Miyakogusa Predicted Gene

Lj1g3v1077840.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JRC1_SOYBN 2676 74.6 81.7 (tr|I1JRC1) DNA polymerase OS=Glycine max PE=3 SV=2
TAIR_pep AT1G67500.1 1347 64.9 75.9 | Symbols: ATREV3, REV3 | recovery protein 3 | chr1:25287707-25296714 REVERSE LENGTH=1890
Medicago Medtr7g113380.3 2614 72.7 80.9 | DNA polymerase family protein | HC | chr7:46698259-46685022 | 20130731
Soybean Glyma03g39720.1 2456 69.5 76.2  
LJGI gnl|LJGI|FS355548 940 100.0 100.0 similar to UniRef100_A7PS77 Cluster: DNA polymerase; n=1; Vitis vinifera|Rep: DNA polymerase - Vitis vinifera (Grape), partial (8%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v1077840.1 length: 1777 aa.
IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain
method AccNumber shortName E-value location
Molecular Function GO:0003887 DNA-directed DNA polymerase activity    
Biological Process GO:0006260 DNA replication    
HMMPfam PF03104 DNA_pol_B_exo1 2.1e-08 942-1104
IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003887 DNA-directed DNA polymerase activity    
Biological Process GO:0006260 DNA replication    
HMMPfam PF00136 DNA_pol_B 1.6e-92 1211-1652
IPR006172 DNA-directed DNA polymerase, family B
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0003887 DNA-directed DNA polymerase activity    
Biological Process GO:0006139 nucleobase-containing compound metabolic process    
FPrintScan PR00106 DNAPOLB 3.6e-09 1263-1276
1372-1384
1428-1436
HMMSmart SM00486 DNA 1.3e-101 936-1442
IPR012337 Ribonuclease H-like domain
Molecular Function GO:0003676 nucleic acid binding    
superfamily SSF53098 Ribonuclease 4.8e-49 937-1227
IPR017964 DNA-directed DNA polymerase, family B, conserved site
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0003887 DNA-directed DNA polymerase activity    
Biological Process GO:0006139 nucleobase-containing compound metabolic process    
PatternScan PS00116 DNA_POLYMERASE_B NA 1430-1438
IPR023211 DNA polymerase, palm domain
Gene3D G3DSA:3.90.1600.10 no description 1.8e-13 1395-1507
IPR025687 C4-type zinc-finger of DNA polymerase delta
HMMPfam PF14260 zf-C4pol 1.3e-10 1696-1769
no_ID  
Gene3D G3DSA:1.10.287.690 no description 3.7e-06 1334-1385
Gene3D G3DSA:3.30.420.10 no description 3.2e-52 1095-1210
HMMPanther PTHR10322 DNA 0 936-1776
HMMPanther PTHR10322:SF5 DNA 0 936-1776
Seg seg seg NA 503-518
538-549
641-656
1047-1056
1718-1725
superfamily SSF56672 DNA/RNA 3.4e-117 1211-1679
Wolf-PSORT
Lj1g3v1077840.1	nucl 6, chlo 3, cysk 2, chlo_mito 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v1077840.1