Miyakogusa Predicted Gene

Lj0g3v0309879.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0309879.1 NODE_67104_length_933_cov_108.628082.path2.1
         (114 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g087920.1 | zinc finger protein | HC | chr3:39850047-39844...   190   3e-49
Medtr4g113520.1 | zinc finger protein | HC | chr4:46675210-46679...    77   5e-15
Medtr2g105850.2 | zinc finger protein | HC | chr2:45699264-45697...    65   1e-11
Medtr2g105850.1 | zinc finger protein | HC | chr2:45699219-45696...    65   2e-11

>Medtr3g087920.1 | zinc finger protein | HC | chr3:39850047-39844555
           | 20130731
          Length = 325

 Score =  190 bits (482), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 94/114 (82%), Positives = 95/114 (83%)

Query: 1   MWTDCTTCFESCGTMATXXXXXXXXXXXXXXPLLFIMALIVLGLFTVIGIFYSVLVATMV 60
           +WTDCT CFE CGTMAT              PLLFIMALIVLGLFTVIGIFYSVLVATMV
Sbjct: 212 LWTDCTACFEGCGTMATECGGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMV 271

Query: 61  GQRIWQRHYHILAKRMLTKEYVVEDVDGEMTDSDWSPPVLPPEHVQQLKTLGLL 114
           GQRIWQRHYHILAKRMLTKEYVVEDVDGEMT SDWSPP LP EHVQQLKTLGLL
Sbjct: 272 GQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSDWSPPALPTEHVQQLKTLGLL 325


>Medtr4g113520.1 | zinc finger protein | HC | chr4:46675210-46679677
           | 20130731
          Length = 312

 Score = 76.6 bits (187), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 45/67 (67%), Gaps = 5/67 (7%)

Query: 48  IGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTDSDWSPPVLPPEHVQQ 107
           +G+ Y  L +TM  QRIWQRHYHIL KR LTKEY+VED+ G      + PP + PEH  +
Sbjct: 251 LGVAYGFLASTMAIQRIWQRHYHILTKRELTKEYIVEDLQGS-----YFPPKIDPEHESR 305

Query: 108 LKTLGLL 114
           LK L LL
Sbjct: 306 LKMLKLL 312


>Medtr2g105850.2 | zinc finger protein | HC | chr2:45699264-45697009
           | 20130731
          Length = 197

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 8/80 (10%)

Query: 34  LFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTDS 93
            + MA++ +    ++G+ Y   +A + GQRI +RHYH+LAK+ LTKEYVVED +  + D 
Sbjct: 125 FYTMAVLAI---ILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDRE-HVKDV 180

Query: 94  DWSPPVLPPEHVQQLKTLGL 113
               P L P HV +L+ LGL
Sbjct: 181 ----PELDPSHVTELRMLGL 196


>Medtr2g105850.1 | zinc finger protein | HC | chr2:45699219-45696892
           | 20130731
          Length = 246

 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 8/80 (10%)

Query: 34  LFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTDS 93
            + MA++ + L   +G+ Y   +A + GQRI +RHYH+LAK+ LTKEYVVED +  + D 
Sbjct: 174 FYTMAVLAIIL---VGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDRE-HVKDV 229

Query: 94  DWSPPVLPPEHVQQLKTLGL 113
               P L P HV +L+ LGL
Sbjct: 230 ----PELDPSHVTELRMLGL 245