Miyakogusa Predicted Gene

Lj2g3v3315590.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7KEH9_MEDTR 601 82.1 89.3 (tr|G7KEH9) WD repeat-containing protein OS=Medicago truncatula GN=MTR_5g096040 PE=4 SV=1
TAIR_pep AT5G63010.1 423 58.4 74.3 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:25281739-25282967 FORWARD LENGTH=343
Medicago Medtr5g096040.1 601 82.1 89.3 | transducin/WD-like repeat-protein | HC | chr5:41988385-41993880 | 20130731
Soybean Glyma09g09140.1 598 81.8 89.0  
LJGI gnl|LJGI|TC74142 394 99.5 99.5 similar to UniRef100_A7PCX2 Cluster: Chromosome chr17 scaffold_12, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr17 scaffold_12, whole genome shotgun sequence - Vitis vinifera (Grape), partial (15%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v3315590.1 length: 346 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.047 170-194
205-240
293-338
HMMSmart SM00320 WD40 0.93 115-149
154-194
200-240
290-339
ProfileScan PS50082 WD_REPEATS_2 10.575 207-243
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 2.2e-31 9-342
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 12.341 161-249
superfamily SSF50978 WD40 1.5e-34 8-339
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 227-241
no_ID  
HMMPanther PTHR22850 WD40 3.1e-90 6-340
HMMPanther PTHR22850:SF17 RETINOBLASTOMA-BINDING 3.1e-90 6-340
Wolf-PSORT
Lj2g3v3315590.1	cyto 7, nucl 3, chlo 1, vacu 1, cysk 1, golg 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v3315590.1