hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20080905/iprscan-20080905-10282612/chunk_1/iprscan-20080905-10282612.nocrc
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Query sequence: pF1KB9490
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00646.23.fs F-box domain                                    24.8    1.4e-05   1
PF00646.23.ls F-box domain                                    26.9    6.9e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00646.23.fs   1/1      28    75 ..     1    46 []    24.8  1.4e-05
PF00646.23.ls   1/1      28    75 ..     1    46 []    26.9  6.9e-05

Alignments of top-scoring domains:
PF00646.23.fs: domain 1 of 1, from 28 to 75: score 24.8, E = 1.4e-05
                   *->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwk.kl
                      + + +L +e+l++I+++L++ d++ + ++S++++++v+   + ++ +
   pF1KB9490    28    DYMNQLSHEVLCHIFRYLPLQDIMCMECLSRKLKEAVTLYlRVVrVV 74   

                   l<-*
                       
   pF1KB9490    75 D    75   

PF00646.23.ls: domain 1 of 1, from 28 to 75: score 26.9, E = 6.9e-05
                   *->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwk.kl
                      + + +L +e+l++I+++L++ d++ + ++S++++++v+   + ++ +
   pF1KB9490    28    DYMNQLSHEVLCHIFRYLPLQDIMCMECLSRKLKEAVTLYlRVVrVV 74   

                   l<-*
                       
   pF1KB9490    75 D    75   

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