Miyakogusa Predicted Gene
- Lj3g3v1113460.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr3
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3S8V6_LOTJA |
578 |
88.9 |
89.2 |
(tr|I3S8V6) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT2G28160.1 |
277 |
48.7 |
63.5 |
| Symbols: FIT1, ATBHLH029, FRU, BHLH029, ATBHLH29, ATFIT1 | FER-like regulator of iron uptake | chr2:12004713-12005908 FORWARD LENGTH=318 |
| Medicago |
Medtr2g084280.1 |
382 |
66.2 |
74.1 |
| transcription factor | HC | chr2:35473507-35475350 | 20130731 |
| Soybean |
Glyma13g39650.1 |
395 |
67.9 |
75.0 |
|
| LJGI |
gnl|LJGI|TC57198 |
1933 |
100.0 |
100.0 |
similar to UniRef100_A7PQP7 Cluster: Chromosome chr6 scaffold_25, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_25, whole genome shotgun sequence - Vitis vinifera (Grape), partial (51%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj3g3v1113460.1 |
length: 323 aa. |
| IPR011598 |
Myc-type, basic helix-loop-helix (bHLH) domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0046983 |
protein dimerization activity |
|
|
| Gene3D |
G3DSA:4.10.280.10 |
no description |
1.7e-15 |
134-197 |
| HMMPfam |
PF00010 |
HLH |
1.6e-08 |
139-182 |
| HMMSmart |
SM00353 |
helix |
3.1e-14 |
138-187 |
| ProfileScan |
PS50888 |
BHLH |
15.262 |
132-181 |
| superfamily |
SSF47459 |
HLH, |
5.1e-17 |
130-214 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
178-199 |
| HMMPanther |
PTHR11514 |
MYC |
8.8e-28 |
132-323 |
| Seg |
seg |
seg |
NA |
92-126 |
- Wolf-PSORT
Lj3g3v1113460.1 nucl 4, cysk 4, cysk_nucl 4, chlo 2, cyto 2, pero 2, nucl_plas 2, cyto_pero 2, cysk_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj3g3v1113460.1 |
|