hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20080307/iprscan-20080307-03592272/chunk_1/iprscan-20080307-03592272.nocrc
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Query sequence: pF1KSDA2038
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00536.20.ls SAM domain (Sterile alpha motif)                12.0      0.012   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00536.20.ls   1/1     807   871 ..     1    65 []    12.0    0.012

Alignments of top-scoring domains:
PF00536.20.ls: domain 1 of 1, from 807 to 871: score 12.0, E = 0.012
                   *->dgwsfesVgeWLesigl.gqYidnFlsagyidgdtllqlteeDLed.
                      +  s e+V+  L+ igl++  ++ F ++++idg+ + ql+e+ L d+
  pF1KSDA203   807    SALSLEEVSRSLRFIGLsEDVVSFF-ARERIDGSIFVQLSEDILADd 852  

                   lGvtllGHrkKIlssIqgLk<-*
                      t+    kKI++ I+g++   
  pF1KSDA203   853 FHLTK-LQVKKIMQFIKGWR    871  

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