Miyakogusa Predicted Gene
- Lj0g3v0309879.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1MYV9_SOYBN |
195 |
84.2 |
86.0 |
(tr|I1MYV9) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT2G22120.2 |
173 |
73.7 |
78.1 |
| Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr2:9394026-9396979 FORWARD LENGTH=363 |
| Medicago |
Medtr3g087920.1 |
190 |
82.5 |
83.3 |
| zinc finger protein | HC | chr3:39850047-39844555 | 20130731 |
| Soybean |
Glyma18g02420.1 |
195 |
84.2 |
86.0 |
|
| LJGI |
gnl|LJGI|TC75191 |
426 |
99.5 |
99.5 |
homologue to UniRef100_A7PL43 Cluster: Chromosome chr7 scaffold_20, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_20, whole genome shotgun sequence - Vitis vinifera (Grape), partial (22%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0309879.1 |
length: 114 aa. |
| no_ID |
|
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPanther |
PTHR23012 |
MEMBRANE |
2.7e-20 |
35-105 |
| HMMPanther |
PTHR23012:SF30 |
PREDICTED |
2.7e-20 |
35-105 |
| Seg |
seg |
seg |
NA |
18-31 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
35 |
57 |
- Wolf-PSORT
Lj0g3v0309879.1 chlo 3, cyto 3, nucl 2.5, cyto_E.R. 2.5, vacu 2, E.R. 2, cysk_nucl 2, E.R._vacu 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0309879.1 |
|