hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20080306/iprscan-20080306-04413740/chunk_1/iprscan-20080306-04413740.nocrc
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Query sequence: pF1KSDA0979
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02985.12.ls HEAT repeat                                     30.5    5.5e-06   5
PF02178.9.ls AT hook motif                                   17.6       0.02   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02985.12.ls   4/5     383   419 ..     1    36 []    18.0    0.032
PF02178.9.ls   3/3    1372  1384 ..     1    13 []    13.3     0.11

Alignments of top-scoring domains:
PF02985.12.ls: domain 4 of 5, from 383 to 419: score 18.0, E = 0.032
                   *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-*
                        + d+ll+++ +   D+ ++VR+ A   L+++++++   
  pF1KSDA097   383    LlVNDHLLNFVRERTLDKRWRVRKEAMMGLAQIYKKY    419  

PF02178.9.ls: domain 3 of 3, from 1372 to 1384: score 13.3, E = 0.11
                   *->kRkRGRPrKaata<-*
                       ++RGRP K++++   
  pF1KSDA097  1372    QKGRGRPSKTPSP    1384 

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