Miyakogusa Predicted Gene
- Lj0g3v0104059.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7M4I1_SOYBN |
466 |
94.5 |
97.0 |
(tr|K7M4I1) Uncharacterized protein OS=Glycine max PE=3 SV=1 |
| TAIR_pep |
AT3G20475.1 |
355 |
67.5 |
74.3 |
| Symbols: ATMSH5, MSH5 | MUTS-homologue 5 | chr3:7143546-7150811 FORWARD LENGTH=807 |
| Medicago |
Medtr5g093110.1 |
429 |
76.7 |
80.2 |
| DNA mismatch repair protein MutS | HC | chr5:40657110-40644297 | 20130731 |
| Soybean |
Glyma02g46180.1 |
400 |
81.3 |
84.6 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0104059.1 |
length: 272 aa. |
| IPR000432 |
DNA mismatch repair protein MutS, C-terminal |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005524 |
ATP binding |
|
|
| Biological Process |
GO:0006298 |
mismatch repair |
|
|
| Molecular Function |
GO:0030983 |
mismatched DNA binding |
|
|
| HMMPfam |
PF00488 |
MutS_V |
2.2e-49 |
29-236 |
| HMMSmart |
SM00534 |
ATPase |
8.8e-41 |
54-245 |
| PatternScan |
PS00486 |
DNA_MISMATCH_REPAIR_2 |
NA |
134-150 |
| IPR027417 |
P-loop containing nucleoside triphosphate hydrolase |
| superfamily |
SSF52540 |
P-loop |
1.5e-25 |
10-235 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.50.300 |
no description |
1.1e-51 |
32-236 |
| HMMPanther |
PTHR11361 |
DNA |
4.3e-136 |
1-235 |
| HMMPanther |
PTHR11361:SF17 |
MUTS |
4.3e-136 |
1-235 |
| Seg |
seg |
seg |
NA |
254-270 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
9 |
31 |
| 70 |
92 |
- Wolf-PSORT
Lj0g3v0104059.1 cyto 6, nucl 2, vacu 2, E.R. 2, E.R._vacu 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0104059.1 |
|