Miyakogusa Predicted Gene
- Lj0g3v0071459.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1MQ79_SOYBN |
432 |
75.9 |
85.3 |
(tr|I1MQ79) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT1G04945.2 |
350 |
66.1 |
81.9 |
| Symbols: | HIT-type Zinc finger family protein | chr1:1400969-1402651 FORWARD LENGTH=392 |
| Medicago |
Medtr6g463300.1 |
428 |
73.8 |
83.0 |
| HIT zinc finger protein | HC | chr6:21892067-21886554 | 20130731 |
| Soybean |
Glyma16g32840.1 |
432 |
75.9 |
85.3 |
|
| LJGI |
gnl|LJGI|FS328747 |
811 |
99.5 |
99.5 |
similar to UniRef100_A7R6P0 Cluster: Chromosome undetermined scaffold_1365, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_1365, whole genome shotgun sequence - Vitis vinifera (Grape), partial (31%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0071459.1 |
length: 277 aa. |
| IPR007529 |
Zinc finger, HIT-type |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF04438 |
zf-HIT |
6.3e-07 |
20-48 |
| ProfileScan |
PS51083 |
ZF_HIT |
10.455 |
22-56 |
| no_ID |
|
| HMMPanther |
PTHR13483 |
UNCHARACTERIZED |
1.2e-81 |
5-277 |
| HMMPanther |
PTHR13483:SF3 |
SUBFAMILY |
1.2e-81 |
5-277 |
| superfamily |
SSF144232 |
HIT/MYND |
4e-11 |
13-58 |
- Wolf-PSORT
Lj0g3v0071459.1 golg 4, nucl 3, golg_plas 3, cyto 2, mito 2, plas 2, mito_plas 2, cyto_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0071459.1 |
|