Miyakogusa Predicted Gene

Lj0g3v0104059.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0104059.1 Non Characterized Hit- tr|E1ZBP1|E1ZBP1_CHLVA
Putative uncharacterized protein OS=Chlorella variabil,66.67,0.094,no
description,NULL; seg,NULL; DNA_MISMATCH_REPAIR_2,DNA mismatch repair
protein MutS, C-terminal; A,CUFF.5903.1
         (272 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g093110.1 | DNA mismatch repair protein MutS | HC | chr5:4...   429   e-120
Medtr1g100683.2 | DNA mismatch repair MSH3-like protein | HC | c...   119   2e-27
Medtr1g100683.1 | DNA mismatch repair MSH3-like protein | HC | c...   119   2e-27
Medtr4g111945.1 | DNA mismatch repair MSH3-like protein | HC | c...   114   9e-26
Medtr6g086270.1 | DNA mismatch repair protein msh6 | HC | chr6:3...   108   7e-24
Medtr7g109470.1 | DNA mismatch repair MSH3-like protein | HC | c...   105   5e-23
Medtr5g068600.6 | DNA mismatch repair MUTS family protein | HC |...    64   2e-10
Medtr5g068600.5 | DNA mismatch repair MUTS family protein | HC |...    64   2e-10
Medtr5g068600.2 | DNA mismatch repair MUTS family protein | HC |...    64   2e-10
Medtr5g068600.1 | DNA mismatch repair MUTS family protein | HC |...    64   2e-10
Medtr5g068600.4 | DNA mismatch repair MUTS family protein | HC |...    64   2e-10
Medtr5g068600.3 | DNA mismatch repair MUTS family protein | HC |...    64   2e-10
Medtr5g068600.7 | DNA mismatch repair MUTS family protein | HC |...    64   2e-10
Medtr1g045670.1 | DNA mismatch repair protein | HC | chr1:171673...    58   8e-09
Medtr4g088920.1 | DNA mismatch repair protein MutS2 | HC | chr4:...    56   3e-08

>Medtr5g093110.1 | DNA mismatch repair protein MutS | HC |
           chr5:40657110-40644297 | 20130731
          Length = 810

 Score =  429 bits (1103), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 217/283 (76%), Positives = 227/283 (80%), Gaps = 40/283 (14%)

Query: 1   MERAITRDLFSRVLLFSTHLIKVATFAAELDW---------------------------- 32
           MERAITRDLFS V LFSTHL KVATFAAELD                             
Sbjct: 481 MERAITRDLFSHVSLFSTHLTKVATFAAELDCFLSMALVARQNNYVRPVLTEENLLDIKN 540

Query: 33  --HVLQEMTVDTFIPNDTKMLHDGRINIITGPNFSGKSIYIKQVALIVFLSHIGCFVPAD 90
             HVLQEMTVDTFIPNDTK+ HDGR+NIITGPNFSGKSIYIKQVA+IVFL+HIG FVPAD
Sbjct: 541 GRHVLQEMTVDTFIPNDTKIFHDGRVNIITGPNFSGKSIYIKQVAIIVFLAHIGSFVPAD 600

Query: 91  AATVGLTDRIFCATGSRLMTAEQSTFMIDLHQVGMMLRHATSRSLCLVDEFGKGTLTEDG 150
           AATVGLTDRIFCATGSRLMTAEQSTFMIDLHQ+GMMLRHATSRSLCLVDEFGKGTLTEDG
Sbjct: 601 AATVGLTDRIFCATGSRLMTAEQSTFMIDLHQIGMMLRHATSRSLCLVDEFGKGTLTEDG 660

Query: 151 TGLLAGTINHFVTYDEPPKVFVCTHLMDLLHGHSLTKSEQIMFYTMSILRPDESSTQIED 210
            GLLAG INHF+T DEPPKVFVCTHLMDLLHG SLTKSEQI FYTMSILRP++ ST IED
Sbjct: 661 IGLLAGAINHFITCDEPPKVFVCTHLMDLLHGCSLTKSEQIKFYTMSILRPEDDSTHIED 720

Query: 211 IVFLYRLVPGHAHHSYGLHCALLAGNLQDHCFKMTLPDQNIKH 253
           IVFLYRLVPGH HHSYGLHCALLAG          +PD+ IK 
Sbjct: 721 IVFLYRLVPGHVHHSYGLHCALLAG----------VPDEIIKR 753


>Medtr1g100683.2 | DNA mismatch repair MSH3-like protein | HC |
           chr1:45623820-45633367 | 20130731
          Length = 1072

 Score =  119 bits (299), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 114/219 (52%), Gaps = 9/219 (4%)

Query: 34  VLQEMTVDTFIPNDTKMLHDGRI-NIITGPNFSGKSIYIKQVALIVFLSHIGCFVPADAA 92
           VL+ +  + F+PNDT M  D     I+TGPN  GKS Y++Q +LI  ++ +G FVPA +A
Sbjct: 774 VLESILQNNFVPNDTSMHADREYCQIVTGPNMGGKSCYVRQASLIALMAQVGSFVPASSA 833

Query: 93  TVGLTDRIFCATG-SRLMTAEQSTFMIDLHQVGMMLRHATSRSLCLVDEFGKGTLTEDGT 151
            + + D I+   G S  +   +STF+ +L +   +L   T RSL ++DE G+GT T DG 
Sbjct: 834 KLHVLDGIYTRMGASDSIQQGRSTFLEELSETSHILHRCTGRSLVILDELGRGTSTHDGM 893

Query: 152 GLLAGTINHFVTYDEPPKVFVCTHLMDLLHGHSLTKSEQIMFYTMSILRP----DESSTQ 207
            +   T+ H++   +   V   TH   +    +      +  Y MS L       ++S  
Sbjct: 894 AIAYATL-HYLLKQKKSLVLFVTHYPKIASLETEFPG-SVAAYHMSHLTSHDDVSKNSND 951

Query: 208 IEDIVFLYRLVPGHAHHSYGLHCALLAGNLQDHCFKMTL 246
            EDI +LY+LVPG +  S+G   A LA  L  HC    +
Sbjct: 952 HEDITYLYKLVPGVSERSFGFKVAQLA-QLPSHCISRAI 989


>Medtr1g100683.1 | DNA mismatch repair MSH3-like protein | HC |
           chr1:45623796-45633355 | 20130731
          Length = 1072

 Score =  119 bits (299), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 114/219 (52%), Gaps = 9/219 (4%)

Query: 34  VLQEMTVDTFIPNDTKMLHDGRI-NIITGPNFSGKSIYIKQVALIVFLSHIGCFVPADAA 92
           VL+ +  + F+PNDT M  D     I+TGPN  GKS Y++Q +LI  ++ +G FVPA +A
Sbjct: 774 VLESILQNNFVPNDTSMHADREYCQIVTGPNMGGKSCYVRQASLIALMAQVGSFVPASSA 833

Query: 93  TVGLTDRIFCATG-SRLMTAEQSTFMIDLHQVGMMLRHATSRSLCLVDEFGKGTLTEDGT 151
            + + D I+   G S  +   +STF+ +L +   +L   T RSL ++DE G+GT T DG 
Sbjct: 834 KLHVLDGIYTRMGASDSIQQGRSTFLEELSETSHILHRCTGRSLVILDELGRGTSTHDGM 893

Query: 152 GLLAGTINHFVTYDEPPKVFVCTHLMDLLHGHSLTKSEQIMFYTMSILRP----DESSTQ 207
            +   T+ H++   +   V   TH   +    +      +  Y MS L       ++S  
Sbjct: 894 AIAYATL-HYLLKQKKSLVLFVTHYPKIASLETEFPG-SVAAYHMSHLTSHDDVSKNSND 951

Query: 208 IEDIVFLYRLVPGHAHHSYGLHCALLAGNLQDHCFKMTL 246
            EDI +LY+LVPG +  S+G   A LA  L  HC    +
Sbjct: 952 HEDITYLYKLVPGVSERSFGFKVAQLA-QLPSHCISRAI 989


>Medtr4g111945.1 | DNA mismatch repair MSH3-like protein | HC |
           chr4:46289309-46300169 | 20130731
          Length = 941

 Score =  114 bits (286), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 106/201 (52%), Gaps = 10/201 (4%)

Query: 42  TFIPNDTKMLH-DGRINIITGPNFSGKSIYIKQVALIVFLSHIGCFVPADAATVGLTDRI 100
            FIPND K++       IITGPN  GKS +I+QV + + ++ +GCFVP D A++ + D I
Sbjct: 647 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGCFVPCDKASISVRDCI 706

Query: 101 FCATGS-RLMTAEQSTFMIDLHQVGMMLRHATSRSLCLVDEFGKGTLTEDGTGLLAGTIN 159
           F   G+        STFM ++ +   +L+ AT +SL ++DE G+GT T DG GL      
Sbjct: 707 FARVGAGDCQLRGVSTFMQEMLETSSILKGATDKSLIIIDELGRGTSTYDGFGLAWAICE 766

Query: 160 HFVTYDEPPKVFVCTHLMDLL-----HGHSLTKSEQIMFYTMSILRPDESSTQIEDIVFL 214
           H V   + P +F  TH  +L      +G + T  + +      +    ++ST+   +  L
Sbjct: 767 HIVDVIKAPTLF-ATHFHELTALADENGSNDTHKQIVGVANYHVSAHIDASTR--KLTML 823

Query: 215 YRLVPGHAHHSYGLHCALLAG 235
           Y++ PG    S+G+H A  A 
Sbjct: 824 YKVEPGACDQSFGIHVAEFAN 844


>Medtr6g086270.1 | DNA mismatch repair protein msh6 | HC |
            chr6:32387897-32378956 | 20130731
          Length = 1155

 Score =  108 bits (269), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 103/206 (50%), Gaps = 22/206 (10%)

Query: 44   IPND-----TKMLHDGRINIITGPNFSGKSIYIKQVALIVFLSHIGCFVPADAATVGLTD 98
            +PND      +  H  R  ++TGPN  GKS  ++   L V ++ +GC+VP +   + + D
Sbjct: 879  VPNDMILGENEGGHHPRTLLLTGPNMGGKSTLLRATCLAVIMAQLGCYVPCENCVLSVVD 938

Query: 99   RIFCATGS--RLMTAEQSTFMIDLHQVGMMLRHATSRSLCLVDEFGKGTLTEDGTGLLAG 156
             IF   G+  R+M  E STF I+  +   +L +AT  SL ++DE G+GT T DG  +   
Sbjct: 939  IIFTRLGATDRIMAGE-STFFIECTETASVLHNATQDSLVILDELGRGTSTFDGYAIAYA 997

Query: 157  TINHFVTYDEPPKVFVCTHLMDLLHGHSLTKS----EQIMFYTMSIL---RPDESSTQIE 209
               H +         V   L+   H H LTK      ++    M+     + D  S Q +
Sbjct: 998  VFRHLIEK-------VNCRLLFATHYHPLTKEFASHPRVTMQHMACAFKSKSDTLSKQDQ 1050

Query: 210  DIVFLYRLVPGHAHHSYGLHCALLAG 235
            ++VFLYRL PG    SYGL  AL+AG
Sbjct: 1051 ELVFLYRLAPGACPESYGLQVALMAG 1076


>Medtr7g109470.1 | DNA mismatch repair MSH3-like protein | HC |
            chr7:44767037-44759016 | 20130731
          Length = 1280

 Score =  105 bits (262), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 73/219 (33%), Positives = 109/219 (49%), Gaps = 17/219 (7%)

Query: 26   FAAELDWHVLQEMTV--DTFIPNDTKMLHDGRINII--TGPNFSGKSIYIKQVALIVFLS 81
            +A  L   VL+  T+    F+PND  +    + + I  TGPN  GKS  ++QV L V L+
Sbjct: 993  YAKSLGHPVLRSDTLGKSAFVPNDITIGGPDQASFILLTGPNMGGKSTLLRQVCLAVILA 1052

Query: 82   HIGCFVPADAATVGLTDRIFCATGSR-LMTAEQSTFMIDLHQVGMMLRHATSRSLCLVDE 140
             +G  VP+++  +   DRIF   G+R  + A QSTF+ +L +   ML  AT  SL  +DE
Sbjct: 1053 QVGADVPSESFELSPVDRIFVRMGARDNIMAGQSTFLTELSETATMLSSATRNSLVALDE 1112

Query: 141  FGKGTLTEDGTGLLAGTINHFVTYDEPPKVFVCTHLMDLLHGHSLT----KSEQIMFYTM 196
             G+GT T DG  +    + H V      +   C  L    H H L     K  ++    M
Sbjct: 1113 LGRGTSTSDGQAIAESVLEHLV------RSVQCRGLFS-THYHRLAIDYLKDPKVCLAHM 1165

Query: 197  SILRPDESSTQIEDIVFLYRLVPGHAHHSYGLHCALLAG 235
            +  +    +  ++++ FLYRL  G    SYG++ A LAG
Sbjct: 1166 AC-QVGSGNEGLDEVTFLYRLSAGACPKSYGVNVARLAG 1203


>Medtr5g068600.6 | DNA mismatch repair MUTS family protein | HC |
           chr5:29054350-29066879 | 20130731
          Length = 799

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 8/135 (5%)

Query: 21  IKVATFAAELDWHVLQEMTVDTFIPNDTKMLHDGRINIITGPNFSGKSIYIKQVALIVFL 80
           + +AT  + LD    Q + VD  + N T      R+ +ITGPN  GK+I +K V L   +
Sbjct: 401 VNIATSVSALDKAQPQPVPVDFLVSNKT------RVIVITGPNTGGKTICLKTVGLAAMM 454

Query: 81  SHIGCFVPA-DAATVGLTDRIFCATG-SRLMTAEQSTFMIDLHQVGMMLRHATSRSLCLV 138
           +  G +V A ++  +   D +F   G  + ++   STF   L Q+  +   +T +SL L+
Sbjct: 455 AKSGLYVLASESVQIPWFDSVFADIGDEQSLSQSLSTFSGHLKQISNIKLQSTRQSLVLL 514

Query: 139 DEFGKGTLTEDGTGL 153
           DE G GT   +G  L
Sbjct: 515 DEVGAGTNPLEGAAL 529


>Medtr5g068600.5 | DNA mismatch repair MUTS family protein | HC |
           chr5:29054350-29067003 | 20130731
          Length = 799

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 8/135 (5%)

Query: 21  IKVATFAAELDWHVLQEMTVDTFIPNDTKMLHDGRINIITGPNFSGKSIYIKQVALIVFL 80
           + +AT  + LD    Q + VD  + N T      R+ +ITGPN  GK+I +K V L   +
Sbjct: 401 VNIATSVSALDKAQPQPVPVDFLVSNKT------RVIVITGPNTGGKTICLKTVGLAAMM 454

Query: 81  SHIGCFVPA-DAATVGLTDRIFCATG-SRLMTAEQSTFMIDLHQVGMMLRHATSRSLCLV 138
           +  G +V A ++  +   D +F   G  + ++   STF   L Q+  +   +T +SL L+
Sbjct: 455 AKSGLYVLASESVQIPWFDSVFADIGDEQSLSQSLSTFSGHLKQISNIKLQSTRQSLVLL 514

Query: 139 DEFGKGTLTEDGTGL 153
           DE G GT   +G  L
Sbjct: 515 DEVGAGTNPLEGAAL 529


>Medtr5g068600.2 | DNA mismatch repair MUTS family protein | HC |
           chr5:29054350-29066879 | 20130731
          Length = 799

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 8/135 (5%)

Query: 21  IKVATFAAELDWHVLQEMTVDTFIPNDTKMLHDGRINIITGPNFSGKSIYIKQVALIVFL 80
           + +AT  + LD    Q + VD  + N T      R+ +ITGPN  GK+I +K V L   +
Sbjct: 401 VNIATSVSALDKAQPQPVPVDFLVSNKT------RVIVITGPNTGGKTICLKTVGLAAMM 454

Query: 81  SHIGCFVPA-DAATVGLTDRIFCATG-SRLMTAEQSTFMIDLHQVGMMLRHATSRSLCLV 138
           +  G +V A ++  +   D +F   G  + ++   STF   L Q+  +   +T +SL L+
Sbjct: 455 AKSGLYVLASESVQIPWFDSVFADIGDEQSLSQSLSTFSGHLKQISNIKLQSTRQSLVLL 514

Query: 139 DEFGKGTLTEDGTGL 153
           DE G GT   +G  L
Sbjct: 515 DEVGAGTNPLEGAAL 529


>Medtr5g068600.1 | DNA mismatch repair MUTS family protein | HC |
           chr5:29054350-29066750 | 20130731
          Length = 799

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 8/135 (5%)

Query: 21  IKVATFAAELDWHVLQEMTVDTFIPNDTKMLHDGRINIITGPNFSGKSIYIKQVALIVFL 80
           + +AT  + LD    Q + VD  + N T      R+ +ITGPN  GK+I +K V L   +
Sbjct: 401 VNIATSVSALDKAQPQPVPVDFLVSNKT------RVIVITGPNTGGKTICLKTVGLAAMM 454

Query: 81  SHIGCFVPA-DAATVGLTDRIFCATG-SRLMTAEQSTFMIDLHQVGMMLRHATSRSLCLV 138
           +  G +V A ++  +   D +F   G  + ++   STF   L Q+  +   +T +SL L+
Sbjct: 455 AKSGLYVLASESVQIPWFDSVFADIGDEQSLSQSLSTFSGHLKQISNIKLQSTRQSLVLL 514

Query: 139 DEFGKGTLTEDGTGL 153
           DE G GT   +G  L
Sbjct: 515 DEVGAGTNPLEGAAL 529


>Medtr5g068600.4 | DNA mismatch repair MUTS family protein | HC |
           chr5:29054350-29067003 | 20130731
          Length = 799

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 8/135 (5%)

Query: 21  IKVATFAAELDWHVLQEMTVDTFIPNDTKMLHDGRINIITGPNFSGKSIYIKQVALIVFL 80
           + +AT  + LD    Q + VD  + N T      R+ +ITGPN  GK+I +K V L   +
Sbjct: 401 VNIATSVSALDKAQPQPVPVDFLVSNKT------RVIVITGPNTGGKTICLKTVGLAAMM 454

Query: 81  SHIGCFVPA-DAATVGLTDRIFCATG-SRLMTAEQSTFMIDLHQVGMMLRHATSRSLCLV 138
           +  G +V A ++  +   D +F   G  + ++   STF   L Q+  +   +T +SL L+
Sbjct: 455 AKSGLYVLASESVQIPWFDSVFADIGDEQSLSQSLSTFSGHLKQISNIKLQSTRQSLVLL 514

Query: 139 DEFGKGTLTEDGTGL 153
           DE G GT   +G  L
Sbjct: 515 DEVGAGTNPLEGAAL 529


>Medtr5g068600.3 | DNA mismatch repair MUTS family protein | HC |
           chr5:29054350-29067003 | 20130731
          Length = 799

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 8/135 (5%)

Query: 21  IKVATFAAELDWHVLQEMTVDTFIPNDTKMLHDGRINIITGPNFSGKSIYIKQVALIVFL 80
           + +AT  + LD    Q + VD  + N T      R+ +ITGPN  GK+I +K V L   +
Sbjct: 401 VNIATSVSALDKAQPQPVPVDFLVSNKT------RVIVITGPNTGGKTICLKTVGLAAMM 454

Query: 81  SHIGCFVPA-DAATVGLTDRIFCATG-SRLMTAEQSTFMIDLHQVGMMLRHATSRSLCLV 138
           +  G +V A ++  +   D +F   G  + ++   STF   L Q+  +   +T +SL L+
Sbjct: 455 AKSGLYVLASESVQIPWFDSVFADIGDEQSLSQSLSTFSGHLKQISNIKLQSTRQSLVLL 514

Query: 139 DEFGKGTLTEDGTGL 153
           DE G GT   +G  L
Sbjct: 515 DEVGAGTNPLEGAAL 529


>Medtr5g068600.7 | DNA mismatch repair MUTS family protein | HC |
           chr5:29049681-29066879 | 20130731
          Length = 699

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 8/135 (5%)

Query: 21  IKVATFAAELDWHVLQEMTVDTFIPNDTKMLHDGRINIITGPNFSGKSIYIKQVALIVFL 80
           + +AT  + LD    Q + VD  + N T      R+ +ITGPN  GK+I +K V L   +
Sbjct: 301 VNIATSVSALDKAQPQPVPVDFLVSNKT------RVIVITGPNTGGKTICLKTVGLAAMM 354

Query: 81  SHIGCFVPA-DAATVGLTDRIFCATG-SRLMTAEQSTFMIDLHQVGMMLRHATSRSLCLV 138
           +  G +V A ++  +   D +F   G  + ++   STF   L Q+  +   +T +SL L+
Sbjct: 355 AKSGLYVLASESVQIPWFDSVFADIGDEQSLSQSLSTFSGHLKQISNIKLQSTRQSLVLL 414

Query: 139 DEFGKGTLTEDGTGL 153
           DE G GT   +G  L
Sbjct: 415 DEVGAGTNPLEGAAL 429


>Medtr1g045670.1 | DNA mismatch repair protein | HC |
           chr1:17167339-17152759 | 20130731
          Length = 1138

 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 2/102 (1%)

Query: 58  IITGPNFSGKSIYIKQVALIVFLSHIGCFVPADAATVGLTDRIFCATGSRLMTAE-QSTF 116
           ++TGPN  GKS  ++ +     L   G  VPA++A +   D I     S    A+ +S+F
Sbjct: 766 LLTGPNGGGKSSLLRSICAAALLGICGLMVPAESAVIPYFDSIMLHMKSYDSPADHKSSF 825

Query: 117 MIDLHQVGMMLRHATSRSLCLVDEFGKGTLTEDGTGLLAGTI 158
            +++ ++  ++   T RSL LVDE  +GT T  GT  +AG+I
Sbjct: 826 QVEMSELRSIIAGTTKRSLVLVDEICRGTETAKGT-CIAGSI 866


>Medtr4g088920.1 | DNA mismatch repair protein MutS2 | HC |
           chr4:35517782-35512675 | 20130731
          Length = 913

 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 17/208 (8%)

Query: 41  DTFIPNDTKMLHDGRINIITGPNFSGKSIYIKQVALIVFLSHIGCFVPADAA-TVGLTDR 99
           D  +P D K+    R+ +I+GPN  GK+  +K + L   +S  G  +PA  +  +   D 
Sbjct: 411 DFPVPVDFKIRSGTRVVVISGPNTGGKTASMKTLGLASLMSKAGMHLPAKKSPKLPWFDL 470

Query: 100 IFCATGS-RLMTAEQSTFMIDLHQVGMMLRHATSRSLCLVDEFGKGTLTEDGTGLLAGTI 158
           I    G  + +    STF   + ++   L  A+ +SL L+DE G GT   +G  L A  +
Sbjct: 471 ILVDIGDHQSLEQNLSTFSGHISRIRKFLEVASKQSLVLIDEIGSGTDPSEGVALSASIL 530

Query: 159 NHFVTYDEPPKVFVCTHLMDLLHGHSLTKSEQIMFYTMSILRPDESSTQIEDIVFLYRLV 218
            +   +       V TH  DL    S  K +   F   ++         +E +   YR++
Sbjct: 531 QYLREHVN--LAVVTTHYADL----STMKEKDTCFENAAM------EFSLETLQPTYRVL 578

Query: 219 PGHAHHSYGLHCALLAG---NLQDHCFK 243
            G    S  L  A   G   N+ DH  K
Sbjct: 579 WGCTGDSNALSIAQSIGFDKNIIDHAQK 606