Miyakogusa Predicted Gene
- Lj1g3v1077840.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1077840.1 tr|I1JRC1|I1JRC1_SOYBN DNA polymerase OS=Glycine
max GN=Gma.42484 PE=3 SV=1,71.51,0,DNA POLYMERASE ZETA CATALYTIC
SUBUNIT,NULL; DNA POLYMERASE CATALYTIC SUBUNIT,NULL; no
description,NU,NODE_51870_length_5412_cov_10.384331.path1.1
(1777 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G67500.1 | Symbols: ATREV3, REV3 | recovery protein 3 | chr1:... 1347 0.0
AT1G67500.2 | Symbols: REV3 | recovery protein 3 | chr1:25287707... 1345 0.0
AT5G63960.1 | Symbols: EMB2780 | DNA binding;nucleotide binding;... 302 2e-81
AT5G63960.2 | Symbols: EMB2780 | DNA binding;nucleotide binding;... 295 2e-79
AT5G67100.1 | Symbols: ICU2 | DNA-directed DNA polymerases | chr... 124 6e-28
>AT1G67500.1 | Symbols: ATREV3, REV3 | recovery protein 3 |
chr1:25287707-25296714 REVERSE LENGTH=1890
Length = 1890
Score = 1347 bits (3486), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 674/1039 (64%), Positives = 789/1039 (75%), Gaps = 50/1039 (4%)
Query: 772 LHLDEDSCHEMPGNALDV-FLPISARDSQEEIETQNKYVTIKTNRSNGTR-GVATHYQND 829
+H E E GN+ D+ F P+ D++EE K + GT G+ H+ ND
Sbjct: 847 IHAREKQHDEYEGNSNDIPFFPL--EDNKEE----------KKHFFQGTSLGIPLHHLND 894
Query: 830 GSPLYLLTPNILPPSVGSVQRWLLCDERD---DKDKPQCASGHLIGPKLNQDAGAEKKPL 886
GS LYLLTP PPSV SV +W+ D+ D D +K H D + +
Sbjct: 895 GSNLYLLTPAFSPPSVDSVLQWISNDKGDSNIDSEKQPLRDNHNDRGASFTDLASASNVV 954
Query: 887 CINEGQTERVKACLND---------------------------SQDISQISGPDGKSSST 919
++E + +N SQ++SQISGPDGKS T
Sbjct: 955 SVSEHVEQHNNLFVNSESNAYTESEIDLKPKGTFLNLNLQASVSQELSQISGPDGKSGPT 1014
Query: 920 PLSQKGFRDPASIGCGQQLTLLSIEVLAESRGDLLPNPQFDGVNIIALGFQNDSDSVIGV 979
PLSQ GFRDPAS+G GQQLT+LSIEV AESRGDL P+P+FD VN+IAL QND V V
Sbjct: 1015 PLSQMGFRDPASMGAGQQLTILSIEVHAESRGDLRPDPRFDSVNVIALVVQNDDSFVAEV 1074
Query: 980 VVLLHTKSVPFQRSLDGLSGCKILIFTNEKHLFKEFIKIVSSSDPDILIGWDIQGSSLGF 1039
VLL + QR++DGLSGCK+ +F E+ LF+ FI+ + DPD+L+GWDIQG S+GF
Sbjct: 1075 FVLLFSPDSIDQRNVDGLSGCKLSVFLEERQLFRYFIETLCKWDPDVLLGWDIQGGSIGF 1134
Query: 1040 LAERASHXXXXXXXXXXRTPTDSCITSEDIKTSEKGMLELDFPDTPSVDCGVQEISIIED 1099
LAERA+ RTP+ + + D K L PD + E +IED
Sbjct: 1135 LAERAAQLGIRFLNNISRTPSPTTTNNSDNKRKLGNNL---LPDPLVANPAQVEEVVIED 1191
Query: 1100 EWGRTHASGVHVGGRIVLNVWRLVRGEVKLNLYSVEAVAEAVLRRKIPLIHHKVLTKWYS 1159
EWGRTHASGVHVGGRIVLN WRL+RGEVKLN+Y++EAV+EAVLR+K+P I +KVLT+W+S
Sbjct: 1192 EWGRTHASGVHVGGRIVLNAWRLIRGEVKLNMYTIEAVSEAVLRQKVPSIPYKVLTEWFS 1251
Query: 1160 SGPGRARYQCIKYVVERAKLNLEILNQLDMVNRTSELARVFGIDFFSVLSRGSQYRVESM 1219
SGP ARY+CI+YV+ RA LNLEI++QLDM+NRTSELARVFGIDFFSVLSRGSQYRVESM
Sbjct: 1252 SGPAGARYRCIEYVIRRANLNLEIMSQLDMINRTSELARVFGIDFFSVLSRGSQYRVESM 1311
Query: 1220 FLRLAHSQNYLAISPGNQQVASQPAMECLPLVMEPESGFYSDPVVVLDFQSLYPSMIIAY 1279
LRLAH+QNYLAISPGNQQVASQPAMEC+PLVMEPES FY DPV+VLDFQSLYPSMIIAY
Sbjct: 1312 LLRLAHTQNYLAISPGNQQVASQPAMECVPLVMEPESAFYDDPVIVLDFQSLYPSMIIAY 1371
Query: 1280 NLCFCTCLGKVMTSKANTLGVSSFSPEQHVLQDLKDQILLTPNGVMFVPNKVRRGVLPRL 1339
NLCF TCLGK+ K NTLGVSS+S + VLQDL +QIL TPN VM+VP +VRRG+LPRL
Sbjct: 1372 NLCFSTCLGKLAHLKMNTLGVSSYSLDLDVLQDL-NQILQTPNSVMYVPPEVRRGILPRL 1430
Query: 1340 LEEILSTRIMVKQAMKKLSSSEQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAEL 1399
LEEILSTRIMVK+AMKKL+ SE VL RIFNARQLALKLI+NVTYGYTAAGFSGRMPCAEL
Sbjct: 1431 LEEILSTRIMVKKAMKKLTPSEAVLHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAEL 1490
Query: 1400 ADSIVQCGRRTLERAISFVNLHEKWNAKVIYGDTDSMFVLLKGRTIKESFQIGGEIASAI 1459
ADSIVQCGR TLE+AISFVN ++ WNA+V+YGDTDSMFVLLKGRT+KE+F +G EIASAI
Sbjct: 1491 ADSIVQCGRSTLEKAISFVNANDNWNARVVYGDTDSMFVLLKGRTVKEAFVVGQEIASAI 1550
Query: 1460 TSMNPNPVTLKMEKVYHGCFLLTKKRYVGYSYESPDQIEPVFDAKGIETVRRDTCGAVAK 1519
T MNP+PVTLKMEKVYH CFLLTKKRYVGYSYESP+Q EP+FDAKGIETVRRDTC AVAK
Sbjct: 1551 TEMNPHPVTLKMEKVYHPCFLLTKKRYVGYSYESPNQREPIFDAKGIETVRRDTCEAVAK 1610
Query: 1520 TLEQSLRLFFEHQDLLEVKTYLQRQWKRILSGRFSLKDFIFAKEVRLGTYRARISS-LPP 1578
T+EQSLRLFFE +++ +VK+YL RQWKRILSGR SL+DFIFAKEVRLGTY R SS LPP
Sbjct: 1611 TMEQSLRLFFEQKNISKVKSYLYRQWKRILSGRVSLQDFIFAKEVRLGTYSTRDSSLLPP 1670
Query: 1579 AAIVATKAMRVDPRAEPRYGERIPYVVIHGEPGARLVDMVVDPLEVLAIDSPFRMNDLYY 1638
AAIVATK+M+ DPR EPRY ER+PYVVIHGEPGARLVDMVVDPL +L +D+P+R+NDLYY
Sbjct: 1671 AAIVATKSMKADPRTEPRYAERVPYVVIHGEPGARLVDMVVDPLVLLDVDTPYRLNDLYY 1730
Query: 1639 INKQIIPALQRVFGLVGADLNLWFAEMPRPIREASAKHTF-TPNSHRTRIDYYYLSKHCV 1697
INKQIIPALQRVFGLVGADLN WF EMPR R + + + NSH+TRIDY+YLSKHC+
Sbjct: 1731 INKQIIPALQRVFGLVGADLNQWFLEMPRLTRSSLGQRPLNSKNSHKTRIDYFYLSKHCI 1790
Query: 1698 LCGALVQASTHLCNQCSENKXXXXXXXXCKTSKLEQEMQHLVSICHHCGGGDRLLESSVK 1757
LCG +VQ S LCN+C +NK KTSKLE+EMQHL +IC HCGGGD +++S VK
Sbjct: 1791 LCGEVVQESAQLCNRCLQNKSAAAATIVWKTSKLEREMQHLATICRHCGGGDWVVQSGVK 1850
Query: 1758 CTSISCLVFYERRKVQKEL 1776
C S++C VFYERRKVQKEL
Sbjct: 1851 CNSLACSVFYERRKVQKEL 1869
Score = 257 bits (657), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 185/529 (34%), Positives = 268/529 (50%), Gaps = 51/529 (9%)
Query: 1 MGHLHLSKIRFRHPIPDSSR-KKFNTDS-QHRKADSDAIACLESK--------LWISSMI 50
MGH+H+SK++FR P+P R ++F+ D ++ D AI S +W S I
Sbjct: 185 MGHVHISKMKFRSPVPHHFRPRRFDLDDCPGQRIDEVAITKANSSAAASVSFPVWSLSTI 244
Query: 51 PLDWMWSPPSEFDA----SSNDKAHCPKRQSICELEGDTSVDEILNQQFKMYSSLSQTRS 106
P WMW+ E D S + H +RQS+CELEGD + +ILNQQFKMY+SLSQ +S
Sbjct: 245 PGQWMWNLSEESDTPLSQSQHRHQHHYRRQSLCELEGDATSSDILNQQFKMYNSLSQAQS 304
Query: 107 DVNMVQSLVPIWEELQKRTGIHGAIMPPDPGKPHPEDVMKLLSVGLDLDKKLFELCSEAE 166
D NMVQSLV IWEE +RTG+H A +PPDPGKP DV++ +S + L E+ ++ E
Sbjct: 305 DTNMVQSLVAIWEEEYERTGVHDAPIPPDPGKPSAADVLQTMSDYVGFGNMLKEMLNKVE 364
Query: 167 --------TSLFCTPSDKFRETDI---------IGSASP-PASLCKNAKFREEGIDSSLK 208
T++ D + +I +G+ S PAS + G S
Sbjct: 365 LSPPGMKPTAVSSAGPDMHAKPEITDLQALNHMVGTCSEFPAS----EQLSPLGEKSEEA 420
Query: 209 LLTVDEMQSSEKIGTLDVKVADKDAQNLLKWLATSQAAEDINSDDELVCETILSPLLPAA 268
+ DE + ++ D +A L KW A+SQAAEDINSDDE++ ETILSPLLP A
Sbjct: 421 SMENDEYMKTPTDRDTPAQIQDAEALGLFKWFASSQAAEDINSDDEILRETILSPLLPLA 480
Query: 269 TIDEVLEKASMTYESESQKECQDILDSVDDMLELELPKENPSCSSDHNHPVEASSNSMIP 328
+I++VLE AS Y S+SQKECQDILDS +++ + + S+ + + SS+
Sbjct: 481 SINKVLEMASTDYVSQSQKECQDILDSQENLPDFGSSTKRALPSNPDSQNLRTSSDKQSL 540
Query: 329 QVDGSNDEEFSRPGASSLAGTSSSVDINSENKRASGHHNHVRHDTDTSNVSKDKK--NKQ 386
+++ ++D P +S+ G S + + R S H + + SK K N
Sbjct: 541 EIEVASD----VPDSSTSNGASEN---SFRRYRKSDLHTSEVMEYKNRSFSKSNKPSNSV 593
Query: 387 WGSLPFTMTGKVNNDGEHANLYATHPFESETGGYAHSDYLTKNGVRNNACILRNMSKGAS 446
WG LPFT+T + D + N + G S Y N ++
Sbjct: 594 WGPLPFTLTKNLQKDFDSTNA------SDKLGLTKISSYPMNEMTDNYIVPVKEHQADVC 647
Query: 447 DSNEEHGLVSCSLRDLMRRKRSYRVEHDECESGTTKKLLLDRHKGSNTC 495
++ + + L CSLRDLMR+KR E + ++K+ RH N C
Sbjct: 648 NTIDRNVLAGCSLRDLMRKKRLCHGESPVSQHMKSRKVRDSRHGEKNEC 696
>AT1G67500.2 | Symbols: REV3 | recovery protein 3 |
chr1:25287707-25296714 REVERSE LENGTH=1916
Length = 1916
Score = 1345 bits (3480), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 674/1039 (64%), Positives = 789/1039 (75%), Gaps = 50/1039 (4%)
Query: 772 LHLDEDSCHEMPGNALDV-FLPISARDSQEEIETQNKYVTIKTNRSNGTR-GVATHYQND 829
+H E E GN+ D+ F P+ D++EE K + GT G+ H+ ND
Sbjct: 873 IHAREKQHDEYEGNSNDIPFFPL--EDNKEE----------KKHFFQGTSLGIPLHHLND 920
Query: 830 GSPLYLLTPNILPPSVGSVQRWLLCDERD---DKDKPQCASGHLIGPKLNQDAGAEKKPL 886
GS LYLLTP PPSV SV +W+ D+ D D +K H D + +
Sbjct: 921 GSNLYLLTPAFSPPSVDSVLQWISNDKGDSNIDSEKQPLRDNHNDRGASFTDLASASNVV 980
Query: 887 CINEGQTERVKACLND---------------------------SQDISQISGPDGKSSST 919
++E + +N SQ++SQISGPDGKS T
Sbjct: 981 SVSEHVEQHNNLFVNSESNAYTESEIDLKPKGTFLNLNLQASVSQELSQISGPDGKSGPT 1040
Query: 920 PLSQKGFRDPASIGCGQQLTLLSIEVLAESRGDLLPNPQFDGVNIIALGFQNDSDSVIGV 979
PLSQ GFRDPAS+G GQQLT+LSIEV AESRGDL P+P+FD VN+IAL QND V V
Sbjct: 1041 PLSQMGFRDPASMGAGQQLTILSIEVHAESRGDLRPDPRFDSVNVIALVVQNDDSFVAEV 1100
Query: 980 VVLLHTKSVPFQRSLDGLSGCKILIFTNEKHLFKEFIKIVSSSDPDILIGWDIQGSSLGF 1039
VLL + QR++DGLSGCK+ +F E+ LF+ FI+ + DPD+L+GWDIQG S+GF
Sbjct: 1101 FVLLFSPDSIDQRNVDGLSGCKLSVFLEERQLFRYFIETLCKWDPDVLLGWDIQGGSIGF 1160
Query: 1040 LAERASHXXXXXXXXXXRTPTDSCITSEDIKTSEKGMLELDFPDTPSVDCGVQEISIIED 1099
LAERA+ RTP+ + + D K L PD + E +IED
Sbjct: 1161 LAERAAQLGIRFLNNISRTPSPTTTNNSDNKRKLGNNL---LPDPLVANPAQVEEVVIED 1217
Query: 1100 EWGRTHASGVHVGGRIVLNVWRLVRGEVKLNLYSVEAVAEAVLRRKIPLIHHKVLTKWYS 1159
EWGRTHASGVHVGGRIVLN WRL+RGEVKLN+Y++EAV+EAVLR+K+P I +KVLT+W+S
Sbjct: 1218 EWGRTHASGVHVGGRIVLNAWRLIRGEVKLNMYTIEAVSEAVLRQKVPSIPYKVLTEWFS 1277
Query: 1160 SGPGRARYQCIKYVVERAKLNLEILNQLDMVNRTSELARVFGIDFFSVLSRGSQYRVESM 1219
SGP ARY+CI+YV+ RA LNLEI++QLDM+NRTSELARVFGIDFFSVLSRGSQYRVESM
Sbjct: 1278 SGPAGARYRCIEYVIRRANLNLEIMSQLDMINRTSELARVFGIDFFSVLSRGSQYRVESM 1337
Query: 1220 FLRLAHSQNYLAISPGNQQVASQPAMECLPLVMEPESGFYSDPVVVLDFQSLYPSMIIAY 1279
LRLAH+QNYLAISPGNQQVASQPAMEC+PLVMEPES FY DPV+VLDFQSLYPSMIIAY
Sbjct: 1338 LLRLAHTQNYLAISPGNQQVASQPAMECVPLVMEPESAFYDDPVIVLDFQSLYPSMIIAY 1397
Query: 1280 NLCFCTCLGKVMTSKANTLGVSSFSPEQHVLQDLKDQILLTPNGVMFVPNKVRRGVLPRL 1339
NLCF TCLGK+ K NTLGVSS+S + VLQDL +QIL TPN VM+VP +VRRG+LPRL
Sbjct: 1398 NLCFSTCLGKLAHLKMNTLGVSSYSLDLDVLQDL-NQILQTPNSVMYVPPEVRRGILPRL 1456
Query: 1340 LEEILSTRIMVKQAMKKLSSSEQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAEL 1399
LEEILSTRIMVK+AMKKL+ SE VL RIFNARQLALKLI+NVTYGYTAAGFSGRMPCAEL
Sbjct: 1457 LEEILSTRIMVKKAMKKLTPSEAVLHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAEL 1516
Query: 1400 ADSIVQCGRRTLERAISFVNLHEKWNAKVIYGDTDSMFVLLKGRTIKESFQIGGEIASAI 1459
ADSIVQCGR TLE+AISFVN ++ WNA+V+YGDTDSMFVLLKGRT+KE+F +G EIASAI
Sbjct: 1517 ADSIVQCGRSTLEKAISFVNANDNWNARVVYGDTDSMFVLLKGRTVKEAFVVGQEIASAI 1576
Query: 1460 TSMNPNPVTLKMEKVYHGCFLLTKKRYVGYSYESPDQIEPVFDAKGIETVRRDTCGAVAK 1519
T MNP+PVTLKMEKVYH CFLLTKKRYVGYSYESP+Q EP+FDAKGIETVRRDTC AVAK
Sbjct: 1577 TEMNPHPVTLKMEKVYHPCFLLTKKRYVGYSYESPNQREPIFDAKGIETVRRDTCEAVAK 1636
Query: 1520 TLEQSLRLFFEHQDLLEVKTYLQRQWKRILSGRFSLKDFIFAKEVRLGTYRARISS-LPP 1578
T+EQSLRLFFE +++ +VK+YL RQWKRILSGR SL+DFIFAKEVRLGTY R SS LPP
Sbjct: 1637 TMEQSLRLFFEQKNISKVKSYLYRQWKRILSGRVSLQDFIFAKEVRLGTYSTRDSSLLPP 1696
Query: 1579 AAIVATKAMRVDPRAEPRYGERIPYVVIHGEPGARLVDMVVDPLEVLAIDSPFRMNDLYY 1638
AAIVATK+M+ DPR EPRY ER+PYVVIHGEPGARLVDMVVDPL +L +D+P+R+NDLYY
Sbjct: 1697 AAIVATKSMKADPRTEPRYAERVPYVVIHGEPGARLVDMVVDPLVLLDVDTPYRLNDLYY 1756
Query: 1639 INKQIIPALQRVFGLVGADLNLWFAEMPRPIREASAKHTF-TPNSHRTRIDYYYLSKHCV 1697
INKQIIPALQRVFGLVGADLN WF EMPR R + + + NSH+TRIDY+YLSKHC+
Sbjct: 1757 INKQIIPALQRVFGLVGADLNQWFLEMPRLTRSSLGQRPLNSKNSHKTRIDYFYLSKHCI 1816
Query: 1698 LCGALVQASTHLCNQCSENKXXXXXXXXCKTSKLEQEMQHLVSICHHCGGGDRLLESSVK 1757
LCG +VQ S LCN+C +NK KTSKLE+EMQHL +IC HCGGGD +++S VK
Sbjct: 1817 LCGEVVQESAQLCNRCLQNKSAAAATIVWKTSKLEREMQHLATICRHCGGGDWVVQSGVK 1876
Query: 1758 CTSISCLVFYERRKVQKEL 1776
C S++C VFYERRKVQKEL
Sbjct: 1877 CNSLACSVFYERRKVQKEL 1895
Score = 244 bits (622), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 186/555 (33%), Positives = 270/555 (48%), Gaps = 77/555 (13%)
Query: 1 MGHLHLSKIRFRHPIPDSSR-KKFNTDS-QHRKADSDAIACLESK--------LWISSMI 50
MGH+H+SK++FR P+P R ++F+ D ++ D AI S +W S I
Sbjct: 185 MGHVHISKMKFRSPVPHHFRPRRFDLDDCPGQRIDEVAITKANSSAAASVSFPVWSLSTI 244
Query: 51 PLDWMWSPPSEFDA----SSNDKAHCPKRQSICELEGD---------------------- 84
P WMW+ E D S + H +RQS+CELEGD
Sbjct: 245 PGQWMWNLSEESDTPLSQSQHRHQHHYRRQSLCELEGDATSSGNFPDSKFNCLCFMYDRT 304
Query: 85 ----TSVDEILNQQFKMYSSLSQTRSDVNMVQSLVPIWEELQKRTGIHGAIMPPDPGKPH 140
+S+ +ILNQQFKMY+SLSQ +SD NMVQSLV IWEE +RTG+H A +PPDPGKP
Sbjct: 305 FELASSLVDILNQQFKMYNSLSQAQSDTNMVQSLVAIWEEEYERTGVHDAPIPPDPGKPS 364
Query: 141 PEDVMKLLSVGLDLDKKLFELCSEAE--------TSLFCTPSDKFRETDI---------I 183
DV++ +S + L E+ ++ E T++ D + +I +
Sbjct: 365 AADVLQTMSDYVGFGNMLKEMLNKVELSPPGMKPTAVSSAGPDMHAKPEITDLQALNHMV 424
Query: 184 GSASP-PASLCKNAKFREEGIDSSLKLLTVDEMQSSEKIGTLDVKVADKDAQNLLKWLAT 242
G+ S PAS + G S + DE + ++ D +A L KW A+
Sbjct: 425 GTCSEFPAS----EQLSPLGEKSEEASMENDEYMKTPTDRDTPAQIQDAEALGLFKWFAS 480
Query: 243 SQAAEDINSDDELVCETILSPLLPAATIDEVLEKASMTYESESQKECQDILDSVDDMLEL 302
SQAAEDINSDDE++ ETILSPLLP A+I++VLE AS Y S+SQKECQDILDS +++ +
Sbjct: 481 SQAAEDINSDDEILRETILSPLLPLASINKVLEMASTDYVSQSQKECQDILDSQENLPDF 540
Query: 303 ELPKENPSCSSDHNHPVEASSNSMIPQVDGSNDEEFSRPGASSLAGTSSSVDINSENKRA 362
+ S+ + + SS+ +++ ++D P +S+ G S + + R
Sbjct: 541 GSSTKRALPSNPDSQNLRTSSDKQSLEIEVASD----VPDSSTSNGASEN---SFRRYRK 593
Query: 363 SGHHNHVRHDTDTSNVSKDKK--NKQWGSLPFTMTGKVNNDGEHANLYATHPFESETGGY 420
S H + + SK K N WG LPFT+T + D + N + G
Sbjct: 594 SDLHTSEVMEYKNRSFSKSNKPSNSVWGPLPFTLTKNLQKDFDSTNA------SDKLGLT 647
Query: 421 AHSDYLTKNGVRNNACILRNMSKGASDSNEEHGLVSCSLRDLMRRKRSYRVEHDECESGT 480
S Y N ++ ++ + + L CSLRDLMR+KR E +
Sbjct: 648 KISSYPMNEMTDNYIVPVKEHQADVCNTIDRNVLAGCSLRDLMRKKRLCHGESPVSQHMK 707
Query: 481 TKKLLLDRHKGSNTC 495
++K+ RH N C
Sbjct: 708 SRKVRDSRHGEKNEC 722
>AT5G63960.1 | Symbols: EMB2780 | DNA binding;nucleotide
binding;nucleic acid binding;DNA-directed DNA
polymerases;DNA-directed DNA polymerases |
chr5:25599597-25606672 FORWARD LENGTH=1095
Length = 1095
Score = 302 bits (773), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 229/815 (28%), Positives = 371/815 (45%), Gaps = 79/815 (9%)
Query: 977 IGVVVLLHTKSVPFQRSLDGLSGCK------ILIFTNEKHLFKEFIKIVSSSDPDILIGW 1030
I +V L + PF R++ L C ++ F E+ + + ++ DPDI+IG+
Sbjct: 333 IANLVTLQGEDHPFVRNVMTLKSCAPIVGVDVMSFETEREVLLAWRDLIRDVDPDIIIGY 392
Query: 1031 DIQGSSLGFLAERASHXXXXXXXXXXRTPTDSCITSEDIKTSEKGMLELDFPDTPSVDCG 1090
+I L +L ERA+ R +K S
Sbjct: 393 NICKFDLPYLIERAATLGIEEFPLLGR-----------VKNSR---------------VR 426
Query: 1091 VQEISIIEDEWGRTHASGVHVGGRIVLNVWRLVRGEVKLNLYSVEAVAEAVLRRKIPLIH 1150
V++ + + G + + GR ++ + + + KL+ YS+ +V+ L + +H
Sbjct: 427 VRDSTFSSRQQGIRESKETTIEGRFQFDLIQAIHRDHKLSSYSLNSVSAHFLSEQKEDVH 486
Query: 1151 HKVLTKWYSSGPGRARYQCIKYVVERAKLNLEILNQLDMVNRTSELARVFGIDFFSVLSR 1210
H ++T +G R + Y ++ A L +L++L + E+ARV G+ +L+R
Sbjct: 487 HSIITDL-QNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLAR 545
Query: 1211 GSQYRVESMFLRLAHSQNYLAISPGNQQVASQPAMECLPLVMEPESGFYSDPVVVLDFQS 1270
G +V S LR +N + P +Q S+ V+E +GFY P+ LDF S
Sbjct: 546 GQSIKVLSQLLRKGKQKNL--VLPNAKQSGSEQGTYEGATVLEARTGFYEKPIATLDFAS 603
Query: 1271 LYPSMIIAYNLCFCTCLGKVMTSKANTLGVSSFSPEQHVLQDLKDQILLTPNGVMFVPNK 1330
LYPS+++AYNLC+CT + K N P +HV + TP+G FV
Sbjct: 604 LYPSIMMAYNLCYCTLVTPEDVRKLNL-------PPEHVTK--------TPSGETFVKQT 648
Query: 1331 VRRGVLPRLLEEILSTRIMVKQAMKKLSSSEQVLQR-IFNARQLALKLISNVTYGYTAAG 1389
+++G+LP +LEE+L+ R K+A L ++ L++ + + RQLALK+ +N YG+T A
Sbjct: 649 LQKGILPEILEELLTAR---KRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGAT 705
Query: 1390 FSGRMPCAELADSIVQCGRRTLERAISFVNLH------EKWNAKVIYGDTDSMFVLLKGR 1443
G++PC E++ S+ GR+ +E+ V ++NA+VIYGDTDS+ V
Sbjct: 706 V-GQLPCLEISSSVTSYGRQMIEQTKKLVEDKFTTLGGYQYNAEVIYGDTDSVMVQFGVS 764
Query: 1444 TIKESFQIGGEIASAITSMNPNPVTLKMEKVYHGCFLLTKKRYVGYSYESPDQIEPVFDA 1503
++ + +G E A I+ P+ L+ EKVY L+ KKRY G + +P Q + + D
Sbjct: 765 DVEAAMTLGREAAEHISGTFIKPIKLEFEKVYFPYLLINKKRYAGLLWTNPQQFDKM-DT 823
Query: 1504 KGIETVRRDTCGAVAKTLEQSLRLFFEHQDLLEVKTYLQRQWKRILSGRFSLKDFIFAKE 1563
KGIETVRRD C V + +SL +D+ +++ +L R L + K
Sbjct: 824 KGIETVRRDNCLLVKNLVTESLNKILIDRDVPGAAENVKKTISDLLMNRIDLSLLVITKG 883
Query: 1564 VRLGTYRARISSLPPAAIVATKAMRVDPRAEPRYGERIPYVVIHGEPGARLVDMVVDPLE 1623
+ + S +A + + D P G+R+PYV+I GA+ + DP+
Sbjct: 884 LTKTGDDYEVKS--AHGELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIY 941
Query: 1624 VLAIDSPFRMNDLYYINKQIIPALQRVFG--LVGADLNLWFAEMPRPIREASAKHTFTPN 1681
VL + P N YY+ QI L R+F L A L R I + T
Sbjct: 942 VLQNNIPIDPN--YYLENQISKPLLRIFEPVLKNASKELLHGSHTRSI-------SITTP 992
Query: 1682 SHRTRIDYYYLSKHCVLCGALVQASTHLCNQCSENKXXXXXXXXCKTSKLEQEMQHLVSI 1741
S+ + + CV C + T LC C + + ++LE+ L +
Sbjct: 993 SNSGIMKFAKKQLSCVGCKVPISNGT-LCASCKGREAELYCKNVSQVAELEEVFGRLWTQ 1051
Query: 1742 CHHCGGGDRLLESSVKCTSISCLVFYERRKVQKEL 1776
C C G L V CTS C +FY R K QK++
Sbjct: 1052 CQECQGS---LHQDVLCTSRDCPIFYRRMKAQKDM 1083
>AT5G63960.2 | Symbols: EMB2780 | DNA binding;nucleotide
binding;nucleic acid binding;DNA-directed DNA
polymerases;DNA-directed DNA polymerases |
chr5:25599597-25606672 FORWARD LENGTH=1112
Length = 1112
Score = 295 bits (755), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 236/837 (28%), Positives = 377/837 (45%), Gaps = 98/837 (11%)
Query: 974 DSVIGV--VVLLHTKSVPFQRSLDGLSGCK------ILIFTNEKHLF----------KEF 1015
D VI + +V L + PF R++ L C ++ F E+ + +
Sbjct: 328 DPVIQIANLVTLQGEDHPFVRNVMTLKSCAPIVGVDVMSFETEREVLLAWRVLFLPLHYY 387
Query: 1016 IKIVSSS-------DPDILIGWDIQGSSLGFLAERASHXXXXXXXXXXRTPTDSCITSED 1068
I I SSS DPDI+IG++I L +L ERA+ R
Sbjct: 388 ICITSSSSDLIRDVDPDIIIGYNICKFDLPYLIERAATLGIEEFPLLGR----------- 436
Query: 1069 IKTSEKGMLELDFPDTPSVDCGVQEISIIEDEWGRTHASGVHVGGRIVLNVWRLVRGEVK 1128
+K S V++ + + G + + GR ++ + + + K
Sbjct: 437 VKNSR---------------VRVRDSTFSSRQQGIRESKETTIEGRFQFDLIQAIHRDHK 481
Query: 1129 LNLYSVEAVAEAVLRRKIPLIHHKVLTKWYSSGPGRARYQCIKYVVERAKLNLEILNQLD 1188
L+ YS+ +V+ L + +HH ++T +G R + Y ++ A L +L++L
Sbjct: 482 LSSYSLNSVSAHFLSEQKEDVHHSIITDL-QNGNAETRRRLAVYCLKDAYLPQRLLDKLM 540
Query: 1189 MVNRTSELARVFGIDFFSVLSRGSQYRVESMFLRLAHSQNYLAISPGNQQVASQPAMECL 1248
+ E+ARV G+ +L+RG +V S LR +N + P +Q S+
Sbjct: 541 FIYNYVEMARVTGVPISFLLARGQSIKVLSQLLRKGKQKNL--VLPNAKQSGSEQGTYEG 598
Query: 1249 PLVMEPESGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVMTSKANTLGVSSFSPEQH 1308
V+E +GFY P+ LDF SLYPS+++AYNLC+CT + K N P +H
Sbjct: 599 ATVLEARTGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDVRKLNL-------PPEH 651
Query: 1309 VLQDLKDQILLTPNGVMFVPNKVRRGVLPRLLEEILSTRIMVKQAMKKLSSSEQVLQR-I 1367
V + TP+G FV +++G+LP +LEE+L+ R K+A L ++ L++ +
Sbjct: 652 VTK--------TPSGETFVKQTLQKGILPEILEELLTAR---KRAKADLKEAKDPLEKAV 700
Query: 1368 FNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRRTLERAISFVNLH------ 1421
+ RQLALK+ +N YG+T A G++PC E++ S+ GR+ +E+ V
Sbjct: 701 LDGRQLALKISANSVYGFTGATV-GQLPCLEISSSVTSYGRQMIEQTKKLVEDKFTTLGG 759
Query: 1422 EKWNAKVIYGDTDSMFVLLKGRTIKESFQIGGEIASAITSMNPNPVTLKMEKVYHGCFLL 1481
++NA+VIYGDTDS+ V ++ + +G E A I+ P+ L+ EKVY L+
Sbjct: 760 YQYNAEVIYGDTDSVMVQFGVSDVEAAMTLGREAAEHISGTFIKPIKLEFEKVYFPYLLI 819
Query: 1482 TKKRYVGYSYESPDQIEPVFDAKGIETVRRDTCGAVAKTLEQSLRLFFEHQDLLEVKTYL 1541
KKRY G + +P Q + + D KGIETVRRD C V + +SL +D+ +
Sbjct: 820 NKKRYAGLLWTNPQQFDKM-DTKGIETVRRDNCLLVKNLVTESLNKILIDRDVPGAAENV 878
Query: 1542 QRQWKRILSGRFSLKDFIFAKEVRLGTYRARISSLPPAAIVATKAMRVDPRAEPRYGERI 1601
++ +L R L + K + + S +A + + D P G+R+
Sbjct: 879 KKTISDLLMNRIDLSLLVITKGLTKTGDDYEVKS--AHGELAERMRKRDAATAPNVGDRV 936
Query: 1602 PYVVIHGEPGARLVDMVVDPLEVLAIDSPFRMNDLYYINKQIIPALQRVFG--LVGADLN 1659
PYV+I GA+ + DP+ VL + P N YY+ QI L R+F L A
Sbjct: 937 PYVIIKAAKGAKAYERSEDPIYVLQNNIPIDPN--YYLENQISKPLLRIFEPVLKNASKE 994
Query: 1660 LWFAEMPRPIREASAKHTFTPNSHRTRIDYYYLSKHCVLCGALVQASTHLCNQCSENKXX 1719
L R I + T S+ + + CV C + T LC C +
Sbjct: 995 LLHGSHTRSI-------SITTPSNSGIMKFAKKQLSCVGCKVPISNGT-LCASCKGREAE 1046
Query: 1720 XXXXXXCKTSKLEQEMQHLVSICHHCGGGDRLLESSVKCTSISCLVFYERRKVQKEL 1776
+ ++LE+ L + C C G L V CTS C +FY R K QK++
Sbjct: 1047 LYCKNVSQVAELEEVFGRLWTQCQECQGS---LHQDVLCTSRDCPIFYRRMKAQKDM 1100
>AT5G67100.1 | Symbols: ICU2 | DNA-directed DNA polymerases |
chr5:26776994-26785104 FORWARD LENGTH=1524
Length = 1524
Score = 124 bits (311), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 176/719 (24%), Positives = 299/719 (41%), Gaps = 148/719 (20%)
Query: 998 SGCKILIFTN-EKHLFKEFIKIVSSSDPDILIGWDIQGSSLGFLAERASHXXXXXXXXXX 1056
+GC +L N E+ L ++ D DIL+G +I G L L +RA
Sbjct: 638 NGCNVLSIENSERALLNRLFLELNKLDSDILVGHNISGFDLDVLLQRAQ----------- 686
Query: 1057 RTPTDSCITSEDIKTSEKGMLELDFPDTPSVDCGVQEISIIEDEWGRTHASGVH--VGGR 1114
+C + S+ G L+ F P + +G G+ + GR
Sbjct: 687 -----ACKVQSSM-WSKIGRLKRSF--MPKLKGN--------SNYGSGATPGLMSCIAGR 730
Query: 1115 IVLNVWRLVRGEVKLNLYSVEAVAEAVLRRKIPLIHHKVLTKWYSSGPGRARYQCIKYVV 1174
++ + R +K YS+ +++ L R I + K + S + + I+
Sbjct: 731 LLCDTDLCSRDLLKEVSYSLTDLSKTQLNRDRKEIAPNDIPKMFQSS--KTLVELIECGE 788
Query: 1175 ERAKLNLEILNQLDMVNRTSELARVFGIDFFSVLSRGSQYRVESMFLRLAHSQNYLAISP 1234
A L++E++ L ++ T +L + G + L R+E L HS+ ++
Sbjct: 789 TDAWLSMELMFHLSVLPLTLQLTNISGNLWGKTLQGARAQRIEYYLLHTFHSKKFILPDK 848
Query: 1235 GNQQV----ASQPAMECLP---------------------------------LVMEPESG 1257
+Q++ +S+ M+ P LV+EP+ G
Sbjct: 849 ISQRMKEIKSSKRRMDYAPEDRNVDELDADLTLENDPSKGSKTKKGPAYAGGLVLEPKRG 908
Query: 1258 FYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVMTSKANTLGVSSFSPEQHVLQDLKDQI 1317
Y V++LDF SLYPS+I YN+CF T I
Sbjct: 909 LYDKYVLLLDFNSLYPSIIQEYNICFTT-------------------------------I 937
Query: 1318 LLTPNGVMFVPNKVRRGVLPRLLEEILSTRIMVKQAMKKLSSSEQVLQRI-FNARQLALK 1376
+ +GV +P+ G+LP+L+E ++S R VK MKK E L+ + RQ ALK
Sbjct: 938 PRSEDGVPRLPSSQTPGILPKLMEHLVSIRKSVKLKMKK----ETGLKYWELDIRQQALK 993
Query: 1377 LISNVTYGYTAAGFS-GRMPCAELADSIVQCGRRTLERAISFVNLHEKWNAKVIYGDTDS 1435
L +N YG GFS R LA+ I GR L+R + V H N +VIYGDTDS
Sbjct: 994 LTANSMYG--CLGFSNSRFYAKPLAELITLQGRDILQRTVDLVQNH--LNLEVIYGDTDS 1049
Query: 1436 MFVLLKGRTIKESFQIGGEIASAITSMNPNPVTLKM--EKVYHGCFLLTKKRYVGYSYES 1493
+ + I+E I ++ I +N LK+ + +Y LL KK+Y +
Sbjct: 1050 IMIHSGLDDIEEVKAIKSKV---IQEVNKKYRCLKIDCDGIYKRMLLLRKKKYAAVKLQF 1106
Query: 1494 PDQIEPVFDA--KGIETVRRDTCGAVAKTLEQSL-RLFFEH--QDLLE-VKTYLQRQWKR 1547
D +P D KG++ VRRD + + L ++ + +D++E + L + +
Sbjct: 1107 KDG-KPCEDIERKGVDMVRRDWSLLSKEIGDLCLSKILYGGSCEDVVEAIHNELMKIKEE 1165
Query: 1548 ILSGRFSLKDFIFAKEVRLGTYRARISSLPPAAIVATKA---MRVDPRAEPR-YGE---- 1599
+ +G+ +L+ ++ K + + PPAA +K+ ++V R R Y E
Sbjct: 1166 MRNGQVALEKYVITKTL----------TKPPAAYPDSKSQPHVQVALRMRQRGYKEGFNA 1215
Query: 1600 --RIPYVVIHGEPGAR------LVDMVVDPLEVLAIDSPFRMNDLYYINKQIIPALQRV 1650
+PY++ + + A + + P EV + S + ++ YY+ +QI P + R+
Sbjct: 1216 KDTVPYIICYEQGNASSASSAGIAERARHPDEVKSEGSRWLVDIDYYLAQQIHPVVSRL 1274