Miyakogusa Predicted Gene
- Lj0g3v0096159.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1MWA8_SOYBN |
427 |
79.0 |
87.4 |
(tr|I1MWA8) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT5G11640.1 |
277 |
54.6 |
71.5 |
| Symbols: | Thioredoxin superfamily protein | chr5:3742008-3743703 FORWARD LENGTH=253 |
| Medicago |
Medtr1g007120.1 |
354 |
75.6 |
83.2 |
| thioredoxin-related transmembrane protein, putative | HC | chr1:184125-190492 | 20130731 |
| Soybean |
Glyma17g26900.3 |
427 |
79.0 |
87.4 |
|
| LJGI |
gnl|LJGI|TC60266 |
1558 |
100.0 |
100.0 |
similar to UniRef100_A7P562 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (61%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0096159.1 |
length: 261 aa. |
| IPR012336 |
Thioredoxin-like fold |
| method |
AccNumber |
shortName |
E-value |
location |
| Gene3D |
G3DSA:3.40.30.10 |
no description |
5e-06 |
132-226 |
| superfamily |
SSF52833 |
Thioredoxin-like |
1.9e-08 |
117-225 |
| no_ID |
|
| HMMPanther |
PTHR15853 |
THIOREDOXIN-RELATED |
6.1e-78 |
1-257 |
| HMMPanther |
PTHR15853:SF0 |
SUBFAMILY |
6.1e-78 |
1-257 |
| Seg |
seg |
seg |
NA |
43-54 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
15 |
37 |
| 52 |
74 |
| 79 |
101 |
| 104 |
126 |
- Wolf-PSORT
Lj0g3v0096159.1 golg 4.5, golg_plas 4.5, plas 3.5, chlo 2, vacu 2, E.R. 2, E.R._vacu 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0096159.1 |
|