Miyakogusa Predicted Gene
- Lj3g3v1113460.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v1113460.1 Non Chatacterized Hit- tr|K3Y944|K3Y944_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si010736,32.66,8e-19,HLH,Helix-loop-helix domain; MYC,NULL;
seg,NULL; no description,Helix-loop-helix domain;
coiled-coil,CUFF.42256.1
(323 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G28160.1 | Symbols: FIT1, ATBHLH029, FRU, BHLH029, ATBHLH29, ... 277 7e-75
AT2G16910.1 | Symbols: AMS | basic helix-loop-helix (bHLH) DNA-b... 98 7e-21
AT5G57150.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 97 2e-20
AT5G57150.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 96 5e-20
AT5G57150.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 95 5e-20
AT5G57150.4 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 95 6e-20
AT4G29930.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 86 4e-17
AT4G29930.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 86 5e-17
AT4G29930.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 85 9e-17
AT1G12860.1 | Symbols: SCRM2, ICE2 | basic helix-loop-helix (bHL... 76 3e-14
AT4G29930.4 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 76 4e-14
AT2G46510.1 | Symbols: ATAIB, AIB | ABA-inducible BHLH-type tran... 73 3e-13
AT4G17880.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-bind... 73 3e-13
AT1G01260.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 73 3e-13
AT1G01260.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 73 3e-13
AT1G01260.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 73 3e-13
AT5G46760.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-bind... 70 3e-12
AT3G26744.4 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-hel... 70 3e-12
AT3G26744.2 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-hel... 70 3e-12
AT3G26744.1 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-hel... 70 3e-12
AT1G10610.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 68 7e-12
AT1G32640.1 | Symbols: ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 |... 65 5e-11
AT4G21330.1 | Symbols: DYT1 | basic helix-loop-helix (bHLH) DNA-... 65 7e-11
AT4G16430.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 62 6e-10
AT2G22750.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 62 7e-10
AT2G22750.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 61 8e-10
AT5G46830.1 | Symbols: ATNIG1, NIG1 | NACL-inducible gene 1 | ch... 61 9e-10
AT4G09820.1 | Symbols: TT8, BHLH42 | basic helix-loop-helix (bHL... 60 2e-09
AT4G37850.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 60 2e-09
AT4G00870.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 59 4e-09
AT5G65640.1 | Symbols: bHLH093 | beta HLH protein 93 | chr5:2623... 59 6e-09
AT2G22770.1 | Symbols: NAI1 | basic helix-loop-helix (bHLH) DNA-... 58 9e-09
AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 | chr4:15079489-1508... 58 1e-08
AT2G22760.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 57 1e-08
AT5G10570.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 57 1e-08
AT2G24260.1 | Symbols: LRL1 | LJRHL1-like 1 | chr2:10319646-1032... 56 4e-08
AT4G36930.1 | Symbols: SPT | basic helix-loop-helix (bHLH) DNA-b... 55 6e-08
AT1G63650.3 | Symbols: EGL3 | basic helix-loop-helix (bHLH) DNA-... 55 6e-08
AT1G63650.2 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-he... 55 6e-08
AT1G63650.1 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-he... 55 6e-08
AT1G09530.2 | Symbols: PIF3, POC1, PAP3 | phytochrome interactin... 55 8e-08
AT1G09530.1 | Symbols: PIF3, POC1, PAP3 | phytochrome interactin... 55 8e-08
AT5G65640.2 | Symbols: bHLH093 | beta HLH protein 93 | chr5:2623... 53 3e-07
AT5G41315.1 | Symbols: GL3, MYC6.2 | basic helix-loop-helix (bHL... 53 3e-07
AT5G67110.1 | Symbols: ALC | basic helix-loop-helix (bHLH) DNA-b... 52 7e-07
AT2G31220.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 52 7e-07
AT5G58010.1 | Symbols: LRL3 | LJRHL1-like 3 | chr5:23483670-2348... 51 9e-07
AT2G46810.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 51 1e-06
AT5G43175.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 51 1e-06
AT2G31215.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 50 1e-06
AT3G21330.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 50 2e-06
AT4G38070.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 49 4e-06
AT1G06170.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 49 6e-06
AT1G06170.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 49 6e-06
AT2G31210.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 48 7e-06
>AT2G28160.1 | Symbols: FIT1, ATBHLH029, FRU, BHLH029, ATBHLH29,
ATFIT1 | FER-like regulator of iron uptake |
chr2:12004713-12005908 FORWARD LENGTH=318
Length = 318
Score = 277 bits (709), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 155/318 (48%), Positives = 202/318 (63%), Gaps = 24/318 (7%)
Query: 16 NDFELHDFIDDPNFDQFINLIRGE----NEDAICNF--GSDFINDCFIDNNQLLPN---- 65
ND ELH+F+ DPNFDQFINLIRG+ +E+ + +F G + CFID NQ +P
Sbjct: 12 NDLELHNFLVDPNFDQFINLIRGDHQTIDENPVLDFDLGPLQNSPCFIDENQFIPTPVDD 71
Query: 66 -HDGIPFGPSNNSNFVNVYDPISFSCFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 124
D +P SN + +D S
Sbjct: 72 LFDELPDLDSNVAESFRSFDGDSVRAGGEEDEEDYNDGDDSSATTTNNDGTR-------- 123
Query: 125 XXQPKAKSDRSKTLICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQ 184
K K+DRS+TLI ERRRRGRMK+KLYALRSLVPNITKMDKASI+GDAV YV +LQ+Q
Sbjct: 124 ----KTKTDRSRTLISERRRRGRMKDKLYALRSLVPNITKMDKASIVGDAVLYVQELQSQ 179
Query: 185 AKKLKAEVAGLEASLLVSENYQGSINNRIKNVQVTNNNNPISKKIMQVDMFQVEERGYYV 244
AKKLK+++AGLEASL + YQ + K N P SKKI+Q+D+ QVEE+G+YV
Sbjct: 180 AKKLKSDIAGLEASLNSTGGYQEHAPDAQKTQPFRGINPPASKKIIQMDVIQVEEKGFYV 239
Query: 245 KIVCNKGAGVAVSLYRAIESLAGFNVRNTNLATVC-DSFVLTFTMNVKGSEPEINLPNLK 303
++VCNKG GVA SLY+++ESL F V+N+NL++ D+++LT+T++ E +NLPNLK
Sbjct: 240 RLVCNKGEGVAPSLYKSLESLTSFQVQNSNLSSPSPDTYLLTYTLDGTCFEQSLNLPNLK 299
Query: 304 LWVTGALLNQGFEFMASF 321
LW+TG+LLNQGFEF+ SF
Sbjct: 300 LWITGSLLNQGFEFIKSF 317
>AT2G16910.1 | Symbols: AMS | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr2:7331721-7334077
FORWARD LENGTH=571
Length = 571
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 94/161 (58%), Gaps = 21/161 (13%)
Query: 134 RSKTLICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLKAEVA 193
++K L+ ERRRR ++ ++LYALRSLVP ITK+D+ASI+GDA++YV +LQ +AK+L+ E+
Sbjct: 312 QAKNLMAERRRRKKLNDRLYALRSLVPRITKLDRASILGDAINYVKELQNEAKELQDELE 371
Query: 194 GLEASLLVSENYQG--SINNRI------------------KNVQVTNNNNPISKKIMQVD 233
+ S QG S+N + ++V + N+N+ + QVD
Sbjct: 372 ENSETEDGSNRPQGGMSLNGTVVTGFHPGLSCNSNVPSVKQDVDLENSNDKGQEMEPQVD 431
Query: 234 MFQVEERGYYVKIVCNKGAGVAVSLYRAIESLAGFNVRNTN 274
+ Q++ R ++VK++C G L A++SL G V N N
Sbjct: 432 VAQLDGREFFVKVICEYKPGGFTRLMEALDSL-GLEVTNAN 471
>AT5G57150.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:23152361-23154872 FORWARD
LENGTH=247
Length = 247
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 103/182 (56%), Gaps = 10/182 (5%)
Query: 130 AKSDRSKTLICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLK 189
A S SK ++ ER RR ++ ++L+ALRS+VPNITKMDKASII DA+SY+ LQ + KKL+
Sbjct: 48 ASSPASKNIVSERNRRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGLQYEEKKLE 107
Query: 190 AEVAGLE----ASLLVSENYQGSINNRIKNVQVTNNNNPISKKIMQVDMFQVE---ERGY 242
AE+ LE +SL S+++ + + + ++ ++ S +++V +V ER
Sbjct: 108 AEIRELESTPKSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLIEVLELKVTFMGERTM 167
Query: 243 YVKIVCNKGAGVAVSLYRAIESLAGFNVRNTNLATVCDSFVLTFTMNVKGSEPEINLPNL 302
V + CNK V L ESL + +NL + S ++ T+ ++ E E + L
Sbjct: 168 VVSVTCNKRTDTMVKLCEVFESL-NLKILTSNLTSF--SGMIFHTVFIEADEEEQEVLRL 224
Query: 303 KL 304
K+
Sbjct: 225 KI 226
>AT5G57150.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:23152361-23153293 FORWARD
LENGTH=226
Length = 226
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 90/155 (58%), Gaps = 8/155 (5%)
Query: 130 AKSDRSKTLICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLK 189
A S SK ++ ER RR ++ ++L+ALRS+VPNITKMDKASII DA+SY+ LQ + KKL+
Sbjct: 49 ASSPASKNIVSERNRRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGLQYEEKKLE 108
Query: 190 AEVAGLE----ASLLVSENYQGSINNRIKNVQVTNNNNPISKKIMQVDMFQVE---ERGY 242
AE+ LE +SL S+++ + + + ++ ++ S +++V +V ER
Sbjct: 109 AEIRELESTPKSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLIEVLELKVTFMGERTM 168
Query: 243 YVKIVCNKGAGVAVSLYRAIESLAGFNVRNTNLAT 277
V + CNK V L ESL + +NL +
Sbjct: 169 VVSVTCNKRTDTMVKLCEVFESL-NLKILTSNLTS 202
>AT5G57150.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:23152361-23154556 FORWARD
LENGTH=219
Length = 219
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 90/155 (58%), Gaps = 8/155 (5%)
Query: 130 AKSDRSKTLICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLK 189
A S SK ++ ER RR ++ ++L+ALRS+VPNITKMDKASII DA+SY+ LQ + KKL+
Sbjct: 49 ASSPASKNIVSERNRRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGLQYEEKKLE 108
Query: 190 AEVAGLE----ASLLVSENYQGSINNRIKNVQVTNNNNPISKKIMQVDMFQVE---ERGY 242
AE+ LE +SL S+++ + + + ++ ++ S +++V +V ER
Sbjct: 109 AEIRELESTPKSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLIEVLELKVTFMGERTM 168
Query: 243 YVKIVCNKGAGVAVSLYRAIESLAGFNVRNTNLAT 277
V + CNK V L ESL + +NL +
Sbjct: 169 VVSVTCNKRTDTMVKLCEVFESL-NLKILTSNLTS 202
>AT5G57150.4 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:23152361-23154801 FORWARD
LENGTH=264
Length = 264
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 90/155 (58%), Gaps = 8/155 (5%)
Query: 130 AKSDRSKTLICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLK 189
A S SK ++ ER RR ++ ++L+ALRS+VPNITKMDKASII DA+SY+ LQ + KKL+
Sbjct: 49 ASSPASKNIVSERNRRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGLQYEEKKLE 108
Query: 190 AEVAGLE----ASLLVSENYQGSINNRIKNVQVTNNNNPISKKIMQVDMFQVE---ERGY 242
AE+ LE +SL S+++ + + + ++ ++ S +++V +V ER
Sbjct: 109 AEIRELESTPKSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLIEVLELKVTFMGERTM 168
Query: 243 YVKIVCNKGAGVAVSLYRAIESLAGFNVRNTNLAT 277
V + CNK V L ESL + +NL +
Sbjct: 169 VVSVTCNKRTDTMVKLCEVFESL-NLKILTSNLTS 202
>AT4G29930.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14644108-14647449 FORWARD
LENGTH=254
Length = 254
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 22/197 (11%)
Query: 135 SKTLICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLKAEVAG 194
SK ++ ER RR ++ ++L+ALRS+VPNI+K+DKAS+I D++ Y+ +L Q K L+AE+
Sbjct: 53 SKNVVSERNRRQKLNQRLFALRSVVPNISKLDKASVIKDSIDYMQELIDQEKTLEAEIRE 112
Query: 195 LEASLLVSENYQGSINNRIKNVQV---TNNNNPISKKIMQVDM------FQVE------- 238
LE+ + EN + + ++NN+ SKK Q+D + +E
Sbjct: 113 LESRSTLLENPVRDYDCNFAETHLQDFSDNNDMRSKKFKQMDYSTRVQHYPIEVLEMKVT 172
Query: 239 ---ERGYYVKIVCNKGAGVAVSLYRAIESLAGFNVRNTNLATVCDSFVLTFTMNVKGSEP 295
E+ V I C+K V L + +ESL N+ TN ++ L+ T+ ++ E
Sbjct: 173 WMGEKTVVVCITCSKKRETMVQLCKVLESL-NLNILTTNFSSFTSR--LSTTLFLQADEE 229
Query: 296 EINLPNLKLWVTGALLN 312
E + K+ + A N
Sbjct: 230 ESSAVEAKIQMAIAAYN 246
>AT4G29930.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14644108-14647449 FORWARD
LENGTH=225
Length = 225
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 100/178 (56%), Gaps = 13/178 (7%)
Query: 135 SKTLICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLKAEVAG 194
SK ++ ER RR ++ ++L+ALRS+VPNI+K+DKAS+I D++ Y+ +L Q K L+AE+
Sbjct: 53 SKNVVSERNRRQKLNQRLFALRSVVPNISKLDKASVIKDSIDYMQELIDQEKTLEAEIRE 112
Query: 195 LEASLLVSENYQGSINNRIKNVQVTNNNNPISKKIMQVDMFQVEERGYYVKIVCNKGAGV 254
LE+ + EN + R+++ PI +++++ + + E+ V I C+K
Sbjct: 113 LESRSTLLENPMD-YSTRVQHY-------PI--EVLEMKVTWMGEKTVVVCITCSKKRET 162
Query: 255 AVSLYRAIESLAGFNVRNTNLATVCDSFVLTFTMNVKGSEPEINLPNLKLWVTGALLN 312
V L + +ESL N+ TN ++ L+ T+ ++ E E + K+ + A N
Sbjct: 163 MVQLCKVLESL-NLNILTTNFSSFTSR--LSTTLFLQADEEESSAVEAKIQMAIAAYN 217
>AT4G29930.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14644108-14645505 FORWARD
LENGTH=263
Length = 263
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 20/175 (11%)
Query: 135 SKTLICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLKAEVAG 194
SK ++ ER RR ++ ++L+ALRS+VPNI+K+DKAS+I D++ Y+ +L Q K L+AE+
Sbjct: 53 SKNVVSERNRRQKLNQRLFALRSVVPNISKLDKASVIKDSIDYMQELIDQEKTLEAEIRE 112
Query: 195 LEASLLVSENYQGSINNRIKNVQV---TNNNNPISKKIMQVDM------FQVE------- 238
LE+ + EN + + ++NN+ SKK Q+D + +E
Sbjct: 113 LESRSTLLENPVRDYDCNFAETHLQDFSDNNDMRSKKFKQMDYSTRVQHYPIEVLEMKVT 172
Query: 239 ---ERGYYVKIVCNKGAGVAVSLYRAIESLAGFNVRNTNLATVCDSFVLTFTMNV 290
E+ V I C+K V L + +ESL N+ TN ++ T + V
Sbjct: 173 WMGEKTVVVCITCSKKRETMVQLCKVLESL-NLNILTTNFSSFTSRLSTTLFLQV 226
>AT1G12860.1 | Symbols: SCRM2, ICE2 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr1:4384758-4386392
FORWARD LENGTH=450
Length = 450
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 82/141 (58%), Gaps = 5/141 (3%)
Query: 135 SKTLICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLKAEVAG 194
+K L+ ERRRR ++ ++LY LRS+VP I+KMD+ASI+GDA+ Y+ +L + L E+
Sbjct: 266 AKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHTELES 325
Query: 195 L---EASLLVSENYQGSINNRIKNVQVTNNNNPISK-KIMQVDMFQVEERGYYVKIVCNK 250
+SL +++ R+K +++ P K + +V++ E + + + C +
Sbjct: 326 TPPSSSSLHPLTPTPQTLSYRVKEELCPSSSLPSPKGQQPRVEVRLREGKAVNIHMFCGR 385
Query: 251 GAGVAVSLYRAIESLAGFNVR 271
G+ +S RA+++L G +V+
Sbjct: 386 RPGLLLSTMRALDNL-GLDVQ 405
>AT4G29930.4 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14644108-14645168 FORWARD
LENGTH=184
Length = 184
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 65/102 (63%), Gaps = 3/102 (2%)
Query: 135 SKTLICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLKAEVAG 194
SK ++ ER RR ++ ++L+ALRS+VPNI+K+DKAS+I D++ Y+ +L Q K L+AE+
Sbjct: 53 SKNVVSERNRRQKLNQRLFALRSVVPNISKLDKASVIKDSIDYMQELIDQEKTLEAEIRE 112
Query: 195 LEASLLVSENYQGSINNRIKNVQV---TNNNNPISKKIMQVD 233
LE+ + EN + + ++NN+ SKK Q+D
Sbjct: 113 LESRSTLLENPVRDYDCNFAETHLQDFSDNNDMRSKKFKQMD 154
>AT2G46510.1 | Symbols: ATAIB, AIB | ABA-inducible BHLH-type
transcription factor | chr2:19091187-19092887 REVERSE
LENGTH=566
Length = 566
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 47/60 (78%)
Query: 140 CERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLKAEVAGLEASL 199
ER+RR ++ ++ YALRS+VPNI+KMDKAS++GDA+SY+ +LQ + K ++ E G + SL
Sbjct: 399 AERQRREKLNQRFYALRSVVPNISKMDKASLLGDAISYIKELQEKVKIMEDERVGTDKSL 458
>AT4G17880.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-binding
family protein | chr4:9933702-9935471 REVERSE LENGTH=589
Length = 589
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 89/153 (58%), Gaps = 7/153 (4%)
Query: 140 CERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLKAEVAGLEASL 199
ER+RR ++ ++ Y+LR++VPN++KMDKAS++GDA+SY+ +L+++ +K +++ L+ +
Sbjct: 420 AERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYISELKSKLQKAESDKEELQKQI 479
Query: 200 LVSENYQGSINNRIKNVQVTNNNNPISKKIMQVDMFQVEERGY--YVKIVCNKGAGVAVS 257
V G+ + +K+ + N + + + M+VD+ + G+ ++I C+K
Sbjct: 480 DVMNKEAGNAKSSVKDRKCLNQESSVLIE-MEVDVKII---GWDAMIRIQCSKRNHPGAK 535
Query: 258 LYRAIESLAGFNVRNTNLATVCDSFVLTFTMNV 290
A++ L V + +L+ V D + T+ +
Sbjct: 536 FMEALKEL-DLEVNHASLSVVNDLMIQQATVKM 567
>AT1G01260.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:109595-111367 FORWARD
LENGTH=590
Length = 590
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 80/149 (53%), Gaps = 25/149 (16%)
Query: 140 CERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLKAEVAGLEASL 199
ER+RR ++ ++ YALRS+VPNI+KMDKAS++GDAVSY+++L A+ K ++AE L
Sbjct: 437 AERQRREKLNQRFYALRSVVPNISKMDKASLLGDAVSYINELHAKLKVMEAE----RERL 492
Query: 200 LVSENYQGSINNRIKNVQVTNNNNPISKKIMQVDMFQVEERGYYVKIVCNKGAGVAVSLY 259
S N S+++ I NVQ + + V+I C + A ++
Sbjct: 493 GYSSNPPISLDSDI-NVQTSGED-------------------VTVRINCPLESHPASRIF 532
Query: 260 RAIESLAGFNVRNTNLATVCDSFVLTFTM 288
A E + V N+NL D+ + TF +
Sbjct: 533 HAFEE-SKVEVINSNLEVSQDTVLHTFVV 560
>AT1G01260.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:109595-111367 FORWARD
LENGTH=590
Length = 590
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 80/149 (53%), Gaps = 25/149 (16%)
Query: 140 CERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLKAEVAGLEASL 199
ER+RR ++ ++ YALRS+VPNI+KMDKAS++GDAVSY+++L A+ K ++AE L
Sbjct: 437 AERQRREKLNQRFYALRSVVPNISKMDKASLLGDAVSYINELHAKLKVMEAE----RERL 492
Query: 200 LVSENYQGSINNRIKNVQVTNNNNPISKKIMQVDMFQVEERGYYVKIVCNKGAGVAVSLY 259
S N S+++ I NVQ + + V+I C + A ++
Sbjct: 493 GYSSNPPISLDSDI-NVQTSGED-------------------VTVRINCPLESHPASRIF 532
Query: 260 RAIESLAGFNVRNTNLATVCDSFVLTFTM 288
A E + V N+NL D+ + TF +
Sbjct: 533 HAFEE-SKVEVINSNLEVSQDTVLHTFVV 560
>AT1G01260.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:109595-111367 FORWARD
LENGTH=590
Length = 590
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 80/149 (53%), Gaps = 25/149 (16%)
Query: 140 CERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLKAEVAGLEASL 199
ER+RR ++ ++ YALRS+VPNI+KMDKAS++GDAVSY+++L A+ K ++AE L
Sbjct: 437 AERQRREKLNQRFYALRSVVPNISKMDKASLLGDAVSYINELHAKLKVMEAE----RERL 492
Query: 200 LVSENYQGSINNRIKNVQVTNNNNPISKKIMQVDMFQVEERGYYVKIVCNKGAGVAVSLY 259
S N S+++ I NVQ + + V+I C + A ++
Sbjct: 493 GYSSNPPISLDSDI-NVQTSGED-------------------VTVRINCPLESHPASRIF 532
Query: 260 RAIESLAGFNVRNTNLATVCDSFVLTFTM 288
A E + V N+NL D+ + TF +
Sbjct: 533 HAFEE-SKVEVINSNLEVSQDTVLHTFVV 560
>AT5G46760.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-binding
family protein | chr5:18974231-18976009 FORWARD
LENGTH=592
Length = 592
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 89/156 (57%), Gaps = 9/156 (5%)
Query: 140 CERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLKAEVAGLEASL 199
ER+RR ++ ++ Y+LR++VPN++KMDKAS++GDA+SY+++L+++ ++ +++ ++ L
Sbjct: 419 AERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYINELKSKLQQAESDKEEIQKKL 478
Query: 200 --LVSENYQG-SINNRIKNVQVTNNNNPISKKIMQVDMFQVEERGY--YVKIVCNKGAGV 254
+ E G +R K + +N ++ S M++D+ + G+ +++ C K
Sbjct: 479 DGMSKEGNNGKGCGSRAKERKSSNQDSTASSIEMEIDVKII---GWDVMIRVQCGKKDHP 535
Query: 255 AVSLYRAIESLAGFNVRNTNLATVCDSFVLTFTMNV 290
A++ L V + +L+ V D + T+ +
Sbjct: 536 GARFMEALKEL-DLEVNHASLSVVNDLMIQQATVKM 570
>AT3G26744.4 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr3:9832953-9834790 REVERSE LENGTH=494
Length = 494
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 80/147 (54%), Gaps = 9/147 (6%)
Query: 135 SKTLICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLKAEVAG 194
+K L+ ERRRR ++ ++LY LRS+VP I+KMD+ASI+GDA+ Y+ +L + L E+
Sbjct: 306 AKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELES 365
Query: 195 LEASLL--VSENYQG------SINNRIKNVQVTNNNNPISKKIMQVDMFQVEERGYYVKI 246
L S ++ +++ R+K ++ + +V++ E R + +
Sbjct: 366 TPPGSLPPTSSSFHPLTPTPQTLSCRVKEELCPSSLPSPKGQQARVEVRLREGRAVNIHM 425
Query: 247 VCNKGAGVAVSLYRAIESLAGFNVRNT 273
C + G+ ++ +A+++L G +V+
Sbjct: 426 FCGRRPGLLLATMKALDNL-GLDVQQA 451
>AT3G26744.2 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr3:9832953-9834790 REVERSE LENGTH=494
Length = 494
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 80/147 (54%), Gaps = 9/147 (6%)
Query: 135 SKTLICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLKAEVAG 194
+K L+ ERRRR ++ ++LY LRS+VP I+KMD+ASI+GDA+ Y+ +L + L E+
Sbjct: 306 AKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELES 365
Query: 195 LEASLL--VSENYQG------SINNRIKNVQVTNNNNPISKKIMQVDMFQVEERGYYVKI 246
L S ++ +++ R+K ++ + +V++ E R + +
Sbjct: 366 TPPGSLPPTSSSFHPLTPTPQTLSCRVKEELCPSSLPSPKGQQARVEVRLREGRAVNIHM 425
Query: 247 VCNKGAGVAVSLYRAIESLAGFNVRNT 273
C + G+ ++ +A+++L G +V+
Sbjct: 426 FCGRRPGLLLATMKALDNL-GLDVQQA 451
>AT3G26744.1 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr3:9832953-9834790 REVERSE LENGTH=494
Length = 494
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 80/147 (54%), Gaps = 9/147 (6%)
Query: 135 SKTLICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLKAEVAG 194
+K L+ ERRRR ++ ++LY LRS+VP I+KMD+ASI+GDA+ Y+ +L + L E+
Sbjct: 306 AKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELES 365
Query: 195 LEASLL--VSENYQG------SINNRIKNVQVTNNNNPISKKIMQVDMFQVEERGYYVKI 246
L S ++ +++ R+K ++ + +V++ E R + +
Sbjct: 366 TPPGSLPPTSSSFHPLTPTPQTLSCRVKEELCPSSLPSPKGQQARVEVRLREGRAVNIHM 425
Query: 247 VCNKGAGVAVSLYRAIESLAGFNVRNT 273
C + G+ ++ +A+++L G +V+
Sbjct: 426 FCGRRPGLLLATMKALDNL-GLDVQQA 451
>AT1G10610.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:3506463-3508752 FORWARD
LENGTH=441
Length = 441
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 69/117 (58%), Gaps = 4/117 (3%)
Query: 134 RSKTLICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLKAEVA 193
+SK L ER+RR R+ + +Y LR++VP ITK++K I DAV Y+++L + +KL+ E+
Sbjct: 262 KSKNLHSERKRRERINQAMYGLRAVVPKITKLNKIGIFSDAVDYINELLVEKQKLEDELK 321
Query: 194 G---LEASLLVSENYQGSINNRIKNVQVTNNNNPISKKIMQVDMFQVEERGYYVKIV 247
G +E + +E + + V + +N + K +++++ + ER + +++V
Sbjct: 322 GINEMECKEIAAEEQSAIADPEAERVS-SKSNKRVKKNEVKIEVHETGERDFLIRVV 377
>AT1G32640.1 | Symbols: ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 |
Basic helix-loop-helix (bHLH) DNA-binding family protein
| chr1:11799042-11800913 REVERSE LENGTH=623
Length = 623
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 45/52 (86%)
Query: 140 CERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLKAE 191
ER+RR ++ ++ YALR++VPN++KMDKAS++GDA++Y+++L+++ K ++E
Sbjct: 456 AERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAIAYINELKSKVVKTESE 507
>AT4G21330.1 | Symbols: DYT1 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:11349922-11350694
FORWARD LENGTH=207
Length = 207
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 22/155 (14%)
Query: 134 RSKTLICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLKAEVA 193
+S L ERRRR ++ +L ALRS VP +T M KASI+ DA++Y+ +LQ K L
Sbjct: 30 KSPNLEAERRRREKLHCRLMALRSHVPIVTNMTKASIVEDAITYIGELQNNVKNLLETFH 89
Query: 194 GLEAS-----------LLVSENYQGSINNRIKNVQVTNNNNPISKKIMQVDMFQVEERGY 242
+E + ++ E +N +K + + N V + ++ ER +
Sbjct: 90 EMEEAPPEIDEEQTDPMIKPEVETSDLNEEMKKLGIEEN----------VQLCKIGERKF 139
Query: 243 YVKIVCNKGAGVAVSLYRAIESLAGFNVRNTNLAT 277
++KI+ K G+ + L GF + + +L T
Sbjct: 140 WLKIITEKRDGIFTKFMEVMRFL-GFEIIDISLTT 173
>AT4G16430.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:9267599-9269002 FORWARD
LENGTH=467
Length = 467
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 41/52 (78%)
Query: 140 CERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLKAE 191
ER+RR ++ ++ YALR++VPNI+KMDKAS++ DA++Y+ D+Q + + + E
Sbjct: 324 AERQRREKLNQRFYALRAVVPNISKMDKASLLADAITYITDMQKKIRVYETE 375
>AT2G22750.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:9672145-9673624 FORWARD
LENGTH=305
Length = 305
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 93/163 (57%), Gaps = 16/163 (9%)
Query: 129 KAKSDRSKTLICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKK- 187
+++S+ ++ ER+RR ++ ++ AL +L+P + KMDKAS++GDA+ ++ LQ K+
Sbjct: 119 RSQSNAQDHILAERKRREKLTQRFVALSALIPGLKKMDKASVLGDAIKHIKYLQESVKEY 178
Query: 188 --------LKAEVAGLEASLLVSENYQGSINNRIKNVQVTNNNNPISKKIMQVDMFQVEE 239
+++ V ++SL++ EN+Q S ++ + ++++N + ++++ +V
Sbjct: 179 EEQKKEKTMESVVLVKKSSLVLDENHQPSSSSSSDGNRNSSSSN-----LPEIEV-RVSG 232
Query: 240 RGYYVKIVCNKGAGVAVSLYRAIESLAGFNVRNTNLATVCDSF 282
+ +KI+C K G + + IE L G ++ N+N+ +F
Sbjct: 233 KDVLIKILCEKQKGNVIKIMGEIEKL-GLSITNSNVLPFGPTF 274
>AT2G22750.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:9672145-9673624 FORWARD
LENGTH=304
Length = 304
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 92/163 (56%), Gaps = 16/163 (9%)
Query: 129 KAKSDRSKTLICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQA--- 185
+++S+ ++ ER+RR ++ ++ AL +L+P + KMDKAS++GDA+ ++ LQ
Sbjct: 119 RSQSNAQDHILAERKRREKLTQRFVALSALIPGLKKMDKASVLGDAIKHIKYLQESVKEY 178
Query: 186 ------KKLKAEVAGLEASLLVSENYQGSINNRIKNVQVTNNNNPISKKIMQVDMFQVEE 239
K +++ V ++SL++ EN+Q S ++ + ++++N + ++++ +V
Sbjct: 179 EEQKKEKTMESVVLVKKSSLVLDENHQPSSSSSSDGNRNSSSSN-----LPEIEV-RVSG 232
Query: 240 RGYYVKIVCNKGAGVAVSLYRAIESLAGFNVRNTNLATVCDSF 282
+ +KI+C K G + + IE L G ++ N+N+ +F
Sbjct: 233 KDVLIKILCEKQKGNVIKIMGEIEKL-GLSITNSNVLPFGPTF 274
>AT5G46830.1 | Symbols: ATNIG1, NIG1 | NACL-inducible gene 1 |
chr5:19002719-19004254 FORWARD LENGTH=511
Length = 511
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 62/106 (58%), Gaps = 5/106 (4%)
Query: 140 CERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLKAEVAGLEASL 199
ER RR ++ + YALR++VPN++KMDK S++ DAV Y+++L+++A+ ++ E +E
Sbjct: 347 AERMRREKLNHRFYALRAVVPNVSKMDKTSLLEDAVCYINELKSKAENVELEKHAIEIQF 406
Query: 200 LVSENYQG---SINNRIKNVQVTNNNNPISKKIMQVD--MFQVEER 240
+ G +I + K + + I KIM+ D M +VE R
Sbjct: 407 NELKEIAGQRNAIPSVCKYEEKASEMMKIEVKIMESDDAMVRVESR 452
>AT4G09820.1 | Symbols: TT8, BHLH42 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:6182067-6186261
FORWARD LENGTH=518
Length = 518
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 39/52 (75%)
Query: 138 LICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLK 189
++ ERRRR ++ EK LRS+VP +TKMDK SI+GD ++YV+ L+ + +L+
Sbjct: 365 VVAERRRREKLNEKFITLRSMVPFVTKMDKVSILGDTIAYVNHLRKRVHELE 416
>AT4G37850.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:17796362-17797647 REVERSE
LENGTH=328
Length = 328
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 71/138 (51%), Gaps = 20/138 (14%)
Query: 138 LICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLKAEVAG--L 195
+I ER+RR ++ ++ AL +LVP + KMDKAS++GDA+ ++ LQ + +L+ + L
Sbjct: 154 IIAERKRREKLTQRFVALSALVPGLKKMDKASVLGDALKHIKYLQERVGELEEQKKERRL 213
Query: 196 EASLLVSENYQGSINNRIKNVQVTNNNNPISKK----IMQVDMFQVEER----GYYVKIV 247
E+ +LV ++ + + +NN S +D+ ++E R +KI+
Sbjct: 214 ESMVLVKKS----------KLILDDNNQSFSSSCEDGFSDLDLPEIEVRFSDEDVLIKIL 263
Query: 248 CNKGAGVAVSLYRAIESL 265
C K G + IE L
Sbjct: 264 CEKQKGHLAKIMAEIEKL 281
>AT4G00870.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:362230-363639 REVERSE
LENGTH=423
Length = 423
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 43/59 (72%)
Query: 140 CERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLKAEVAGLEAS 198
E++RR ++ + YALR++VP +++MDKAS++ DAVSY+ L+++ L+ E+ ++ +
Sbjct: 253 AEKQRREKLNHRFYALRAIVPKVSRMDKASLLSDAVSYIESLKSKIDDLETEIKKMKMT 311
>AT5G65640.1 | Symbols: bHLH093 | beta HLH protein 93 |
chr5:26237137-26238904 FORWARD LENGTH=351
Length = 351
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 74/140 (52%), Gaps = 11/140 (7%)
Query: 129 KAKSDRSKTLICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKL 188
K + SK L+ ERRRR R+ ++L LRS+VP I+KMD+ SI+GDA+ Y+ +L + KL
Sbjct: 171 KLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDAIDYMKELLDKINKL 230
Query: 189 KAEVAGLEASLLVSENYQGSINNRIKNVQVTNNNNPISKKIMQVDMFQVEER--GYYVKI 246
+ E E L S N S +++ N N P+ + F+++ R V I
Sbjct: 231 QDE----EQELGNSNNSHHS--KLFGDLKDLNANEPL---VRNSPKFEIDRRDEDTRVDI 281
Query: 247 VCNKGAGVAVSLYRAIESLA 266
C+ G+ +S +E+L
Sbjct: 282 CCSPKPGLLLSTVNTLETLG 301
>AT2G22770.1 | Symbols: NAI1 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr2:9684858-9686321
FORWARD LENGTH=320
Length = 320
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 81/162 (50%), Gaps = 22/162 (13%)
Query: 138 LICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLKAE---VAG 194
++ ER+RR ++ E+L AL +L+P + K DKA+++ DA+ ++ LQ + KKL+ E
Sbjct: 134 VLAERKRRQKLNERLIALSALLPGLKKTDKATVLEDAIKHLKQLQERVKKLEEERVVTKK 193
Query: 195 LEASLLVSENYQ----------GSINNRIKNVQVTNNNNPISKKIMQVDMFQVEERGYYV 244
++ S+++ + Q S + + +++ I K+ M + +V +R +
Sbjct: 194 MDQSIILVKRSQVYLDDDSSSYSSTCSAASPLSSSSDEVSIFKQTMPMIEARVSDRDLLI 253
Query: 245 KIVCNKGAGVAVSLYRAIESLAGFNVRNTNLATVCDSFVLTF 286
++ C K G + + + SL F + V +SF L F
Sbjct: 254 RVHCEKNKGCMIKI---LSSLEKFRLE------VVNSFTLPF 286
>AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 |
chr4:15079489-15081606 REVERSE LENGTH=310
Length = 310
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 7/114 (6%)
Query: 127 QPKAKSDRSKTL----ICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQ 182
+PK ++ R + I ER RR R+ E++ +L+ LVPN K DKAS++ + + YV LQ
Sbjct: 127 KPKVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNKTDKASMLDEIIDYVKFLQ 186
Query: 183 AQAKKLKAEVAG--LEASLLVSENYQGSINNRIKNVQVTNNNNPISKKIMQVDM 234
Q K L G AS +SE+ GS N + + + ++ K+M+ DM
Sbjct: 187 LQVKVLSMSRLGGAASASSQISEDAGGSHENTSSSGEAKMTEHQVA-KLMEEDM 239
>AT2G22760.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:9678012-9679165 FORWARD
LENGTH=295
Length = 295
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 32/161 (19%)
Query: 138 LICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLKAEVAG--- 194
++ ER+RR ++ EK AL +L+P + K DK +I+ DA+S + LQ Q + LK E
Sbjct: 121 VLAERKRREKLSEKFIALSALLPGLKKADKVTILDDAISRMKQLQEQLRTLKEEKEATRQ 180
Query: 195 LEASLLVSE---------NYQGSINNRIKNVQVTNNNNPISKKIMQVDMFQVEERGYYVK 245
+E+ +LV + N S + I+ Q I KI Q D+ ++
Sbjct: 181 MESMILVKKSKVFFDEEPNLSCSPSVHIEFDQALPE---IEAKISQNDIL--------IR 229
Query: 246 IVCNKGAGVAVSLYRAIESLAGFNVRNTNLATVCDSFVLTF 286
I+C K G +++ IE F +R N S VL F
Sbjct: 230 ILCEKSKGCMINILNTIE---NFQLRIEN------SIVLPF 261
>AT5G10570.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:3341357-3342877 FORWARD
LENGTH=315
Length = 315
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 71/138 (51%), Gaps = 16/138 (11%)
Query: 129 KAKSDRSKTLICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKL 188
K + SK L+ ERRRR R+ ++L LRS+VP ITKMD+ SI+GDA+ Y+ +L + KL
Sbjct: 144 KLEGQPSKNLMAERRRRKRLNDRLSLLRSIVPKITKMDRTSILGDAIDYMKELLDKINKL 203
Query: 189 KAEVAGLEASLLVSENYQGSINNRIKNVQVTNNNNPISKKIMQVDMFQVEERGYYVKIVC 248
+ E+ Q +N + +TN + + +VD +V ++ I C
Sbjct: 204 Q-------------EDEQELGSNSHLSTLITNESMVRNSLKFEVDQREV---NTHIDICC 247
Query: 249 NKGAGVAVSLYRAIESLA 266
G+ VS +E+L
Sbjct: 248 PTKPGLVVSTVSTLETLG 265
>AT2G24260.1 | Symbols: LRL1 | LJRHL1-like 1 |
chr2:10319646-10322177 REVERSE LENGTH=350
Length = 350
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 81/183 (44%), Gaps = 17/183 (9%)
Query: 139 ICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLKAEVAGLEAS 198
I ER RR R+ E++ AL+ LVPN K DKAS++ + + YV LQ Q K L G AS
Sbjct: 151 IAERLRRERIAERMKALQELVPNGNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAS 210
Query: 199 LLVSENYQGSINNRIKNVQV------TNNNNPISKKIMQVDMFQVEERGYYVKIVCNKGA 252
+ + G + + V N+N+ ++ QV E+ G ++ + KG
Sbjct: 211 VSSQISEAGGSHGNASSAMVGGSQTAGNSNDSVTMTEHQVAKLMEEDMGSAMQYLQGKGL 270
Query: 253 GV-AVSLYRAIESLAGFNVRNTNLATVCDSFVLTFTMNVKGSEPEINLPNLKLWVTGALL 311
+ +SL AI S A + RN + +V G P NL + + T +
Sbjct: 271 CLMPISLATAI-STATCHSRNP--------LIPGAVADVGGPSPP-NLSGMTIQSTSTKM 320
Query: 312 NQG 314
G
Sbjct: 321 GSG 323
>AT4G36930.1 | Symbols: SPT | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:17414167-17415945
FORWARD LENGTH=373
Length = 373
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 36/50 (72%)
Query: 139 ICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKL 188
+ E+RRR R+ EK+ AL+SL+PN K DKAS++ +A+ Y+ LQ Q + L
Sbjct: 204 LSEKRRRSRINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQML 253
>AT1G63650.3 | Symbols: EGL3 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr1:23599809-23602734
FORWARD LENGTH=596
Length = 596
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 41/63 (65%)
Query: 128 PKAKSDRSKTLICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKK 187
P + + E++RR ++ E+ LRS++P+I+K+DK SI+ D + Y+ DLQ + ++
Sbjct: 397 PDTPEETGNHALSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKRVQE 456
Query: 188 LKA 190
L++
Sbjct: 457 LES 459
>AT1G63650.2 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr1:23599809-23602734 FORWARD LENGTH=596
Length = 596
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 41/63 (65%)
Query: 128 PKAKSDRSKTLICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKK 187
P + + E++RR ++ E+ LRS++P+I+K+DK SI+ D + Y+ DLQ + ++
Sbjct: 397 PDTPEETGNHALSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKRVQE 456
Query: 188 LKA 190
L++
Sbjct: 457 LES 459
>AT1G63650.1 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr1:23599809-23602734 FORWARD LENGTH=596
Length = 596
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 41/63 (65%)
Query: 128 PKAKSDRSKTLICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKK 187
P + + E++RR ++ E+ LRS++P+I+K+DK SI+ D + Y+ DLQ + ++
Sbjct: 397 PDTPEETGNHALSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKRVQE 456
Query: 188 LKA 190
L++
Sbjct: 457 LES 459
>AT1G09530.2 | Symbols: PIF3, POC1, PAP3 | phytochrome interacting
factor 3 | chr1:3077216-3079367 FORWARD LENGTH=524
Length = 524
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 4/59 (6%)
Query: 132 SDRSKTL----ICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAK 186
S RS++ + ERRRR R+ EK+ AL+ L+PN K+DKAS++ +A+ Y+ LQ Q +
Sbjct: 339 SKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQVQ 397
>AT1G09530.1 | Symbols: PIF3, POC1, PAP3 | phytochrome interacting
factor 3 | chr1:3077216-3079367 FORWARD LENGTH=524
Length = 524
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 4/59 (6%)
Query: 132 SDRSKTL----ICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAK 186
S RS++ + ERRRR R+ EK+ AL+ L+PN K+DKAS++ +A+ Y+ LQ Q +
Sbjct: 339 SKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQVQ 397
>AT5G65640.2 | Symbols: bHLH093 | beta HLH protein 93 |
chr5:26237137-26238635 FORWARD LENGTH=290
Length = 290
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 45/67 (67%)
Query: 129 KAKSDRSKTLICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKL 188
K + SK L+ ERRRR R+ ++L LRS+VP I+KMD+ SI+GDA+ Y+ +L + KL
Sbjct: 171 KLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDAIDYMKELLDKINKL 230
Query: 189 KAEVAGL 195
+ E L
Sbjct: 231 QDEEQEL 237
>AT5G41315.1 | Symbols: GL3, MYC6.2 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:16529457-16532866
FORWARD LENGTH=637
Length = 637
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 42/63 (66%)
Query: 128 PKAKSDRSKTLICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKK 187
P+A+ + + E++RR ++ E+ LR ++P+I K+DK SI+ D + Y+ +L+ + ++
Sbjct: 433 PEARDETGNHAVLEKKRREKLNERFMTLRKIIPSINKIDKVSILDDTIEYLQELERRVQE 492
Query: 188 LKA 190
L++
Sbjct: 493 LES 495
>AT5G67110.1 | Symbols: ALC | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:26785332-26786338
REVERSE LENGTH=210
Length = 210
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 35/50 (70%)
Query: 139 ICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKL 188
+ E++RR ++ EK+ AL+ L+PN K DKAS++ +A+ Y+ LQ Q + L
Sbjct: 100 LSEKKRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEYLKQLQLQVQTL 149
>AT2G31220.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:13303014-13304661 FORWARD
LENGTH=458
Length = 458
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 40/61 (65%)
Query: 132 SDRSKTLICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLKAE 191
S +S+T ER RR ++ + L++L+PN TK+D+ASI+G+A+ Y+ +L ++ K
Sbjct: 243 SRKSRTSPTERERRVHFNDRFFDLKNLIPNPTKIDRASIVGEAIDYIKELLRTIEEFKML 302
Query: 192 V 192
V
Sbjct: 303 V 303
>AT5G58010.1 | Symbols: LRL3 | LJRHL1-like 3 |
chr5:23483670-23484889 REVERSE LENGTH=297
Length = 297
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 127 QPKAKSDRSKTL----ICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQ 182
+P+ ++ R + I ER RR R+ E++ +L+ LVPN K DKAS++ + + YV LQ
Sbjct: 96 KPRVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNKTDKASMLDEIIEYVRFLQ 155
Query: 183 AQAKKL 188
Q K L
Sbjct: 156 LQVKVL 161
>AT2G46810.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:19239694-19242373 FORWARD
LENGTH=371
Length = 371
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 88/175 (50%), Gaps = 14/175 (8%)
Query: 131 KSDRSKTLICERRRRGRMKEKLYALRSLVPN--ITKMDKASIIGDAVSYVHDLQAQAKKL 188
+S R + ER RR +M L +LRS++P+ I + D+ASI+G A+ +V L+ Q + L
Sbjct: 189 ESQRMTHIAVERNRRRQMNVHLNSLRSIIPSSYIQRGDQASIVGGAIDFVKILEQQLQSL 248
Query: 189 KAEVAGLEASLLVSENYQGSINNRIKNVQVTNNNNPISKKIMQVDMFQVE----ERGYYV 244
+A+ ++ Q +N ++N +++N S K Q ++E E +
Sbjct: 249 EAQKRSQQSD---DNKEQIPEDNSLRN--ISSNKLRASNKEEQSSKLKIEATVIESHVNL 303
Query: 245 KIVCNKGAGVAVSLYRAIESLAGFNVRNTNLATVCDSFVLTFTMNVKGSEPEINL 299
KI C + G + +E L F V + N+ + ++ V +++ N+K E E NL
Sbjct: 304 KIQCTRKQGQLLRSIILLEKL-RFTVLHLNITSPTNTSV-SYSFNLKM-EDECNL 355
>AT5G43175.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:17334261-17335234 FORWARD
LENGTH=223
Length = 223
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 39/58 (67%)
Query: 142 RRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLKAEVAGLEASL 199
R+RR R+ ++L L+SLVPN TK+D ++++ DAV YV LQ Q K L +E + A L
Sbjct: 148 RKRRERINDRLKTLQSLVPNGTKVDISTMLEDAVHYVKFLQLQIKLLSSEDLWMYAPL 205
>AT2G31215.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:13299807-13300302 FORWARD
LENGTH=129
Length = 129
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 12/91 (13%)
Query: 132 SDRSKTLICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLKAE 191
S +S+T + ER RR ++ + L++L+PN TK +ASI+ D + Y+++LQ +LK
Sbjct: 19 SKKSRTFLTERERRALFNDRFFDLKNLIPNPTKGGEASIVQDGIVYINELQRLVSELK-- 76
Query: 192 VAGLEASLLVSENYQGSINNRIKNVQVTNNN 222
LV + G+ +N N++V N N
Sbjct: 77 -------YLVEKKKCGARHN---NIEVDNKN 97
>AT3G21330.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:7507720-7508841 FORWARD
LENGTH=373
Length = 373
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
Query: 127 QPKAKSDRSKT---LICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQA 183
+PK K+ + T + R+RR R+ EK+ L++LVP TKMD AS++ +A +Y+ L+A
Sbjct: 267 KPKRKNVKISTDPQTVAARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRA 326
Query: 184 QAKKLK 189
Q K L+
Sbjct: 327 QVKALE 332
>AT4G38070.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:17876535-17882569 FORWARD
LENGTH=1513
Length = 1513
Score = 49.3 bits (116), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 41/67 (61%), Gaps = 5/67 (7%)
Query: 127 QPKAKSDRSKTLI-----CERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDL 181
+PK+K++ + ERRRR R+ + LR+++PN+ K DKAS++G+ V Y ++L
Sbjct: 1338 KPKSKTESKEVAAKKHSDAERRRRLRINSQFATLRTILPNLVKQDKASVLGETVRYFNEL 1397
Query: 182 QAQAKKL 188
+ + +
Sbjct: 1398 KKMVQDI 1404
>AT1G06170.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:1885146-1886564 REVERSE
LENGTH=420
Length = 420
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 132 SDRSKTLICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDL 181
S + K ER RR K++ L++L+PN TK D+ASI+G+A+ Y+ +L
Sbjct: 212 SKKRKIFPTERERRVHFKDRFGDLKNLIPNPTKNDRASIVGEAIDYIKEL 261
>AT1G06170.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:1885146-1886564 REVERSE
LENGTH=420
Length = 420
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 132 SDRSKTLICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDL 181
S + K ER RR K++ L++L+PN TK D+ASI+G+A+ Y+ +L
Sbjct: 212 SKKRKIFPTERERRVHFKDRFGDLKNLIPNPTKNDRASIVGEAIDYIKEL 261
>AT2G31210.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:13296655-13298139 FORWARD
LENGTH=428
Length = 428
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 37/56 (66%)
Query: 134 RSKTLICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLK 189
++K ER RR + E+ AL+ L+P+ +K D+ASI+ D + Y+++L+ + +LK
Sbjct: 212 KNKPFTTERERRCHLNERYEALKLLIPSPSKGDRASILQDGIDYINELRRRVSELK 267