Miyakogusa Predicted Gene

Lj2g3v3315590.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3315590.1 CUFF.39975.1
         (346 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G63010.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...   423   e-119
AT2G32950.1 | Symbols: COP1, ATCOP1, DET340, FUS1, EMB168 | Tran...    56   4e-08
AT4G29830.1 | Symbols: VIP3 | Transducin/WD40 repeat-like superf...    54   2e-07

>AT5G63010.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr5:25281739-25282967 FORWARD LENGTH=343
          Length = 343

 Score =  423 bits (1088), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/346 (58%), Positives = 257/346 (74%), Gaps = 10/346 (2%)

Query: 1   MDVAHCYLDGNADAVEFCSHDSNRDFLAASTYTLHEGDQPSRYGSISLFNI-DVETSHFD 59
           MD A CYL+GNADAVEFC H+S  + LAASTYTL EGD PSR GS+ LF++ DVE    +
Sbjct: 1   MDAADCYLEGNADAVEFCPHESYANLLAASTYTLQEGDCPSRSGSVYLFDVGDVEDVGLN 60

Query: 60  MVYSEETCGIFDIKWNPPAGHVNLFLAQADADGYLRIKTLEGGCDAAQGVHLKEMTSEKI 119
           ++   +T G+FDI+W+      ++ LAQADADG L +  ++   +      L+E++ ++I
Sbjct: 61  LIQKIDTAGVFDIRWSRGGDGGDVALAQADADGCLIVYKID---ETESKGTLREVSGKRI 117

Query: 120 SNYMCLYLDWNPSATSITVGLSDGSVSIVSLLESKLEIQEEWKAHDFELWTTCFDIHQPN 179
           S+ MCL LDW+PS+TSI VGLSDGS S+VS  +S LE  +EWK HDFELWT  FD++ PN
Sbjct: 118 SSSMCLCLDWDPSSTSIVVGLSDGSASVVSFTDSNLETVQEWKGHDFELWTASFDLNNPN 177

Query: 180 LVYTGSDDCKFSCWDLRDGPS-KRVFQNSKAHKMGVCCIQKSPHDPNSLLTGSYDEFLRV 238
           LVYTGSDDCKFSCWD+RD P+  RVFQNSK H MGVCCI  +P DP S+ TGSYDE LRV
Sbjct: 178 LVYTGSDDCKFSCWDIRDSPADNRVFQNSKVHTMGVCCISSNPSDPYSIFTGSYDETLRV 237

Query: 239 WDVRSILKPINEISISLGGGVWRVKHHPFVPGLVLAACMHNGFAIVSIKGDKAEVLETYK 298
           WD RS+ +P+NE S+SLGGGVWR+KHHP + G+VLAACMHNGFA+  +   K EVLE+Y 
Sbjct: 238 WDTRSVSRPLNETSVSLGGGVWRIKHHPSLSGVVLAACMHNGFALAKVSDGKGEVLESYN 297

Query: 299 KHDSLAYGADWHKGEASQIGGRTKPLVATCSFYDKLVRLWRPENDI 344
           KH SLAYGADW++G+  +     + +VATCSFYD+L+R+W P  D 
Sbjct: 298 KHHSLAYGADWYRGKDQK-----QSVVATCSFYDRLLRVWMPITDF 338


>AT2G32950.1 | Symbols: COP1, ATCOP1, DET340, FUS1, EMB168 |
           Transducin/WD40 repeat-like superfamily protein |
           chr2:13978000-13983282 FORWARD LENGTH=675
          Length = 675

 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 160 EWKAHDFELWTTCFDIHQPNLVYTGSDDCKFSCWDLRDGPSKRVFQNSKAHKMGVCCIQK 219
           E++ H+   W+  F   +P+++ +GSDDCK   W  R   S          K  +CC++ 
Sbjct: 458 EYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVKVWCTRQEASVINID----MKANICCVKY 513

Query: 220 SPHDPNSLLTGSYDEFLRVWDVRSILKPINEIS 252
           +P   N +  GS D  +  +D+R+I +P++  S
Sbjct: 514 NPGSSNYIAVGSADHHIHYYDLRNISQPLHVFS 546


>AT4G29830.1 | Symbols: VIP3 | Transducin/WD40 repeat-like
           superfamily protein | chr4:14597728-14599157 FORWARD
           LENGTH=321
          Length = 321

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 6/123 (4%)

Query: 120 SNYMCLYLDWNPSATSITVGLSDGSVSIVSLLESKLEIQEEWKAHDFELWTTCFDIHQPN 179
           S    L + W+P+   +  G  DG++ +  +  SKL  Q E   H+  + +  F    P 
Sbjct: 157 SKKFVLSVAWSPNGKRLACGSMDGTICVFDVDRSKLLHQLE--GHNMPVRSLVFSPVDPR 214

Query: 180 LVYTGSDDCKFSCWDLRDGPSKRVFQNSKAHKMGVCCIQKSPHDPNSLLTGSYDEFLRVW 239
           ++++GSDD      ++ D   K +  +   H   V  +  SP D  ++ TGS D  +R+W
Sbjct: 215 VLFSGSDDGHV---NMHDAEGKTLLGSMSGHTSWVLSVDASP-DGGAIATGSSDRTVRLW 270

Query: 240 DVR 242
           D++
Sbjct: 271 DLK 273