| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| TrEMBL | I1NCU5_SOYBN | 671 | 73.4 | 77.6 | (tr|I1NCU5) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep | AT2G43970.1 | 346 | 54.9 | 66.3 | | Symbols: | RNA-binding protein | chr2:18205535-18208031 REVERSE LENGTH=545 |
| Medicago | Medtr7g117595.1 | 523 | 75.0 | 80.4 | | LA-related protein 6 LA RNA-binding domain protein, putative | HC | chr7:48763422-48774734 | 20130731 |
| Soybean | Glyma19g45320.3 | 671 | 73.4 | 77.6 | |
| LJGI | gnl|LJGI|TC60367 | 1697 | 100.0 | 100.0 | similar to UniRef100_A7QB10 Cluster: Chromosome chr5 scaffold_72, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_72, whole genome shotgun sequence - Vitis vinifera (Grape), partial (46%) |
| Lj1g3v5062760.1 | length: 445 aa. | |||
| IPR000504 | RNA recognition motif domain | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| Molecular Function | GO:0003676 | nucleic acid binding | ||
| ProfileScan | PS50102 | RRM | 8.979 | 217-314 |
| IPR002344 | Lupus La protein | |||
| Molecular Function | GO:0003723 | RNA binding | ||
| Cellular Component | GO:0005634 | nucleus | ||
| Biological Process | GO:0006396 | RNA processing | ||
| Cellular Component | GO:0030529 | ribonucleoprotein complex | ||
| FPrintScan | PR00302 | LUPUSLA | 9.2e-09 | 132-149 158-173 189-202 274-292 |
| IPR006630 | RNA-binding protein Lupus La | |||
| HMMPfam | PF05383 | La | 6.6e-21 | 129-188 |
| HMMSmart | SM00715 | Domain | 1.1e-34 | 123-203 |
| ProfileScan | PS50961 | HTH_LA | 24.116 | 119-210 |
| IPR011991 | Winged helix-turn-helix DNA-binding domain | |||
| Gene3D | G3DSA:1.10.10.10 | no description | 9.6e-26 | 121-206 |
| IPR012677 | Nucleotide-binding, alpha-beta plait | |||
| Molecular Function | GO:0000166 | nucleotide binding | ||
| Gene3D | G3DSA:3.30.70.330 | no description | 1.4e-09 | 209-311 |
| no_ID | ||||
| HMMPanther | PTHR22792 | LUPUS | 1.3e-120 | 15-396 |
| HMMPanther | PTHR22792:SF26 | LA-RELATED | 1.3e-120 | 15-396 |
| Seg | seg | seg | NA | 17-27 64-77 373-389 |
| superfamily | SSF46785 | "Winged | 9.2e-26 | 116-207 |
| superfamily | SSF54928 | RNA-binding | 1.2e-09 | 175-330 |
Lj1g3v5062760.1 nucl 9, cyto 2, chlo 1, vacu 1, pero 1, cyto_E.R. 1, cyto_plas 1
| entry_id | prediction | score | sppta | spptna | fp | profile |
|---|---|---|---|---|---|---|
| Lj1g3v5062760.1 |