Miyakogusa Predicted Gene
- Lj2g3v3315590.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v3315590.1 CUFF.39975.1
(346 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g096040.1 | transducin/WD-like repeat-protein | HC | chr5:... 601 e-172
Medtr2g016160.2 | peroxisomal targeting signal type 2 receptor |... 57 4e-08
Medtr2g016160.1 | peroxisomal targeting signal type 2 receptor |... 57 4e-08
Medtr5g085250.2 | E3 ubiquitin-protein ligase COP1 | HC | chr5:3... 55 9e-08
Medtr5g085250.3 | E3 ubiquitin-protein ligase COP1 | HC | chr5:3... 55 9e-08
Medtr5g085250.1 | E3 ubiquitin-protein ligase COP1 | HC | chr5:3... 55 1e-07
Medtr4g125710.1 | transducin/WD-like repeat-protein | HC | chr4:... 49 7e-06
Medtr1g089260.1 | U3 small nucleolar RNA-associated protein, put... 49 7e-06
>Medtr5g096040.1 | transducin/WD-like repeat-protein | HC |
chr5:41988385-41993880 | 20130731
Length = 421
Score = 601 bits (1549), Expect = e-172, Method: Compositional matrix adjust.
Identities = 284/346 (82%), Positives = 309/346 (89%)
Query: 1 MDVAHCYLDGNADAVEFCSHDSNRDFLAASTYTLHEGDQPSRYGSISLFNIDVETSHFDM 60
MDVAHCYL+GNADAVEFC HD + + LAASTYTL EGDQPSR GSISLFNID +T FD
Sbjct: 74 MDVAHCYLEGNADAVEFCPHDRHHNVLAASTYTLQEGDQPSRSGSISLFNIDADTGKFDT 133
Query: 61 VYSEETCGIFDIKWNPPAGHVNLFLAQADADGYLRIKTLEGGCDAAQGVHLKEMTSEKIS 120
VYSEET GIFDIKWNPPAG+++ FL QADADGYLRIK L+G D QG +LKE+TSEK+S
Sbjct: 134 VYSEETSGIFDIKWNPPAGNISPFLGQADADGYLRIKMLDGCSDGIQGANLKEITSEKVS 193
Query: 121 NYMCLYLDWNPSATSITVGLSDGSVSIVSLLESKLEIQEEWKAHDFELWTTCFDIHQPNL 180
N MCLYLDWNP++TSITVGLSDGSVSIVSL ESKLEIQEEWKAHDFELWTT FDIHQPNL
Sbjct: 194 NSMCLYLDWNPASTSITVGLSDGSVSIVSLHESKLEIQEEWKAHDFELWTTSFDIHQPNL 253
Query: 181 VYTGSDDCKFSCWDLRDGPSKRVFQNSKAHKMGVCCIQKSPHDPNSLLTGSYDEFLRVWD 240
VYTGSDDCKF CWDLRD PSK VF+NSK HKMGV CI+KSPHDPN+LLTGSYDEFLRVWD
Sbjct: 254 VYTGSDDCKFCCWDLRDSPSKLVFKNSKVHKMGVTCIEKSPHDPNTLLTGSYDEFLRVWD 313
Query: 241 VRSILKPINEISISLGGGVWRVKHHPFVPGLVLAACMHNGFAIVSIKGDKAEVLETYKKH 300
+RSI KP+NE SISLGGGVWRVKHHPF+ GLVLAACMHNGFAIV+IKGDKAEVLETYKKH
Sbjct: 314 LRSISKPVNETSISLGGGVWRVKHHPFIQGLVLAACMHNGFAIVAIKGDKAEVLETYKKH 373
Query: 301 DSLAYGADWHKGEASQIGGRTKPLVATCSFYDKLVRLWRPENDIML 346
DSLAYGADW KGEA+ G +KP+VATCSFYDKLVR+WRP NDI +
Sbjct: 374 DSLAYGADWQKGEANHTKGSSKPVVATCSFYDKLVRVWRPCNDINI 419
>Medtr2g016160.2 | peroxisomal targeting signal type 2 receptor | HC
| chr2:4893425-4894823 | 20130731
Length = 318
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 123/277 (44%), Gaps = 26/277 (9%)
Query: 68 GIFDIKWNPPAGHVNLFLAQADADGYLRIKTLEGGCDAAQGVHLKEMTSEKISNYMCLYL 127
GI+D+ W+ H ++ +A A ADG +++ L + E T E S +
Sbjct: 63 GIYDVTWS--ESHDSITVA-AVADGSVKLYDLALPPTSNPIRSFHEHTREVHS------V 113
Query: 128 DWNP-SATSITVGLSDGSVSIVSLLESKLEIQEEWKAHDFELWTTCFDIHQPNLVYTGSD 186
D+NP S D +V + ++ + +K H + ++++ ++ ++ + S
Sbjct: 114 DYNPVRRDSFLSAAWDDTVKLWTV--DRPTSVRTFKEHAYCVYSSVWNPRHADVFASASG 171
Query: 187 DCKFSCWDLRDGPSKRVFQNSKAHKMGVCCIQKSPHDPNSLLTGSYDEFLRVWDVRSILK 246
DC WD+R+ S + AH+ + + +D + TGS D+ ++VWDVRS
Sbjct: 172 DCTVRIWDVREPGSTMIL---PAHEHEILSCDWNKYDECIIATGSVDKSVKVWDVRSYRV 228
Query: 247 PINEISISLGGGVWRVKHHPFVPGLVLAACMHNGFAIVSIKGDKAEVLETYKKHDSLAYG 306
P+ ++ G V +VK P V L L +C ++ V + ++ Y H A G
Sbjct: 229 PVAVLN-GHGYAVRKVKFSPHVRNL-LVSCSYDMTVCVWDFMVEDALVSRYDHHTEFAVG 286
Query: 307 ADWHKGEASQIGGRTKPLVATCSFYDKLVRLWRPEND 343
D + + L+A+ +D+LV +W+ D
Sbjct: 287 VD--------MSVLVEGLLASTG-WDELVYVWQHGTD 314
>Medtr2g016160.1 | peroxisomal targeting signal type 2 receptor | HC
| chr2:4893425-4894823 | 20130731
Length = 318
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 123/277 (44%), Gaps = 26/277 (9%)
Query: 68 GIFDIKWNPPAGHVNLFLAQADADGYLRIKTLEGGCDAAQGVHLKEMTSEKISNYMCLYL 127
GI+D+ W+ H ++ +A A ADG +++ L + E T E S +
Sbjct: 63 GIYDVTWS--ESHDSITVA-AVADGSVKLYDLALPPTSNPIRSFHEHTREVHS------V 113
Query: 128 DWNP-SATSITVGLSDGSVSIVSLLESKLEIQEEWKAHDFELWTTCFDIHQPNLVYTGSD 186
D+NP S D +V + ++ + +K H + ++++ ++ ++ + S
Sbjct: 114 DYNPVRRDSFLSAAWDDTVKLWTV--DRPTSVRTFKEHAYCVYSSVWNPRHADVFASASG 171
Query: 187 DCKFSCWDLRDGPSKRVFQNSKAHKMGVCCIQKSPHDPNSLLTGSYDEFLRVWDVRSILK 246
DC WD+R+ S + AH+ + + +D + TGS D+ ++VWDVRS
Sbjct: 172 DCTVRIWDVREPGSTMIL---PAHEHEILSCDWNKYDECIIATGSVDKSVKVWDVRSYRV 228
Query: 247 PINEISISLGGGVWRVKHHPFVPGLVLAACMHNGFAIVSIKGDKAEVLETYKKHDSLAYG 306
P+ ++ G V +VK P V L L +C ++ V + ++ Y H A G
Sbjct: 229 PVAVLN-GHGYAVRKVKFSPHVRNL-LVSCSYDMTVCVWDFMVEDALVSRYDHHTEFAVG 286
Query: 307 ADWHKGEASQIGGRTKPLVATCSFYDKLVRLWRPEND 343
D + + L+A+ +D+LV +W+ D
Sbjct: 287 VD--------MSVLVEGLLASTG-WDELVYVWQHGTD 314
>Medtr5g085250.2 | E3 ubiquitin-protein ligase COP1 | HC |
chr5:36796040-36807238 | 20130731
Length = 573
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 106/261 (40%), Gaps = 28/261 (10%)
Query: 2 DVAHCYLDGNADAVEFCSHDSNRD--FLAASTYTLHEGDQPS---RYGSISLFNIDVETS 56
D+ CYL A + RD F++ Y+ D S + S + E
Sbjct: 202 DLQECYLQKRRQAADKPHGQQERDTNFISREGYSGGLDDFQSVLTTFTRYSRLRVIAEIR 261
Query: 57 HFDMVYSEETCGIFDIKWNPPAGHVNLFLAQADADGYLRIKTLEGGCDAAQGVH--LKEM 114
H D+ +S + + +LF A A +++ + H + EM
Sbjct: 262 HGDIFHSANIVSSIEFDRDD-----DLF-ATAGVSRRIKVFDFSAVVNEPTDAHCPVVEM 315
Query: 115 TSEKISNYMCLYLDWNPSATS-ITVGLSDGSVSI--VSLLESKLEIQEEWKAHDFELWTT 171
T+ S CL WN A + I +G V++ V+ +S +E +E H+ W+
Sbjct: 316 TTR--SKLSCL--SWNKYAKNQIASSDYEGIVTVWDVTTRKSLMEYEE----HEKRAWSV 367
Query: 172 CFDIHQPNLVYTGSDDCKFSCWDLRDGPSKRVFQNSKAHKMGVCCIQKSPHDPNSLLTGS 231
F P+++ +GSDDCK W S K +CC++ +P N + GS
Sbjct: 368 DFSRTDPSMLVSGSDDCKVKVWCTNQEASVLNID----MKANICCVKYNPGSGNYIAVGS 423
Query: 232 YDEFLRVWDVRSILKPINEIS 252
D + +D+R+I +P++ S
Sbjct: 424 ADHHIHYYDLRNISRPVHVFS 444
>Medtr5g085250.3 | E3 ubiquitin-protein ligase COP1 | HC |
chr5:36796040-36807238 | 20130731
Length = 540
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 106/261 (40%), Gaps = 28/261 (10%)
Query: 2 DVAHCYLDGNADAVEFCSHDSNRD--FLAASTYTLHEGDQPS---RYGSISLFNIDVETS 56
D+ CYL A + RD F++ Y+ D S + S + E
Sbjct: 169 DLQECYLQKRRQAADKPHGQQERDTNFISREGYSGGLDDFQSVLTTFTRYSRLRVIAEIR 228
Query: 57 HFDMVYSEETCGIFDIKWNPPAGHVNLFLAQADADGYLRIKTLEGGCDAAQGVH--LKEM 114
H D+ +S + + +LF A A +++ + H + EM
Sbjct: 229 HGDIFHSANIVSSIEFDRDD-----DLF-ATAGVSRRIKVFDFSAVVNEPTDAHCPVVEM 282
Query: 115 TSEKISNYMCLYLDWNPSATS-ITVGLSDGSVSI--VSLLESKLEIQEEWKAHDFELWTT 171
T+ S CL WN A + I +G V++ V+ +S +E +E H+ W+
Sbjct: 283 TTR--SKLSCL--SWNKYAKNQIASSDYEGIVTVWDVTTRKSLMEYEE----HEKRAWSV 334
Query: 172 CFDIHQPNLVYTGSDDCKFSCWDLRDGPSKRVFQNSKAHKMGVCCIQKSPHDPNSLLTGS 231
F P+++ +GSDDCK W S K +CC++ +P N + GS
Sbjct: 335 DFSRTDPSMLVSGSDDCKVKVWCTNQEASVLNID----MKANICCVKYNPGSGNYIAVGS 390
Query: 232 YDEFLRVWDVRSILKPINEIS 252
D + +D+R+I +P++ S
Sbjct: 391 ADHHIHYYDLRNISRPVHVFS 411
>Medtr5g085250.1 | E3 ubiquitin-protein ligase COP1 | HC |
chr5:36796022-36807260 | 20130731
Length = 677
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 106/261 (40%), Gaps = 28/261 (10%)
Query: 2 DVAHCYLDGNADAVEFCSHDSNRD--FLAASTYTLHEGDQPS---RYGSISLFNIDVETS 56
D+ CYL A + RD F++ Y+ D S + S + E
Sbjct: 306 DLQECYLQKRRQAADKPHGQQERDTNFISREGYSGGLDDFQSVLTTFTRYSRLRVIAEIR 365
Query: 57 HFDMVYSEETCGIFDIKWNPPAGHVNLFLAQADADGYLRIKTLEGGCDAAQGVH--LKEM 114
H D+ +S + + +LF A A +++ + H + EM
Sbjct: 366 HGDIFHSANIVSSIEFDRDD-----DLF-ATAGVSRRIKVFDFSAVVNEPTDAHCPVVEM 419
Query: 115 TSEKISNYMCLYLDWNPSATS-ITVGLSDGSVSI--VSLLESKLEIQEEWKAHDFELWTT 171
T+ S CL WN A + I +G V++ V+ +S +E +E H+ W+
Sbjct: 420 TTR--SKLSCL--SWNKYAKNQIASSDYEGIVTVWDVTTRKSLMEYEE----HEKRAWSV 471
Query: 172 CFDIHQPNLVYTGSDDCKFSCWDLRDGPSKRVFQNSKAHKMGVCCIQKSPHDPNSLLTGS 231
F P+++ +GSDDCK W S K +CC++ +P N + GS
Sbjct: 472 DFSRTDPSMLVSGSDDCKVKVWCTNQEASVLNID----MKANICCVKYNPGSGNYIAVGS 527
Query: 232 YDEFLRVWDVRSILKPINEIS 252
D + +D+R+I +P++ S
Sbjct: 528 ADHHIHYYDLRNISRPVHVFS 548
>Medtr4g125710.1 | transducin/WD-like repeat-protein | HC |
chr4:52171409-52168341 | 20130731
Length = 321
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
Query: 120 SNYMCLYLDWNPSATSITVGLSDGSVSIVSLLESKLEIQEEWKAHDFELWTTCFDIHQPN 179
S L + W+P + G DG++S+ + +K E H + + + + P
Sbjct: 157 SKKFVLSVAWSPDGKRLACGSMDGTISVFDVQRAKFLHHLE--GHFMPVRSLVYSPYDPR 214
Query: 180 LVYTGSDDCKFSCWDLRDGPSKRVFQNSKAHKMGVCCIQKSPHDPNSLLTGSYDEFLRVW 239
L+++ SDD +D K + H V C+ SP D ++ TGS D +R+W
Sbjct: 215 LLFSASDDGNVHMYDAE---GKALVGTMSGHASWVLCVDVSP-DGAAIATGSSDRTVRLW 270
Query: 240 DV 241
D+
Sbjct: 271 DL 272
>Medtr1g089260.1 | U3 small nucleolar RNA-associated protein,
putative | HC | chr1:40006446-40004460 | 20130731
Length = 530
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 183 TGSDDCKFSCWDLRDGPSKRVFQNSKAHKMGVCCIQKSPHDPNSLLTGSYDEFLRVWDVR 242
+GSDD WD+ + VF + HK V C SP +S +TGSYD F++VWDVR
Sbjct: 145 SGSDDAVVRYWDVAEETPFMVF---RGHKDYVRCGDSSPVSSDSFVTGSYDHFVKVWDVR 201