 347 VLLSGTPMQNDLEEFFAMVNFTNPGSLGDAAHFRHYYEAPIICGREPTATEEEKNLAADR 406
Query: 604 --KLQAVLNTIMLRRTKGTLLDGEPIISLPPKFVKLEKVDFSREEHGFYLKLEADSRAQF 661
+L + +N +LRRT L + LPPK +++ + + Y S+
Sbjct: 407 SAELSSKVNQFILRRTNALLSN-----HLPPKIIEVVCCKMTTLQSTLYNHF-ISSKNLK 460
Query: 662 KKYADAGTVLQNYSNILQMLLHLRQACDHPLLV 694
+ AD + +L + L++ C+HP L+
Sbjct: 461 RALADNA----KQTKVLAYITALKKLCNHPKLI 489
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 7/158 (4%)
Query: 839 EKAIVFTQWTSMLDLLGVSLKNSSIQYRRLDGNMSVAARDKAIKDFN-VLPEVSVMIMCL 897
++ ++ + +T LDL + + RLDG+ +++ R K + N + ++
Sbjct: 552 DRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGSTTISKRQKLVNRLNDPTKDEFAFLLSS 611
Query: 898 KAASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQXXXXXXXXXXXXXXXXXXILA 957
KA GLNLI A+ +++ D WNP + QA R R GQ +
Sbjct: 612 KAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVWRDGQKKRVYVYRFLSTGTIEEKVYQ 671
Query: 958 LQEKK---RKVVAHAFGENDTGGRQSQ-LTVDELKCLF 991
Q K +KV+ H +N T RQ L+ ++L+ LF
Sbjct: 672 RQMSKEGLQKVIQHEQTDNST--RQGNLLSTEDLRDLF 707
>AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3574
Length = 3574
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 840 KAIVFTQWTSMLDLLGVSLKNSSIQYRRLDGNMSVAARDKAIKDFNVL-PEVSVMIMCLK 898
+ + F+ T +LD++ L +Y RLDG S R I FN + ++ ++
Sbjct: 1091 RVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIFLLSIR 1150
Query: 899 AASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQ 936
A +G+NL A V++ D WNP + QA RAHRIGQ
Sbjct: 1151 AGGVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQ 1188
>AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3543
Length = 3543
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 840 KAIVFTQWTSMLDLLGVSLKNSSIQYRRLDGNMSVAARDKAIKDFNVL-PEVSVMIMCLK 898
+ + F+ T +LD++ L +Y RLDG S R I FN + ++ ++
Sbjct: 1091 RVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIFLLSIR 1150
Query: 899 AASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQ 936
A +G+NL A V++ D WNP + QA RAHRIGQ
Sbjct: 1151 AGGVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQ 1188
>AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3529
Length = 3529
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 840 KAIVFTQWTSMLDLLGVSLKNSSIQYRRLDGNMSVAARDKAIKDFNVL-PEVSVMIMCLK 898
+ + F+ T +LD++ L +Y RLDG S R I FN + ++ ++
Sbjct: 1091 RVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIFLLSIR 1150
Query: 899 AASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQ 936
A +G+NL A V++ D WNP + QA RAHRIGQ
Sbjct: 1151 AGGVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQ 1188
>AT1G05490.1 | Symbols: chr31 | chromatin remodeling 31 |
chr1:1618795-1623195 REVERSE LENGTH=1410
Length = 1410
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 820 ESSKMKAALKVLKSSTVEGEKAIVFTQWTSMLDLLGVSLK-----NSSIQYRRLDGNMSV 874
+S K + ++ ++ V EK +VF+Q+ L L+ L N + + G +
Sbjct: 1197 QSVKTRFLMEFVELCEVIKEKVLVFSQYIDPLKLIMKHLVSRFKWNPGEEVLYMHGKLEQ 1256
Query: 875 AARDKAIKDFN-VLPEVSVMIMCLKAASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHR 933
R I +FN + V + KA S G++L+ AS V++LD+ WNP E QAI RA+R
Sbjct: 1257 KQRQTLINEFNDPKSKAKVFLASTKACSEGISLVGASRVILLDVVWNPAVERQAISRAYR 1316
Query: 934 IGQ 936
IGQ
Sbjct: 1317 IGQ 1319
>AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=908
Length = 908
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 94/395 (23%), Positives = 149/395 (37%), Gaps = 106/395 (26%)
Query: 322 VPLLR-HQRIALSWM---VQKETSCSYCSGGILADDQGLGKTVTTIALILKQRPPALTVC 377
V LR HQR + +M V + +G ILADD GLGKT+ +I L+
Sbjct: 177 VKFLRPHQREGVQFMFDCVSGLHGSANINGCILADDMGLGKTLQSITLLYTLLCQGFDGT 236
Query: 378 PNVQKGELEASNLSMNLLEQEKGGPSAGTLIVCPTSVLRQWAEELQNKVTSQANLSVLVY 437
P V+K +IV PTS++ W E++ V + L L
Sbjct: 237 PMVKKA-----------------------IIVTPTSLVSNWEAEIKKWVGDRIQLIALCE 273
Query: 438 HGRNRTKDPYEVAKYDVVLTTYAIVSLEVPKQP----IVNKDGEEKGIFEDYALPSRKRK 493
R D VL+ I S P+ I++ +E + + S K
Sbjct: 274 STR------------DDVLS--GIDSFTRPRSALQVLIIS--------YETFRMHSSKFC 311
Query: 494 YPSNSDMSGKKELDSTMLEAVSQPLAKVAWFRVVLDEAQSIKNRKTQFASACSDLHAKRR 553
+ D+ ++ DEA +KN +T A + L KRR
Sbjct: 312 QSESCDL-------------------------LICDEAHRLKNDQTLTNRALASLTCKRR 346
Query: 554 WCLSGTPIQNSIDDLYSYFKFLRYSPYDVYPSFCATIKIPI--SRSPTTGYR-------- 603
LSGTP+QN +++ ++ F F + PI R PT
Sbjct: 347 VLLSGTPMQNDLEEFFAMVNFTNPGSLGDAAHFRHYYEAPIICGREPTATEEEKNLAADR 406
Query: 604 --KLQAVLNTIMLRRTKGTLLDGEPIISLPPKFVKLE--KVDFSREEHGFYLKLEADSRA 659
+L + +N +LRRT L + LPPK +++ K+ + + L ++
Sbjct: 407 SAELSSKVNQFILRRTNALLSN-----HLPPKIIEVVCCKMTTLQTTYNGCLCMQL---- 457
Query: 660 QFKKYADAGTVLQNYSNILQMLLHLRQACDHPLLV 694
K A A Q + +L + L++ C+HP L+
Sbjct: 458 ---KRALADNAKQ--TKVLAYITALKKLCNHPKLI 487
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 7/158 (4%)
Query: 839 EKAIVFTQWTSMLDLLGVSLKNSSIQYRRLDGNMSVAARDKAIKDFN-VLPEVSVMIMCL 897
++ ++ + +T LDL + + RLDG+ +++ R K + N + ++
Sbjct: 550 DRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGSTTISKRQKLVNRLNDPTKDEFAFLLSS 609
Query: 898 KAASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQXXXXXXXXXXXXXXXXXXILA 957
KA GLNLI A+ +++ D WNP + QA R R GQ +
Sbjct: 610 KAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVWRDGQKKRVYVYRFLSTGTIEEKVYQ 669
Query: 958 LQEKK---RKVVAHAFGENDTGGRQSQ-LTVDELKCLF 991
Q K +KV+ H +N T RQ L+ ++L+ LF
Sbjct: 670 RQMSKEGLQKVIQHEQTDNST--RQGNLLSTEDLRDLF 705
>AT3G24340.1 | Symbols: chr40 | chromatin remodeling 40 |
chr3:8832085-8835722 REVERSE LENGTH=1132
Length = 1132
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 64/128 (50%), Gaps = 6/128 (4%)
Query: 815 RSQSYESSKMKAALKVLKSSTVEGEKAIVFTQWTSMLDLLGVSLK-----NSSIQYRRLD 869
R + E K K + ++ S EK +V++Q+ L L+ L Q +
Sbjct: 920 RLKYEEGVKTKFLIDFIRISGTVKEKVLVYSQYIDTLKLIMEQLIAECDWTEGEQILLMH 979
Query: 870 GNMSVAARDKAIKDFNVLPEVS-VMIMCLKAASLGLNLIVASHVLMLDLWWNPTTEDQAI 928
G + R I +FN S V++ KA S G++L+ AS V++LD+ WNP+ E QAI
Sbjct: 980 GKVEQRDRQHMIDNFNKPDSGSKVLLASTKACSEGISLVGASRVVILDVVWNPSVESQAI 1039
Query: 929 DRAHRIGQ 936
RA RIGQ
Sbjct: 1040 SRAFRIGQ 1047
>AT2G16390.1 | Symbols: DRD1, CHR35, DMS1 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr2:7097638-7101182 FORWARD LENGTH=888
Length = 888
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 820 ESSKMKAALKVLKSSTVEGEKAIVFTQWT---SMLDLLGVSLKNSSI--QYRRLDGNMSV 874
E K K L ++ GEK +VF+Q+ L+ L K + + L GN S
Sbjct: 692 EGVKAKFFLNLINLCDSAGEKLLVFSQYLIPLKFLERLAALAKGWKLGKEVFVLTGNTSS 751
Query: 875 AARDKAIKDFNVLPEVSVMIMCLKAASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRI 934
R+ +++ FN P+ + +KA G++L+ AS +L+LD+ NP+ QAI RA R
Sbjct: 752 EQREWSMETFNSSPDAKIFFGSIKACGEGISLVGASRILILDVPLNPSVTRQAIGRAFRP 811
Query: 935 GQ 936
GQ
Sbjct: 812 GQ 813
>AT2G21450.1 | Symbols: CHR34 | chromatin remodeling 34 |
chr2:9179622-9182356 REVERSE LENGTH=816
Length = 816
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 5/119 (4%)
Query: 823 KMKAALKVLKSSTVEGEKAIVFTQWT---SMLDLLGVSLKNSSI--QYRRLDGNMSVAAR 877
KMK L +L GEK +VF+Q+ L+ L S+K + + + G+ S R
Sbjct: 621 KMKFFLNLLALCESTGEKLLVFSQYIVPIKTLERLMSSMKGWRLGKEMFTITGDSSNEQR 680
Query: 878 DKAIKDFNVLPEVSVMIMCLKAASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQ 936
+ +++ FN E V +KA G++L+ AS VL+LD+ NP+ QA+ RA+R GQ
Sbjct: 681 EWSMERFNNSLEAKVFFGSIKACGEGISLVGASRVLILDVHLNPSVTQQAVARAYRPGQ 739
>AT5G07810.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / HNH endonuclease
domain-containing protein | chr5:2491412-2498484 REVERSE
LENGTH=1190
Length = 1190
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 51/97 (52%)
Query: 840 KAIVFTQWTSMLDLLGVSLKNSSIQYRRLDGNMSVAARDKAIKDFNVLPEVSVMIMCLKA 899
K +VF +LD + + + I + R+DG R A++ F EV + I+ ++A
Sbjct: 556 KMVVFAHHHKVLDGIQEFICDKGIGFVRIDGTTLPRDRQLAVQSFQFSSEVKIAIIGVEA 615
Query: 900 ASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQ 936
+GL+ A +V+ L+L P+ QA DRAHR GQ
Sbjct: 616 GGVGLDFSAAQNVVFLELPKTPSLLLQAEDRAHRRGQ 652